jgi.p|Nanoce1779_2|581914, mRNA_3371 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|581914
Unique NamemRNA_3371
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1753
Alignment locationscaffold_6:156723..158475 -

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Properties
Property NameValue
TranscriptId582000
TrackFilteredModels2
ProteinId581914
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:156723..158475 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581914gene_3371Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581914mRNA_3371-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3371CDS_3371Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3371 ID=mRNA_3371|Name=jgi.p|Nanoce1779_2|581914|organism=Nannochloropsis oceanica|type=mRNA|length=1753bp
CTCTCCTGGTGATGAGGAGTTTTGTCGCGTAAGACTGATTTTTGGGTGTG
GTAGTGTTGGAAGAAGCGTCAAGCATGGAAGAAATCTACTGAGACCACAT
CAGTGAGTTTGCCGAAGAATACATCAGGTAGCGAGCTGTTTTGTGTGCCC
TGTGACTTCGTTTGCTTCTCCTTCTCTGTGCTTTGGCAGGAAGCCCCCAC
ATGTAGACTGTCGATTCGACGGATACCTTGGCTATTCGCGAGCGATCACT
TTTTTCATATATCTAGCCTTTGTTTCTCCTCGGAGCAAAGTGTTCACGAA
TCACAGGCATACCAGCAACTAGCCCTGCGGCGATGCGCCGGCACCTTACA
CTTAACACGTTTAGCTCGATGATGGCAAGCAAAACAAGGCCGTACATGGA
ATGACGAAAAAGCATCTTCAACTCCTCCCCCCTGCACATACACTCACACA
CCCACACACATCACAGCCTACAAAAACGATGCCGGGCAGAAGAGTAGCCG
CTGCGGCGACCTTCCTGGTACTGTCCTCCGCGTCCTTGGTCGCAGCTTTC
CAGTTCCAGCCATCTCCCTTCTCCGTCTCCACGACGGCCCCCTCCAAACG
CGACGCTGTCGTGATGAATTCCTACCAAGAGCAACTTGCCCGGGCCAAGG
CCGAAAAGGCTGCCCGCCAAGCCGGTCAGGGCATGGCGCCTCGGCAGCAG
CAGTACATGGCGCACCCTGAAGCAAGCCATCCCCCTTCTCCTTCTCCCCC
CCCTCCTGCCCAGTACCAGCAGCAAGCACGACCGGCCGCCGCCTTGCCCG
TTGAGACCAACGAGGCCGTCGCAACCTTACTCTCTTTGCTTGGTGAGCGT
CTGGGCTCCGGCCAGCCTCTGGCCCCGGAAAAAGTGCGGGTCTTCACTCA
AGCGGCGGAAGCAGTCATTCGAGAGGCACGTGGTGGTGGCGTGAGCGCAG
CGCCCGTCCAACAGTATCAACCGCAGCAGCCCCCGCAGCCGGCGCAGCAG
TATGCATCGCCGCCTCCACAGCAGTACCAGCAGGCGCAGTATGAGCAGCA
GGCGCCGCAGTCCTCAGGAGGATTTGAAGCCACGGGTTTTGATTACCAAG
GCGAGGAGGACGCTTGGGAATTAGGGACACGGACGTTGTCCGGCCCCGCG
CCGGGATTTAAGGCCGCGTCAGCGTACCAGCCGACTGGCACTGGAGGTTT
CGATGAGGATTTTGACGATTTCGAGAAGTACGGCTTGCCACAACCAGTGA
CGCGGCAGAAGAAGAGTCCGTTCATGGAGACGCTCAAAGGTACTCCATTT
TATGTGGATATTGCGGCGCAGCCCGTCAGCTCGGACGAGTACTTGAAGAT
CATCCAGAACCGAGTGAAGGAGGCGCAGATGAAGCGAAGGCGAGAGGAGA
AGCACGTGGGGATGGAATCAGCAAATTTTTACATGGAAGAGCTGAACAGG
CAGAAGCGAGAGCGGTTGCGTGCGCAGGCGGAGGAGCAGTCCCAGCAATG
