jgi.p|Nanoce1779_2|674712, mRNA_10479 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|674712
Unique Name	mRNA_10479
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1092
Alignment location	scaffold_52:28417..30049 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	674798
Track	FilteredModels2
ProteinId	674712

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_52	supercontig	scaffold_52:28417..30049 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|674712	gene_10479	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|674712	mRNA_10479-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10479	CDS_10479	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_52:28417..30049+
coding sequence from alignment at scaffold_52:28417..30049+

mRNA sequence

>mRNA_10479 ID=mRNA_10479|Name=jgi.p|Nanoce1779_2|674712|organism=Nannochloropsis oceanica|type=mRNA|length=1092bp
ATGGACTTTGGTCCCACGACAGATCAAGGGCAGAATCAGAATCAACGCGG
CTGTCTGAATAAAATGAAACAGCAGCACAACAGTTTGTTGTCAATTCTTT
TAGACGATAAAGAGGCACACGGTGGCGCTGTGGCCCTGTGCTGCCTGACA
ACACGCTTCGCCGGTGCTGACAAACTTCCCGACTCCCCGCCGACAAACTC
CTCGTCTTGGGCCTCTTCTCTCTTAGCGGCGAGTCGCGCCTTAGATCTTC
AAAAGCAGGCGGTCCACAAATCATTGGAATCCTTTCTGACCCAGTACCAG
CAACAGCTCCTCCCGTTCCCCATCCACCAGCACCCTATCCTCAAGTATAA
GATAAGAAATTTACTCTCCGAGGCCTCGCCTTCCTTTCAAGCACAGCAGC
AGCAGAACCAGCACCAGCAGCATCTCAAAAGAAGCCATCCACCACTGCAG
CTTCACTATCCTCCGAAATGCCAAATACAACCGCCACTTAAGAAGCAGCA
TGTGATGACGTCAACCAAGTGCTTTTTAGTAAACGAGCTCGTGGAGGCTA
AGCGCTACCCACCGATTGCACCGCTGAGTGAGGCCTCTTTGTCTCTGCAA
GAGATTCGAACTGGTGTCATGGGTGTTTCGGTGGGATTGCTGCCTGGCAG
ATGCTCCGAGATCATGAGAAAGTACATTCCGAGCGCTGAAAAGCAGCGAA
GAGCGTCGAAAGAGGACTTGTCGGGTCTAACTGCGGAGGAGAAGGTAGAG
CGACGCAAGATACGTGCTCGCATGTACAATCGCTTGTCTCGCCACCGCCG
CAATCAGTTGCATGGTGAGCTGCGCAGCGATGTGAGTCGCATGCTGATCT
ACAAGAATATTATTGAAGATGCACCGGACATGATATGTGTCATCTCCCCC
GACATTCAGAGCCAGGTGCTGTACATCAATAAGGCCGCTCGAGGCGTCCT
TGTCACTGGGCCCGCGCAGCTGGTGGGGTCAAGCTTCTGGGACATCGTCC
ACACAGAAGATAAGATGGCGCTGTTCAGGGCTCTCACTACCGTCACTTTC
TTCAAGTCGGCCGGAAAAATAATGGTGGGGAAAACGGGCTAA

protein sequence of jgi.p|Nanoce1779_2|674712

>mRNA_10479-protein ID=mRNA_10479-protein|Name=jgi.p|Nanoce1779_2|674712|organism=Nannochloropsis oceanica|type=polypeptide|length=364bp
MDFGPTTDQGQNQNQRGCLNKMKQQHNSLLSILLDDKEAHGGAVALCCLT
TRFAGADKLPDSPPTNSSSWASSLLAASRALDLQKQAVHKSLESFLTQYQ
QQLLPFPIHQHPILKYKIRNLLSEASPSFQAQQQQNQHQQHLKRSHPPLQ
LHYPPKCQIQPPLKKQHVMTSTKCFLVNELVEAKRYPPIAPLSEASLSLQ
EIRTGVMGVSVGLLPGRCSEIMRKYIPSAEKQRRASKEDLSGLTAEEKVE
RRKIRARMYNRLSRHRRNQLHGELRSDVSRMLIYKNIIEDAPDMICVISP
DIQSQVLYINKAARGVLVTGPAQLVGSSFWDIVHTEDKMALFRALTTVTF
FKSAGKIMVGKTG*

