jgi.p|Nanoce1779_2|373910, mRNA_10290 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|373910
Unique NamemRNA_10290
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length985
Alignment locationscaffold_60:1171..2155 -

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Properties
Property NameValue
TranscriptId373996
TrackFilteredModels2
ProteinId373910
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:1171..2155 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|373910gene_10290Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|373910mRNA_10290-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10290CDS_10290Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10290 ID=mRNA_10290|Name=jgi.p|Nanoce1779_2|373910|organism=Nannochloropsis oceanica|type=mRNA|length=985bp
GCGACCTGCTGACGCCTTCCGAGGTCGAAGGTTATGTCAACGTCCAACCT
TCGGCGCGCGCGGCGTGTGTGGCCAGTGAGATCAAGGGCATTGCGCAGCT
TTTGGCGCGGAACGTGGAGTTCGGCTTTTTGTATTACAGCAAGATAAGCC
AGTGTCTGCAGTTGTCTTTAGACTCGCAAGAGACTCTGTACCGCATCGTG
ACCACGCCGGTTCCTATCCCTACACCTGGATTCTGAATGCGATGCTGGTG
GTGTTTATCTACTCCGTACCTTTTTTGTACGAATCTAAAAGGGGTGGATC
TTATTTTGGGATGATCATTTTGGTAGTGGCGTACTTTGGGTGCCAGCGAA
TTGCGCAGCAGTGCGAGAATCCCTTGGAGTGGGACGCCTGCGATCTCGAC
GTCGAGCTCTTGACCATGAGTAACCATGACGACACGCGCGACATTTCCAA
CTTTACGCACAGCCTCAACAAGGGCTTCATCCCCAGCAATATTCGTCGCA
CTGCCCCTGAGCCTCCCGCGCCTGTCCCTGACCTGGCCACTACCACCCCT
CCGGAGCCCGAAGGAGAGGCAACAACGCCAACCAATCCCAAGGGGGAGGC
AACAACTCTGATCAAGCCCACGTCGTCTATGGCTGAAGAGACTGGGTCGC
CCAAGTCGGCTGCGACCGCACCATCGTCGTCCGTGCTCGCCGATGCAAAA
GTAGTGAGCCGTGAGAGTGATAAGTGATGATACGCACAGAAAACGAAGTT
ATTTTTCCTCCAAATACTTCTCTTTTTAAATCGCCATAATGTGGTTTGCC
ACCAGCTTGCATGGTGATATATATTTTACCACATAATTAGCAACAATAAA
TAAATAAATAAATAGGCCCGCCCGGCTAACCTGAACATCATCATACAGCC
TTCCTTGGATCCCTCAATCAACAAAAAGCGCGAAGCGCGAAGCGCAAAAT
TAAAACAAAAACACACTAAATACCATGAACCGTAC
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protein sequence of jgi.p|Nanoce1779_2|373910

>mRNA_10290-protein ID=mRNA_10290-protein|Name=jgi.p|Nanoce1779_2|373910|organism=Nannochloropsis oceanica|type=polypeptide|length=162bp
MLVVFIYSVPFLYESKRGGSYFGMIILVVAYFGCQRIAQQCENPLEWDAC
DLDVELLTMSNHDDTRDISNFTHSLNKGFIPSNIRRTAPEPPAPVPDLAT
TTPPEPEGEATTPTNPKGEATTLIKPTSSMAEETGSPKSAATAPSSSVLA
DAKVVSRESDK*
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mRNA from alignment at scaffold_60:1171..2155-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10290 ID=mRNA_10290|Name=jgi.p|Nanoce1779_2|373910|organism=Nannochloropsis oceanica|type=mRNA|length=985bp|location=Sequence derived from alignment at scaffold_60:1171..2155- (Nannochloropsis oceanica)
GCGACCTGCTGACGCCTTCCGAGGTCGAAGGTTATGTCAACGTCCAACCT
TCGGCGCGCGCGGCGTGTGTGGCCAGTGAGATCAAGGGCATTGCGCAGCT
TTTGGCGCGGAACGTGGAGTTCGGCTTTTTGTATTACAGCAAGATAAGCC
AGTGTCTGCAGTTGTCTTTAGACTCGCAAGAGACTCTGTACCGCATCGTG
ACCACGCCGGTTCCTATCCCTACACCTGGATTCTGAATGCGATGCTGGTG
GTGTTTATCTACTCCGTACCTTTTTTGTACGAATCTAAAAGGGGTGGATC
TTATTTTGGGATGATCATTTTGGTAGTGGCGTACTTTGGGTGCCAGCGAA
TTGCGCAGCAGTGCGAGAATCCCTTGGAGTGGGACGCCTGCGATCTCGAC
GTCGAGCTCTTGACCATGAGTAACCATGACGACACGCGCGACATTTCCAA
CTTTACGCACAGCCTCAACAAGGGCTTCATCCCCAGCAATATTCGTCGCA
CTGCCCCTGAGCCTCCCGCGCCTGTCCCTGACCTGGCCACTACCACCCCT
CCGGAGCCCGAAGGAGAGGCAACAACGCCAACCAATCCCAAGGGGGAGGC
AACAACTCTGATCAAGCCCACGTCGTCTATGGCTGAAGAGACTGGGTCGC
CCAAGTCGGCTGCGACCGCACCATCGTCGTCCGTGCTCGCCGATGCAAAA
GTAGTGAGCCGTGAGAGTGATAAGTGATGATACGCACAGAAAACGAAGTT
ATTTTTCCTCCAAATACTTCTCTTTTTAAATCGCCATAATGTGGTTTGCC
ACCAGCTTGCATGGTGATATATATTTTACCACATAATTAGCAACAATAAA
TAAATAAATAAATAGGCCCGCCCGGCTAACCTGAACATCATCATACAGCC
TTCCTTGGATCCCTCAATCAACAAAAAGCGCGAAGCGCGAAGCGCAAAAT
TAAAACAAAAACACACTAAATACCATGAACCGTAC
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Coding sequence (CDS) from alignment at scaffold_60:1171..2155-

>mRNA_10290 ID=mRNA_10290|Name=jgi.p|Nanoce1779_2|373910|organism=Nannochloropsis oceanica|type=CDS|length=486bp|location=Sequence derived from alignment at scaffold_60:1171..2155- (Nannochloropsis oceanica)
ATGCTGGTGGTGTTTATCTACTCCGTACCTTTTTTGTACGAATCTAAAAG
GGGTGGATCTTATTTTGGGATGATCATTTTGGTAGTGGCGTACTTTGGGT
GCCAGCGAATTGCGCAGCAGTGCGAGAATCCCTTGGAGTGGGACGCCTGC
GATCTCGACGTCGAGCTCTTGACCATGAGTAACCATGACGACACGCGCGA
CATTTCCAACTTTACGCACAGCCTCAACAAGGGCTTCATCCCCAGCAATA
TTCGTCGCACTGCCCCTGAGCCTCCCGCGCCTGTCCCTGACCTGGCCACT
ACCACCCCTCCGGAGCCCGAAGGAGAGGCAACAACGCCAACCAATCCCAA
GGGGGAGGCAACAACTCTGATCAAGCCCACGTCGTCTATGGCTGAAGAGA
CTGGGTCGCCCAAGTCGGCTGCGACCGCACCATCGTCGTCCGTGCTCGCC
GATGCAAAAGTAGTGAGCCGTGAGAGTGATAAGTGA
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Synonyms
Publications