GCAACAGGGGGGGCAGCAGGGGCAGCAGGGGCAGCGGTAGAGAGTGTAGT
AGGGTTGGTGGGATATGGTAGGTCGGTGGGGTGAATTAAGTGAATCAAAA
GGGGACCAAACTCGACGGATGGAATGTTGGGAGGAACATCGTTGGTATCT
TGGGATGGAAAGAGGGGAAGGGGGAAGGAGGAGGGGAGGGAAGGAAAAAG
AAGAAAGAATCTTCCTCCACCATTTTTTCCAGTATGTCATGTGGGGGGTT
TGG
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protein sequence of jgi.p|Nanoce1779_2|581914

>mRNA_3371-protein ID=mRNA_3371-protein|Name=jgi.p|Nanoce1779_2|581914|organism=Nannochloropsis oceanica|type=polypeptide|length=380bp
MTKKHLQLLPPAHTLTHPHTSQPTKTMPGRRVAAAATFLVLSSASLVAAF
QFQPSPFSVSTTAPSKRDAVVMNSYQEQLARAKAEKAARQAGQGMAPRQQ
QYMAHPEASHPPSPSPPPPAQYQQQARPAAALPVETNEAVATLLSLLGER
LGSGQPLAPEKVRVFTQAAEAVIREARGGGVSAAPVQQYQPQQPPQPAQQ
YASPPPQQYQQAQYEQQAPQSSGGFEATGFDYQGEEDAWELGTRTLSGPA
PGFKAASAYQPTGTGGFDEDFDDFEKYGLPQPVTRQKKSPFMETLKGTPF
YVDIAAQPVSSDEYLKIIQNRVKEAQMKRRREEKHVGMESANFYMEELNR
QKRERLRAQAEEQSQQWQQGGQQGQQGQR*
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mRNA from alignment at scaffold_6:156723..158475-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3371 ID=mRNA_3371|Name=jgi.p|Nanoce1779_2|581914|organism=Nannochloropsis oceanica|type=mRNA|length=1753bp|location=Sequence derived from alignment at scaffold_6:156723..158475- (Nannochloropsis oceanica)
CTCTCCTGGTGATGAGGAGTTTTGTCGCGTAAGACTGATTTTTGGGTGTG
GTAGTGTTGGAAGAAGCGTCAAGCATGGAAGAAATCTACTGAGACCACAT
CAGTGAGTTTGCCGAAGAATACATCAGGTAGCGAGCTGTTTTGTGTGCCC
TGTGACTTCGTTTGCTTCTCCTTCTCTGTGCTTTGGCAGGAAGCCCCCAC
ATGTAGACTGTCGATTCGACGGATACCTTGGCTATTCGCGAGCGATCACT
TTTTTCATATATCTAGCCTTTGTTTCTCCTCGGAGCAAAGTGTTCACGAA
TCACAGGCATACCAGCAACTAGCCCTGCGGCGATGCGCCGGCACCTTACA
CTTAACACGTTTAGCTCGATGATGGCAAGCAAAACAAGGCCGTACATGGA
ATGACGAAAAAGCATCTTCAACTCCTCCCCCCTGCACATACACTCACACA
CCCACACACATCACAGCCTACAAAAACGATGCCGGGCAGAAGAGTAGCCG
CTGCGGCGACCTTCCTGGTACTGTCCTCCGCGTCCTTGGTCGCAGCTTTC
CAGTTCCAGCCATCTCCCTTCTCCGTCTCCACGACGGCCCCCTCCAAACG
CGACGCTGTCGTGATGAATTCCTACCAAGAGCAACTTGCCCGGGCCAAGG
CCGAAAAGGCTGCCCGCCAAGCCGGTCAGGGCATGGCGCCTCGGCAGCAG
CAGTACATGGCGCACCCTGAAGCAAGCCATCCCCCTTCTCCTTCTCCCCC
CCCTCCTGCCCAGTACCAGCAGCAAGCACGACCGGCCGCCGCCTTGCCCG
TTGAGACCAACGAGGCCGTCGCAACCTTACTCTCTTTGCTTGGTGAGCGT
CTGGGCTCCGGCCAGCCTCTGGCCCCGGAAAAAGTGCGGGTCTTCACTCA
AGCGGCGGAAGCAGTCATTCGAGAGGCACGTGGTGGTGGCGTGAGCGCAG
CGCCCGTCCAACAGTATCAACCGCAGCAGCCCCCGCAGCCGGCGCAGCAG
TATGCATCGCCGCCTCCACAGCAGTACCAGCAGGCGCAGTATGAGCAGCA