mRNA from alignment at scaffold_52:28417..30049+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10479 ID=mRNA_10479|Name=jgi.p|Nanoce1779_2|674712|organism=Nannochloropsis oceanica|type=mRNA|length=1633bp|location=Sequence derived from alignment at scaffold_52:28417..30049+ (Nannochloropsis oceanica)
ATGGACTTTGGTCCCACGACAGATCAAGGGCAGAATCAGAATCAACGCGG
CTGTCTGAATAAAATGAAACAGCAGCACAACAGTTTGTTGTCAATTCTTT
TAGACGATAAAGAGGCACACGGTGGCGCTGTGGCCCTGTGCTGCCTGACA
ACACGCTTCGCCGGTGCTGACAAACTTCCCGACTCCCCGCCGACAAACTC
CTCGTCTTGGGCCTCTTCTCTCTTAGCGGCGAGTCGCGGTACGTTGCTTG
AAGTGAATCGGTGCCCAGGACTCCGTACCTACACTTCTATGCCTCTATGT
ACACATTTCCCCGATTTGCTTCAACTATTATCCCACGCCTCATACGCTCC
CATGTAATATAGGCATACATGCACACAAAGCGCACAGAATCGTCTACATG
CGCACCACTTACGTGTAGCAAATCTATTCACAAACACGTGCACTCACTCA
CATTTATACCTTTTTCCCCCTACATGCAGCCTTAGATCTTCAAAAGCAGG
CGGTCCACAAATCATTGGAATCCTTTCTGACCCAGTACCAGCAACAGCTC
CTCCCGTTCCCCATCCACCAGCACCCTATCCTCAAGTATAAGATAAGAAA
TTTACTCTCCGAGGCCTCGCCTTCCTTTCAAGCACAGCAGCAGCAGAACC
AGCACCAGCAGCATCTCAAAAGAAGCCATCCACCACTGCAGCTTCACTAT
CCTCCGAAATGCCAAATACAACCGCCACTTAAGAAGCAGCATGTGATGAC
GTCAACCAAGTGCTTTTTAGTAAACGAGCTCGTGGAGGCTAAGCGCTACC
CACCGATTGCACCGCTGAGTGAGGCCTCTTTGTCTCTGCAAGAGATTCGA
ACTGGTGTCATGGGTGTTTCGGTGGGATTGCTGCCTGGCAGATGCTCCGA
GATCATGAGAAAGTACATTCCGGTAAGAGACATGAGAGAGATACGCTTTG
CGTTTGCATGTCTGATAAAACCTCATGTGGCAACTCATTCTTTCTTTTCG
TTCTCGTTCTTCCCGTTTAATAGAGCGCTGAAAAGCAGCGAAGAGCGTCG
AAAGAGGACTTGTCGGGTCTAACTGCGGAGGAGAAGGTAGAGCGACGCAA
GATACGTGCTCGCATGTACAATCGCTTGTCTCGCCACCGCCGCAATCAGT
TGCATGGTGAGCTGCGCAGCGATGTGAGTCGCATGCTGATCTACAAGAAT
ATTATTGAAGATGCACCGGACATGATATGTGTCATCTCCCCCGACATTCA
GAGCCAGGTGCTGTACATCAATAAGGCCGCTCGAGGCGTCCTTGTCACTG
GGCCCGCGCAGCTGGTGGGGTCAAGCTTCTGGGACATCGTCCACACAGAA
GATAAGATGGCGCTGTTCAGGGCTCTCACTACCGTCACTTTCTTCAAGTC
GGCCGGAAAAGTAGAAAGGCTATGCTGTCTTGTCGTCACGAACAACCCCG
GTGTATATATGTCTGTCCGGATGACGCTAGCAAATGGGATGCAGGGTATT
GTCTGCGTAATGTGCAATGAAGATCATCTGTCTACCATTTCGCGCGTGTT
GCCTGATAGAAGGCCCTCTGTTATGTAGGGCGGTCTCTTTTTGGTGGCAC
GATGATCAGATAATGGTGGGGAAAACGGGCTAA

