jgi.p|Nanoce1779_2|583236, mRNA_3734 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|583236
Unique NamemRNA_3734
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1114
Alignment locationscaffold_6:1095430..1096931 +

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Properties
Property NameValue
TranscriptId583322
TrackFilteredModels2
ProteinId583236
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:1095430..1096931 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583236gene_3734Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583236mRNA_3734-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3734CDS_3734Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3734 ID=mRNA_3734|Name=jgi.p|Nanoce1779_2|583236|organism=Nannochloropsis oceanica|type=mRNA|length=1114bp
AGCGACACACAGCCCGCAAGGCCACACAGACCCTCTTCTTATCGGATGGG
TCAGGTATACCGGGGTCCCTGTCGCTGCCTCCTCGTCCTTCTGATTGCAT
TTTTCAGTTTATGTCTCAAGAAAGTCTCATGTTTTGGGCACGATTCCGCC
CCAGGAGAAGCAGCAGGCCGAAACCCTCCTGTCTTGCCACAGGATAGGGA
AGATATAACCGAGTGGTTTATTCGAACGTCACCTCTCAAAGTATTGATGG
AAGTCTTCCACCAGCTGCCACCACCTTCAAAGTCCTTGGATGGAGAGTAC
TTGGGAGAGTTGCTCGACTCCGGCAGCGACTTAAGTAACCTTTTGGCTTA
CACAGGTTTCTACAATCCTGAAATAACAGGGTTTTGGATTGGCAAAGGTT
TTCGAGCGGAGGAAAAGTGGGGCTATAACCTTTTCATGGTGAACCAGGTC
TTGACACGGAAATACAAAATGATCGTCAGCTTTAACGAGTCGGTGTGGGA
CGACAATCCAAGCTTCGTCCTCGATTACCGCGGTCAAGATCACGTGCTGG
GATACGCTCATATGAGAGATGAAGTTCGCGAAATAAGACCAGGGATGTTT
CTAGGTATAGGAACGTGGGGATGGTCGACAGAAATGCAAAGGCAGCCAGC
ACCGTTCATCTTGCGGGGGCCTAAGAATCCTGCGGCATCCGAAAATTTCA
AGGAGGAGAATGGGATTACTTTCCGCGAGTTCTCATGAACTACGCGCCCT
TTTTTTGGCTTGAGCGCTTAAATTAATATGTTCATCAATATGTGCGATGA
TAAAAGAAGGGAGATCGAGAATGCAGGCAGCAATGGGAGACCGCGGGCGG
GGGGCCCGTTTCAAGGTGCATATCCATGTGTGTGAGATGCCAGCCAAAAT
AAATAGAGGGGAAAAGAGAAAGTGTTCGAGAAATCAAAAGAGAATGCGGG
CAAAGAATGGCCTTTGGGCCGGGACAGTTAAAATTCAAATAGAATCAAGA
ATTTTAGGCCGGTAACGAGCAATTTAATGTTATAATATGATTGTAATGCA
ATGTAATAAAGGAGAAGAAGAGGGAGAAGGCAAATTCTTCAAAGAACATG
ACAATCGCAGATAA
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protein sequence of jgi.p|Nanoce1779_2|583236

>mRNA_3734-protein ID=mRNA_3734-protein|Name=jgi.p|Nanoce1779_2|583236|organism=Nannochloropsis oceanica|type=polypeptide|length=231bp
MGQVYRGPCRCLLVLLIAFFSLCLKKVSCFGHDSAPGEAAGRNPPVLPQD
REDITEWFIRTSPLKVLMEVFHQLPPPSKSLDGEYLGELLDSGSDLSNLL
