jgi.p|Nanoce1779_2|611883, mRNA_10294 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|611883
Unique NamemRNA_10294
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1045
Alignment locationscaffold_60:9551..10682 +

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Properties
Property NameValue
TranscriptId611969
TrackFilteredModels2
ProteinId611883
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:9551..10682 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611883gene_10294Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611883mRNA_10294-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10294CDS_10294Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10294 ID=mRNA_10294|Name=jgi.p|Nanoce1779_2|611883|organism=Nannochloropsis oceanica|type=mRNA|length=1045bp
GTGCTTATTGGAGATTCGATATTGGCGAGCAGCGATACCCAAGGGGGACT
GGGGGCGATTAATAAGTACTTGAACGAGTTTTTCCGGCCAGAAGCTCAAT
AATTACGCTAAGATCGGCTCGAGTTTGCACGATGGGCGGGTGAAGAGCAT
TCCTCAATTGTACCAGGACATGCGAACCCAGACGGCGCCTGCCGTACCCT
CGACCATTGTGCTGAATGGAGGAGGCAACGACGTCATCTCTGTGCGAGAT
GACTGCTGGGCCTTCAATGATAAGTGCCAGCTTCAGATTGATAGTGCCAT
GGAAATCGCGGAGGATTTAATGTTGCGAATGCATGACGACGGGGTGCAGC
ACATTATTTACCTGGGCTTTTACTACGCTTTCAACATGACCCAGGCGGTA
GACTATGGCACCGAAAGGGTCAAACGGGTGTGCAGAGATGCGGCTATTGA
TTGTTTCGTAGCGGATGTGCGGGACCTTGACGTCGTCGTTGGGCCGGATG
GCTTGCACCCAGATGACGCAGGTTATCGTCACTTAGCTGACCGTATTTGG
GAGACAAAGCAGGAGTACAACATACCGTTCTAGTCGCCGCTGTGGGAGAC
ACAGCAAGAGATCGACAGTGTGTCCTTTTGATATCTGGTTATGTTGAGTT
CGCCTACAAGATAGGTGAATAGATAAAAATCCAATTGTAAATAAGCGCAG
TGACATGAATGTGGCATCTCAACAAATATAAGATTAGAGTGATCACTCGA
AGGTAAAAAGTATCTCGAAGCGCAAACATTAGCTCACCAAGGAGGCACTT
GGGACATCCATTTCTCTGCCCATTTCTCTGCCCATTTCTGTAAATGTATA
AAATATCATGATTTTGTGTGAGAGTGCACAATCTAAGATGAGTTTTGCCT
CCTTGCAGTTTTCGAATGCAGGGTACCAAAAAGAAAGACAGGAGGTTTCT
GAACAACATGGCGGAGGAAAGAAAGCAATGAGCGACTTAAGAACCAGGTG
GGGGCAATAAAGCTTGATACCAAAAGAATAGATCATGAGTGTGCA
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protein sequence of jgi.p|Nanoce1779_2|611883