Coding sequence (CDS) from alignment at scaffold_52:28417..30049+

>mRNA_10479 ID=mRNA_10479|Name=jgi.p|Nanoce1779_2|674712|organism=Nannochloropsis oceanica|type=CDS|length=4368bp|location=Sequence derived from alignment at scaffold_52:28417..30049+ (Nannochloropsis oceanica)
ATGGACTTTGGTCCCACGACAGATCAAGGGCAGAATCAGAATCAACGCGG
CTGTCTGAATAAAATGAAACAGCAGCACAACAGTTTGTTGTCAATTCTTT
TAGACGATAAAGAGGCACACGGTGGCGCTGTGGCCCTGTGCTGCCTGACA
ACACGCTTCGCCGGTGCTGACAAACTTCCCGACTCCCCGCCGACAAACTC
CTCGTCTTGGGCCTCTTCTCTCTTAGCGGCGAGTCGCGCCTTAGATCTTC
AAAAGCAGGCGGTCCACAAATCATTGGAATCCTTTCTGACCCAGTACCAG
CAACAGCTCCTCCCGTTCCCCATCCACCAGCACCCTATCCTCAAGTATAA
GATAAGAAATTTACTCTCCGAGGCCTCGCCTTCCTTTCAAGCACAGCAGC
AGCAGAACCAGCACCAGCAGCATCTCAAAAGAAGCCATCCACCACTGCAG
CTTCACTATCCTCCGAAATGCCAAATACAACCGCCACTTAAGAAGCAGCA
TGTGATGACGTCAACCAAGTGCTTTTTAGTAAACGAGCTCGTGGAGGCTA
AGCGCTACCCACCGATTGCACCGCTGAGTGAGGCCTCTTTGTCTCTGCAA
GAGATTCGAACTGGTGTCATGGGTGTTTCGGTGGGATTGCTGCCTGGCAG
ATGCTCCGAGATCATGAGAAAGTACATTCCGAGCGCTGAAAAGCAGCGAA
GAGCGTCGAAAGAGGACTTGTCGGGTCTAACTGCGGAGGAGAAGGTAGAG
CGACGCAAGATACGTGCTCGCATGTACAATCGCTTGTCTCGCCACCGCCG
CAATCAGTTGCATGGTGAGCTGCGCAGCGATGTGAGTCGCATGCTGATCT
ACAAGAATATTATTGAAGATGCACCGGACATGATATGTGTCATCTCCCCC
GACATTCAGAGCCAGGTGCTGTACATCAATAAGGCCGCTCGAGGCGTCCT
TGTCACTGGGCCCGCGCAGCTGGTGGGGTCAAGCTTCTGGGACATCGTCC
ACACAGAAGATAAGATGGCGCTGTTCAGGGCTCTCACTACCGTCACTTTC
TTCAAGTCGGCCGGAAAAATAATGGTGGGGAAAACGGGCTAAATGGACTT
TGGTCCCACGACAGATCAAGGGCAGAATCAGAATCAACGCGGCTGTCTGA
ATAAAATGAAACAGCAGCACAACAGTTTGTTGTCAATTCTTTTAGACGAT
AAAGAGGCACACGGTGGCGCTGTGGCCCTGTGCTGCCTGACAACACGCTT
CGCCGGTGCTGACAAACTTCCCGACTCCCCGCCGACAAACTCCTCGTCTT
GGGCCTCTTCTCTCTTAGCGGCGAGTCGCGCCTTAGATCTTCAAAAGCAG
GCGGTCCACAAATCATTGGAATCCTTTCTGACCCAGTACCAGCAACAGCT
CCTCCCGTTCCCCATCCACCAGCACCCTATCCTCAAGTATAAGATAAGAA
ATTTACTCTCCGAGGCCTCGCCTTCCTTTCAAGCACAGCAGCAGCAGAAC
CAGCACCAGCAGCATCTCAAAAGAAGCCATCCACCACTGCAGCTTCACTA
TCCTCCGAAATGCCAAATACAACCGCCACTTAAGAAGCAGCATGTGATGA
CGTCAACCAAGTGCTTTTTAGTAAACGAGCTCGTGGAGGCTAAGCGCTAC
CCACCGATTGCACCGCTGAGTGAGGCCTCTTTGTCTCTGCAAGAGATTCG
AACTGGTGTCATGGGTGTTTCGGTGGGATTGCTGCCTGGCAGATGCTCCG
AGATCATGAGAAAGTACATTCCGAGCGCTGAAAAGCAGCGAAGAGCGTCG
AAAGAGGACTTGTCGGGTCTAACTGCGGAGGAGAAGGTAGAGCGACGCAA
GATACGTGCTCGCATGTACAATCGCTTGTCTCGCCACCGCCGCAATCAGT
TGCATGGTGAGCTGCGCAGCGATGTGAGTCGCATGCTGATCTACAAGAAT
ATTATTGAAGATGCACCGGACATGATATGTGTCATCTCCCCCGACATTCA
GAGCCAGGTGCTGTACATCAATAAGGCCGCTCGAGGCGTCCTTGTCACTG