AYTGFYNPEITGFWIGKGFRAEEKWGYNLFMVNQVLTRKYKMIVSFNESV
WDDNPSFVLDYRGQDHVLGYAHMRDEVREIRPGMFLGIGTWGWSTEMQRQ
PAPFILRGPKNPAASENFKEENGITFREFS*
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mRNA from alignment at scaffold_6:1095430..1096931+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3734 ID=mRNA_3734|Name=jgi.p|Nanoce1779_2|583236|organism=Nannochloropsis oceanica|type=mRNA|length=1502bp|location=Sequence derived from alignment at scaffold_6:1095430..1096931+ (Nannochloropsis oceanica)
AGCGACACACAGCCCGCAAGGCCACACAGACCCTCTTCTTATCGGATGGG
TCAGGTATACCGGGGTCCCTGTCGCTGCCTCCTCGTCCTTCTGATTGCAT
TTTTCAGTTTATGTCTCAAGAAAGTCTCATGTTTTGGGCACGATTCCGCC
CCAGGAGAAGCAGCAGGCCGAAACCCTCCTGTCTTGCCACAGGATAGGGA
AGATATAACCGAGTGGTTTATTCGAACGTCACCTCTCAAAGTATTGATGG
AAGTCTTCCACCAGCTGCCACCACCTTCAAAGTCCTTGGATGGAGAGTAC
TTGGGAGAGTTGCTCGAGTAAGTGAAATCTAAGAAAGAAGCAGAAGGCGA
TTTAGAATTCAGTTGTCCTTCCTGCACCACATCCCTGCCCTCACTTCCTC
CCTCCCTCCCTTCTCAGAATATCAGCAGCCGCAGCCAATTTGACATGTTT
CACAATGAACACTTCCTGCTATGTACTGCATTATTTTCTTCTCATATCCT
CCTCTGTCATTTTCCTTGTCCTCTTTCAAATCTCCACAGCTCCGGCAGCG
ACTTAAGTAACCTTTTGGCTTACACAGGTTTCTACAATCCTGAAATAACA
GGGTTTTGGATTGGCAAAGGTTTTCGAGCGGAGGAAAAGTGGGGCTATAA
CCTTTTCATGGTGAACCAGGTCTTGACACGGTGGGTAGGAGACGAGGAAG
GAAGGGCGAAAAAGGCGGCAGGAAGGGAAAATGAAAAAGAGGCTCTTACA
GATGGGGCGATATCTTTTCAATCCGCGAATCACGGCTTCATTTCAATGCA
TTTATGTTTTTTTGGGCATTTCTGTCTTCTCTTTCCTCCTTAACAGGAAA
TACAAAATGATCGTCAGCTTTAACGAGTCGGTGTGGGACGACAATCCAAG
CTTCGTCCTCGATTACCGCGGTCAAGATCACGTGCTGGGATACGCTCATA
TGAGAGATGAAGTTCGCGAAATAAGACCAGGGATGTTTCTAGGTATAGGA
ACGTGGGGATGGTCGACAGAAATGCAAAGGCAGCCAGCACCGTTCATCTT
GCGGGGGCCTAAGAATCCTGCGGCATCCGAAAATTTCAAGGAGGAGAATG
GGATTACTTTCCGCGAGTTCTCATGAACTACGCGCCCTTTTTTTGGCTTG
AGCGCTTAAATTAATATGTTCATCAATATGTGCGATGATAAAAGAAGGGA
GATCGAGAATGCAGGCAGCAATGGGAGACCGCGGGCGGGGGGCCCGTTTC
AAGGTGCATATCCATGTGTGTGAGATGCCAGCCAAAATAAATAGAGGGGA
AAAGAGAAAGTGTTCGAGAAATCAAAAGAGAATGCGGGCAAAGAATGGCC
TTTGGGCCGGGACAGTTAAAATTCAAATAGAATCAAGAATTTTAGGCCGG
TAACGAGCAATTTAATGTTATAATATGATTGTAATGCAATGTAATAAAGG
AGAAGAAGAGGGAGAAGGCAAATTCTTCAAAGAACATGACAATCGCAGAT
AA
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Coding sequence (CDS) from alignment at scaffold_6:1095430..1096931+

>mRNA_3734 ID=mRNA_3734|Name=jgi.p|Nanoce1779_2|583236|organism=Nannochloropsis oceanica|type=CDS|length=2079bp|location=Sequence derived from alignment at scaffold_6:1095430..1096931+ (Nannochloropsis oceanica)