>mRNA_10294-protein ID=mRNA_10294-protein|Name=jgi.p|Nanoce1779_2|611883|organism=Nannochloropsis oceanica|type=polypeptide|length=138bp
MRTQTAPAVPSTIVLNGGGNDVISVRDDCWAFNDKCQLQIDSAMEIAEDL
MLRMHDDGVQHIIYLGFYYAFNMTQAVDYGTERVKRVCRDAAIDCFVADV
RDLDVVVGPDGLHPDDAGYRHLADRIWETKQEYNIPF*
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mRNA from alignment at scaffold_60:9551..10682+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10294 ID=mRNA_10294|Name=jgi.p|Nanoce1779_2|611883|organism=Nannochloropsis oceanica|type=mRNA|length=1132bp|location=Sequence derived from alignment at scaffold_60:9551..10682+ (Nannochloropsis oceanica)
GTGCTTATTGGAGATTCGATATTGGCGAGCAGCGATACCCAAGGGGGACT
GGGGGCGATTAATAAGTACTTGAACGAGTTTTTCCGGCCAGAAGCTCAAT
AATTACGCTAAGATCGGCTCGAGTTTGCACGATGGGCGGGTGAAGAGCAT
TCCTCAATTGTACCAGGACATGCGAACCCAGACGGCGCCTGCCGTACCCT
CGACCATTGTGCTGAATGGAGGAGGCAACGACGTCATCTCTGTGCGAGAT
GACTGCTGGGCCTTCAATGATAAGTGCCAGCTTCAGATTGATAGTGCCAT
GGAAATCGCGGAGGATTTAATGTTGCGAATGCATGACGACGGGGTGCAGC
ACATTATTTACCTGGGCTTTTACTACGCTTTCAACATGACCCAGGCGGTA
GACTATGGCACCGAAAGGGTCAAACGGGTGTGCAGAGATGCGGCTATTGA
TTGTTTCGTAGCGGATGTGCGGGACCTTGACGTCGTCGTTGGGCCGGATG
GCTTGCACCCAGGTAACTATATATGTGTCGTGCACCTCTTCTATCCGCGA
AGGCCTACATCACTACTCTTCAACCTCACGAATCGCCTCACATCTCCAGA
TGACGCAGGTTATCGTCACTTAGCTGACCGTATTTGGGAGACAAAGCAGG
AGTACAACATACCGTTCTAGTCGCCGCTGTGGGAGACACAGCAAGAGATC
GACAGTGTGTCCTTTTGATATCTGGTTATGTTGAGTTCGCCTACAAGATA
GGTGAATAGATAAAAATCCAATTGTAAATAAGCGCAGTGACATGAATGTG
GCATCTCAACAAATATAAGATTAGAGTGATCACTCGAAGGTAAAAAGTAT
CTCGAAGCGCAAACATTAGCTCACCAAGGAGGCACTTGGGACATCCATTT
CTCTGCCCATTTCTCTGCCCATTTCTGTAAATGTATAAAATATCATGATT
TTGTGTGAGAGTGCACAATCTAAGATGAGTTTTGCCTCCTTGCAGTTTTC
GAATGCAGGGTACCAAAAAGAAAGACAGGAGGTTTCTGAACAACATGGCG
GAGGAAAGAAAGCAATGAGCGACTTAAGAACCAGGTGGGGGCAATAAAGC
TTGATACCAAAAGAATAGATCATGAGTGTGCA
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Coding sequence (CDS) from alignment at scaffold_60:9551..10682+

>mRNA_10294 ID=mRNA_10294|Name=jgi.p|Nanoce1779_2|611883|organism=Nannochloropsis oceanica|type=CDS|length=828bp|location=Sequence derived from alignment at scaffold_60:9551..10682+ (Nannochloropsis oceanica)
ATGCGAACCCAGACGGCGCCTGCCGTACCCTCGACCATTGTGCTGAATGG
AGGAGGCAACGACGTCATCTCTGTGCGAGATGACTGCTGGGCCTTCAATG
ATAAGTGCCAGCTTCAGATTGATAGTGCCATGGAAATCGCGGAGGATTTA
ATGTTGCGAATGCATGACGACGGGGTGCAGCACATTATTTACCTGGGCTT
TTACTACGCTTTCAACATGACCCAGGCGGTAGACTATGGCACCGAAAGGG
TCAAACGGGTGTGCAGAGATGCGGCTATTGATTGTTTCGTAGCGGATGTG
CGGGACCTTGACGTCGTCGTTGGGCCGGATGGCTTGCACCCAGATGACGC
AGGTTATCGTCACTTAGCTGACCGTATTTGGGAGACAAAGCAGGAGTACA
ACATACCGTTCTAGATGCGAACCCAGACGGCGCCTGCCGTACCCTCGACC
ATTGTGCTGAATGGAGGAGGCAACGACGTCATCTCTGTGCGAGATGACTG
CTGGGCCTTCAATGATAAGTGCCAGCTTCAGATTGATAGTGCCATGGAAA
TCGCGGAGGATTTAATGTTGCGAATGCATGACGACGGGGTGCAGCACATT
ATTTACCTGGGCTTTTACTACGCTTTCAACATGACCCAGGCGGTAGACTA
TGGCACCGAAAGGGTCAAACGGGTGTGCAGAGATGCGGCTATTGATTGTT
TCGTAGCGGATGTGCGGGACCTTGACGTCGTCGTTGGGCCGGATGGCTTG
CACCCAGATGACGCAGGTTATCGTCACTTAGCTGACCGTATTTGGGAGAC
AAAGCAGGAGTACAACATACCGTTCTAG
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Synonyms
Publications