GGCCCGCGCAGCTGGTGGGGTCAAGCTTCTGGGACATCGTCCACACAGAA
GATAAGATGGCGCTGTTCAGGGCTCTCACTACCGTCACTTTCTTCAAGTC
GGCCGGAAAAATAATGGTGGGGAAAACGGGCTAAATGGACTTTGGTCCCA
CGACAGATCAAGGGCAGAATCAGAATCAACGCGGCTGTCTGAATAAAATG
AAACAGCAGCACAACAGTTTGTTGTCAATTCTTTTAGACGATAAAGAGGC
ACACGGTGGCGCTGTGGCCCTGTGCTGCCTGACAACACGCTTCGCCGGTG
CTGACAAACTTCCCGACTCCCCGCCGACAAACTCCTCGTCTTGGGCCTCT
TCTCTCTTAGCGGCGAGTCGCGCCTTAGATCTTCAAAAGCAGGCGGTCCA
CAAATCATTGGAATCCTTTCTGACCCAGTACCAGCAACAGCTCCTCCCGT
TCCCCATCCACCAGCACCCTATCCTCAAGTATAAGATAAGAAATTTACTC
TCCGAGGCCTCGCCTTCCTTTCAAGCACAGCAGCAGCAGAACCAGCACCA
GCAGCATCTCAAAAGAAGCCATCCACCACTGCAGCTTCACTATCCTCCGA
AATGCCAAATACAACCGCCACTTAAGAAGCAGCATGTGATGACGTCAACC
AAGTGCTTTTTAGTAAACGAGCTCGTGGAGGCTAAGCGCTACCCACCGAT
TGCACCGCTGAGTGAGGCCTCTTTGTCTCTGCAAGAGATTCGAACTGGTG
TCATGGGTGTTTCGGTGGGATTGCTGCCTGGCAGATGCTCCGAGATCATG
AGAAAGTACATTCCGAGCGCTGAAAAGCAGCGAAGAGCGTCGAAAGAGGA
CTTGTCGGGTCTAACTGCGGAGGAGAAGGTAGAGCGACGCAAGATACGTG
CTCGCATGTACAATCGCTTGTCTCGCCACCGCCGCAATCAGTTGCATGGT
GAGCTGCGCAGCGATGTGAGTCGCATGCTGATCTACAAGAATATTATTGA
AGATGCACCGGACATGATATGTGTCATCTCCCCCGACATTCAGAGCCAGG
TGCTGTACATCAATAAGGCCGCTCGAGGCGTCCTTGTCACTGGGCCCGCG
CAGCTGGTGGGGTCAAGCTTCTGGGACATCGTCCACACAGAAGATAAGAT
GGCGCTGTTCAGGGCTCTCACTACCGTCACTTTCTTCAAGTCGGCCGGAA
AAATAATGGTGGGGAAAACGGGCTAAATGGACTTTGGTCCCACGACAGAT
CAAGGGCAGAATCAGAATCAACGCGGCTGTCTGAATAAAATGAAACAGCA
GCACAACAGTTTGTTGTCAATTCTTTTAGACGATAAAGAGGCACACGGTG
GCGCTGTGGCCCTGTGCTGCCTGACAACACGCTTCGCCGGTGCTGACAAA
CTTCCCGACTCCCCGCCGACAAACTCCTCGTCTTGGGCCTCTTCTCTCTT
AGCGGCGAGTCGCGCCTTAGATCTTCAAAAGCAGGCGGTCCACAAATCAT
TGGAATCCTTTCTGACCCAGTACCAGCAACAGCTCCTCCCGTTCCCCATC
CACCAGCACCCTATCCTCAAGTATAAGATAAGAAATTTACTCTCCGAGGC
CTCGCCTTCCTTTCAAGCACAGCAGCAGCAGAACCAGCACCAGCAGCATC
TCAAAAGAAGCCATCCACCACTGCAGCTTCACTATCCTCCGAAATGCCAA
ATACAACCGCCACTTAAGAAGCAGCATGTGATGACGTCAACCAAGTGCTT
TTTAGTAAACGAGCTCGTGGAGGCTAAGCGCTACCCACCGATTGCACCGC
TGAGTGAGGCCTCTTTGTCTCTGCAAGAGATTCGAACTGGTGTCATGGGT
GTTTCGGTGGGATTGCTGCCTGGCAGATGCTCCGAGATCATGAGAAAGTA
CATTCCGAGCGCTGAAAAGCAGCGAAGAGCGTCGAAAGAGGACTTGTCGG
GTCTAACTGCGGAGGAGAAGGTAGAGCGACGCAAGATACGTGCTCGCATG
TACAATCGCTTGTCTCGCCACCGCCGCAATCAGTTGCATGGTGAGCTGCG
CAGCGATGTGAGTCGCATGCTGATCTACAAGAATATTATTGAAGATGCAC
CGGACATGATATGTGTCATCTCCCCCGACATTCAGAGCCAGGTGCTGTAC
ATCAATAAGGCCGCTCGAGGCGTCCTTGTCACTGGGCCCGCGCAGCTGGT
GGGGTCAAGCTTCTGGGACATCGTCCACACAGAAGATAAGATGGCGCTGT
TCAGGGCTCTCACTACCGTCACTTTCTTCAAGTCGGCCGGAAAAATAATG
GTGGGGAAAACGGGCTAA

Synonyms

Publications