ATGGGTCAGGTATACCGGGGTCCCTGTCGCTGCCTCCTCGTCCTTCTGAT
TGCATTTTTCAGTTTATGTCTCAAGAAAGTCTCATGTTTTGGGCACGATT
CCGCCCCAGGAGAAGCAGCAGGCCGAAACCCTCCTGTCTTGCCACAGGAT
AGGGAAGATATAACCGAGTGGTTTATTCGAACGTCACCTCTCAAAGTATT
GATGGAAGTCTTCCACCAGCTGCCACCACCTTCAAAGTCCTTGGATGGAG
AGTACTTGGGAGAGTTGCTCGACTCCGGCAGCGACTTAAGTAACCTTTTG
GCTTACACAGGTTTCTACAATCCTGAAATAACAGGGTTTTGGATTGGCAA
AGGTTTTCGAGCGGAGGAAAAGTGGGGCTATAACCTTTTCATGGTGAACC
AGGTCTTGACACGGAAATACAAAATGATCGTCAGCTTTAACGAGTCGGTG
TGGGACGACAATCCAAGCTTCGTCCTCGATTACCGCGGTCAAGATCACGT
GCTGGGATACGCTCATATGAGAGATGAAGTTCGCGAAATAAGACCAGGGA
TGTTTCTAGGTATAGGAACGTGGGGATGGTCGACAGAAATGCAAAGGCAG
CCAGCACCGTTCATCTTGCGGGGGCCTAAGAATCCTGCGGCATCCGAAAA
TTTCAAGGAGGAGAATGGGATTACTTTCCGCGAGTTCTCATGAATGGGTC
AGGTATACCGGGGTCCCTGTCGCTGCCTCCTCGTCCTTCTGATTGCATTT
TTCAGTTTATGTCTCAAGAAAGTCTCATGTTTTGGGCACGATTCCGCCCC
AGGAGAAGCAGCAGGCCGAAACCCTCCTGTCTTGCCACAGGATAGGGAAG
ATATAACCGAGTGGTTTATTCGAACGTCACCTCTCAAAGTATTGATGGAA
GTCTTCCACCAGCTGCCACCACCTTCAAAGTCCTTGGATGGAGAGTACTT
GGGAGAGTTGCTCGACTCCGGCAGCGACTTAAGTAACCTTTTGGCTTACA
CAGGTTTCTACAATCCTGAAATAACAGGGTTTTGGATTGGCAAAGGTTTT
CGAGCGGAGGAAAAGTGGGGCTATAACCTTTTCATGGTGAACCAGGTCTT
GACACGGAAATACAAAATGATCGTCAGCTTTAACGAGTCGGTGTGGGACG
ACAATCCAAGCTTCGTCCTCGATTACCGCGGTCAAGATCACGTGCTGGGA
TACGCTCATATGAGAGATGAAGTTCGCGAAATAAGACCAGGGATGTTTCT
AGGTATAGGAACGTGGGGATGGTCGACAGAAATGCAAAGGCAGCCAGCAC
CGTTCATCTTGCGGGGGCCTAAGAATCCTGCGGCATCCGAAAATTTCAAG
GAGGAGAATGGGATTACTTTCCGCGAGTTCTCATGAATGGGTCAGGTATA
CCGGGGTCCCTGTCGCTGCCTCCTCGTCCTTCTGATTGCATTTTTCAGTT
TATGTCTCAAGAAAGTCTCATGTTTTGGGCACGATTCCGCCCCAGGAGAA
GCAGCAGGCCGAAACCCTCCTGTCTTGCCACAGGATAGGGAAGATATAAC
CGAGTGGTTTATTCGAACGTCACCTCTCAAAGTATTGATGGAAGTCTTCC
ACCAGCTGCCACCACCTTCAAAGTCCTTGGATGGAGAGTACTTGGGAGAG
TTGCTCGACTCCGGCAGCGACTTAAGTAACCTTTTGGCTTACACAGGTTT
CTACAATCCTGAAATAACAGGGTTTTGGATTGGCAAAGGTTTTCGAGCGG
AGGAAAAGTGGGGCTATAACCTTTTCATGGTGAACCAGGTCTTGACACGG
AAATACAAAATGATCGTCAGCTTTAACGAGTCGGTGTGGGACGACAATCC
AAGCTTCGTCCTCGATTACCGCGGTCAAGATCACGTGCTGGGATACGCTC
ATATGAGAGATGAAGTTCGCGAAATAAGACCAGGGATGTTTCTAGGTATA
GGAACGTGGGGATGGTCGACAGAAATGCAAAGGCAGCCAGCACCGTTCAT
CTTGCGGGGGCCTAAGAATCCTGCGGCATCCGAAAATTTCAAGGAGGAGA
ATGGGATTACTTTCCGCGAGTTCTCATGA
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Synonyms
Publications