jgi.p|Nanoce1779_2|611643, mRNA_10697 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|611643
Unique NamemRNA_10697
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length648
Alignment locationscaffold_58:4605..5252 -

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Properties
Property NameValue
TranscriptId611729
TrackFilteredModels2
ProteinId611643
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:4605..5252 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611643gene_10697Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611643mRNA_10697-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10697CDS_10697Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10697 ID=mRNA_10697|Name=jgi.p|Nanoce1779_2|611643|organism=Nannochloropsis oceanica|type=mRNA|length=648bp
ACAGACCTCCCCTCCCCACGGCGTATTTATCCGAAGAAAAGAGTGGGATA
ACAAGGATTCATCACCACCAATAATTGGGAGAGGATACGCTGCATTCTGG
CTTATTACGGGATGGCAGTGAATGATGATGGTCATCGCGAGGGAGGAAGG
GAACAACGACGAGCACTGTAGAAAAAGCCACGCCGTGCGAAACTGATGAG
AACGGAAGCGAAGAAGACCACAATCCCACATATTTACGTCGCGCGATGTT
TCTCGATCCCCCCTCCGCCATTTCCTTCGTTTCCCGCCTTTTCTTCTTCT
TCTTCTTTGGGGTATTCCTCTTTTTTTCCCCTTCTAATGCTCATGCTTGT
TCTCGTCCTTCTCTTTTTTGGGGTCTTCCACTTAGTCCCTTTCTCACCAC
TTATCACCCCTTCGCCCCCCCTGTCATATCTCATTCCTTCATTTACTCCA
TTCTCTCCTCTCTTCTCTCTTTCTGACCTGCATCCCTCTTCCTTCCTCTT
CCCTTTGTTCCTATACACACGCCAAACCCATCCAGCCACGTTATTCCTTC
TTCCATCCCTCCCTCGTTCCCTCCCTCCTTCCCTCAACGGCACAATGCAA
GGTCACCCCACCTCACTTAAAATCACATTCCCTCCCCCCCCCCCCTCC
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protein sequence of jgi.p|Nanoce1779_2|611643

>mRNA_10697-protein ID=mRNA_10697-protein|Name=jgi.p|Nanoce1779_2|611643|organism=Nannochloropsis oceanica|type=polypeptide|length=77bp
MFLDPPSAISFVSRLFFFFFFGVFLFFSPSNAHACSRPSLFWGLPLSPFL
TTYHPFAPPVISHSFIYSILSSLLSF*
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mRNA from alignment at scaffold_58:4605..5252-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10697 ID=mRNA_10697|Name=jgi.p|Nanoce1779_2|611643|organism=Nannochloropsis oceanica|type=mRNA|length=648bp|location=Sequence derived from alignment at scaffold_58:4605..5252- (Nannochloropsis oceanica)
ACAGACCTCCCCTCCCCACGGCGTATTTATCCGAAGAAAAGAGTGGGATA
ACAAGGATTCATCACCACCAATAATTGGGAGAGGATACGCTGCATTCTGG
CTTATTACGGGATGGCAGTGAATGATGATGGTCATCGCGAGGGAGGAAGG
GAACAACGACGAGCACTGTAGAAAAAGCCACGCCGTGCGAAACTGATGAG
AACGGAAGCGAAGAAGACCACAATCCCACATATTTACGTCGCGCGATGTT
TCTCGATCCCCCCTCCGCCATTTCCTTCGTTTCCCGCCTTTTCTTCTTCT
TCTTCTTTGGGGTATTCCTCTTTTTTTCCCCTTCTAATGCTCATGCTTGT
TCTCGTCCTTCTCTTTTTTGGGGTCTTCCACTTAGTCCCTTTCTCACCAC
TTATCACCCCTTCGCCCCCCCTGTCATATCTCATTCCTTCATTTACTCCA
TTCTCTCCTCTCTTCTCTCTTTCTGACCTGCATCCCTCTTCCTTCCTCTT
CCCTTTGTTCCTATACACACGCCAAACCCATCCAGCCACGTTATTCCTTC
TTCCATCCCTCCCTCGTTCCCTCCCTCCTTCCCTCAACGGCACAATGCAA
GGTCACCCCACCTCACTTAAAATCACATTCCCTCCCCCCCCCCCCTCC
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Coding sequence (CDS) from alignment at scaffold_58:4605..5252-

>mRNA_10697 ID=mRNA_10697|Name=jgi.p|Nanoce1779_2|611643|organism=Nannochloropsis oceanica|type=CDS|length=231bp|location=Sequence derived from alignment at scaffold_58:4605..5252- (Nannochloropsis oceanica)
ATGTTTCTCGATCCCCCCTCCGCCATTTCCTTCGTTTCCCGCCTTTTCTT
CTTCTTCTTCTTTGGGGTATTCCTCTTTTTTTCCCCTTCTAATGCTCATG
CTTGTTCTCGTCCTTCTCTTTTTTGGGGTCTTCCACTTAGTCCCTTTCTC
ACCACTTATCACCCCTTCGCCCCCCCTGTCATATCTCATTCCTTCATTTA
CTCCATTCTCTCCTCTCTTCTCTCTTTCTGA
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Synonyms
Publications