GGCGCCGCAGTCCTCAGGAGGATTTGAAGCCACGGGTTTTGATTACCAAG
GCGAGGAGGACGCTTGGGAATTAGGGACACGGACGTTGTCCGGCCCCGCG
CCGGGATTTAAGGCCGCGTCAGCGTACCAGCCGACTGGCACTGGAGGTTT
CGATGAGGATTTTGACGATTTCGAGAAGTACGGCTTGCCACAACCAGTGA
CGCGGCAGAAGAAGAGTCCGTTCATGGAGACGCTCAAAGGTACTCCATTT
TATGTGGATATTGCGGCGCAGCCCGTCAGCTCGGACGAGTACTTGAAGAT
CATCCAGAACCGAGTGAAGGAGGCGCAGATGAAGCGAAGGCGAGAGGAGA
AGCACGTGGGGATGGAATCAGCAAATTTTTACATGGAAGAGCTGAACAGG
CAGAAGCGAGAGCGGTTGCGTGCGCAGGCGGAGGAGCAGTCCCAGCAATG
GCAACAGGGGGGGCAGCAGGGGCAGCAGGGGCAGCGGTAGAGAGTGTAGT
AGGGTTGGTGGGATATGGTAGGTCGGTGGGGTGAATTAAGTGAATCAAAA
GGGGACCAAACTCGACGGATGGAATGTTGGGAGGAACATCGTTGGTATCT
TGGGATGGAAAGAGGGGAAGGGGGAAGGAGGAGGGGAGGGAAGGAAAAAG
AAGAAAGAATCTTCCTCCACCATTTTTTCCAGTATGTCATGTGGGGGGTT
TGG
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Coding sequence (CDS) from alignment at scaffold_6:156723..158475-

>mRNA_3371 ID=mRNA_3371|Name=jgi.p|Nanoce1779_2|581914|organism=Nannochloropsis oceanica|type=CDS|length=1140bp|location=Sequence derived from alignment at scaffold_6:156723..158475- (Nannochloropsis oceanica)
ATGACGAAAAAGCATCTTCAACTCCTCCCCCCTGCACATACACTCACACA
CCCACACACATCACAGCCTACAAAAACGATGCCGGGCAGAAGAGTAGCCG
CTGCGGCGACCTTCCTGGTACTGTCCTCCGCGTCCTTGGTCGCAGCTTTC
CAGTTCCAGCCATCTCCCTTCTCCGTCTCCACGACGGCCCCCTCCAAACG
CGACGCTGTCGTGATGAATTCCTACCAAGAGCAACTTGCCCGGGCCAAGG
CCGAAAAGGCTGCCCGCCAAGCCGGTCAGGGCATGGCGCCTCGGCAGCAG
CAGTACATGGCGCACCCTGAAGCAAGCCATCCCCCTTCTCCTTCTCCCCC
CCCTCCTGCCCAGTACCAGCAGCAAGCACGACCGGCCGCCGCCTTGCCCG
TTGAGACCAACGAGGCCGTCGCAACCTTACTCTCTTTGCTTGGTGAGCGT
CTGGGCTCCGGCCAGCCTCTGGCCCCGGAAAAAGTGCGGGTCTTCACTCA
AGCGGCGGAAGCAGTCATTCGAGAGGCACGTGGTGGTGGCGTGAGCGCAG
CGCCCGTCCAACAGTATCAACCGCAGCAGCCCCCGCAGCCGGCGCAGCAG
TATGCATCGCCGCCTCCACAGCAGTACCAGCAGGCGCAGTATGAGCAGCA
GGCGCCGCAGTCCTCAGGAGGATTTGAAGCCACGGGTTTTGATTACCAAG
GCGAGGAGGACGCTTGGGAATTAGGGACACGGACGTTGTCCGGCCCCGCG
CCGGGATTTAAGGCCGCGTCAGCGTACCAGCCGACTGGCACTGGAGGTTT
CGATGAGGATTTTGACGATTTCGAGAAGTACGGCTTGCCACAACCAGTGA
CGCGGCAGAAGAAGAGTCCGTTCATGGAGACGCTCAAAGGTACTCCATTT
TATGTGGATATTGCGGCGCAGCCCGTCAGCTCGGACGAGTACTTGAAGAT
CATCCAGAACCGAGTGAAGGAGGCGCAGATGAAGCGAAGGCGAGAGGAGA
AGCACGTGGGGATGGAATCAGCAAATTTTTACATGGAAGAGCTGAACAGG
CAGAAGCGAGAGCGGTTGCGTGCGCAGGCGGAGGAGCAGTCCCAGCAATG
GCAACAGGGGGGGCAGCAGGGGCAGCAGGGGCAGCGGTAG
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Synonyms
Publications