|
Properties
Property Name | Value |
TranscriptId | 612078 |
Track | FilteredModels2 |
ProteinId | 611992 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_61 | supercontig | scaffold_61:11232..13026 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_10642 ID=mRNA_10642|Name=jgi.p|Nanoce1779_2|611992|organism=Nannochloropsis oceanica|type=mRNA|length=1795bp ATCGGCTTAATGAGCTAGGGTACAAGGTCATGCTTTCAGTACCAGAATGC CCATGGGCAGAAAATGTACTCGAAATTGCACGAACGCTACTTGGAAATCA TTTCGTCAACCTCCGGGAGCTTGAAGATTCAAAACGACTCCTGTCGTTTC AAGAAGTAATCCTTGTTCACCAGGCGCCTTCCAAGGTGTCCTTTTTGAGT TTTCCACAAAATGTGGTGAATATCTTGCAAAATCAATGGAACGATGGGAT TGAAAATAATGCCTACAACGTTTTCCTAACTCGTAGTACCACCAATGTGT ATCGAATACTCGAGAATCATGGCGAGGTTGAACACTTCTTTCGAACTCAT GGGTTTTTGATTATCGATCCAGAATCTCATTCGAATGAAGCTCTTTTCAA CTTGCTGAAAAACGCTAGAAACATAGTAATCACCAACGGCTCAGCCCTCT CCAGTCTGATTTTTTTCAGGCTCACAAGTAGAATATTTTGCCTCAATTCT GCCGGATATCAACCGAAGTGGCGCCAGGGCATCGCATCGGAAAGAGATCT TCCTTCCGATGCCAAAGAAAGAGAAGATTTTGAGAAGAGAATCTGGAGAA ATGCAGTGAGTCGATTCAATTTCACCTATGTTGATGCATTTATGAACCGT ATATCTGATGAGCAGTTGAATGATGTTATTGCGGCGGTGAATAAGGATGT CATGAGCCATAATGCGACAACTCAGTGACACTTGACCGTTTGAGTGTAAC TATTAAGAGCCATTATAATTAAACGAGATAAAAGCATCAGCCGATGCAAC AAAACCATGCTTGTCATAGGAGAAATGAGTAACAAAATGTGAATGATCGG AGGTAGCACACTGATAAGGAGAGTGAAGCCACATACAAAGACAGCCATGA GACTCAATACAAGAAAAAACATAATTTCTAAGGATCAAAGCATCAAGTAT GTTCTCTACTTTCAAGCAAGGGCGGACACGTGATCCGATATCTCGTCCCG GGTCGACCCGGTATGGCCGTCAACCCAGCGGAGGGATGTGTTGTGGGAGG AGTGGGTCAGGTGTTAGCCCCTACCCTCAACCGTCGTGAGCTTCGATGGG CGCCCCCCCCTCCCTCAGCGGAAATCCTCGTTTAGATCATTTCGATACTT GGTCACCCGGGGACCCGTGACCAGACCCGGGTCTTTCTTTGACCTAGGTC CACTTCCTGTTTATGCCGTATACGATCTATCCTTCCTCCACAGGGCCTGT CCACGGCAGTCCACGCCTAAATTTTTCCCAAAATGATCTGACGAGATGAT TTTGCGAGAGTTTAGCCATGGAGGGTGTTTCTCCACCTTTTTTGTTTCTC TTTCGCCACAATGAACCGATTATTCTAAAAAGTGTTCACTTTTCTTCTTC TCGCCGGTGCGATTCCAGGGCTGTGCCGAACATGATGTTCAATTTTTATA CCATAAGCTGTGTCTCGCGTAAATGTACCTGGAACGAACGTCGACGCGTC ATGTCAACGTCACGTCACATCAACCCCACGTCGACGTGACGACTCGGACG TCGTGGGGTTGAAGTATGGACTTCTTGCTTCTAAAGGCCAGAAACAGCGA CTTTGTGTTCACGGAAAAATTATGCTTTTTTGTCAGCCCTCAGATCATGG AATAGCAGTCCCTCTCAATTCCTTACCATGCACACTTTTCTCACTAATCA TGAAGATATATAGATGTTTATCAAAGATCCACAAAATATTTCGACAAATT AAGATGCTCAAGCAGAATCAATATTTATCTCACAAACCAATCAAT back to topprotein sequence of jgi.p|Nanoce1779_2|611992 >mRNA_10642-protein ID=mRNA_10642-protein|Name=jgi.p|Nanoce1779_2|611992|organism=Nannochloropsis oceanica|type=polypeptide|length=233bp MLSVPECPWAENVLEIARTLLGNHFVNLRELEDSKRLLSFQEVILVHQAP SKVSFLSFPQNVVNILQNQWNDGIENNAYNVFLTRSTTNVYRILENHGEV EHFFRTHGFLIIDPESHSNEALFNLLKNARNIVITNGSALSSLIFFRLTS RIFCLNSAGYQPKWRQGIASERDLPSDAKEREDFEKRIWRNAVSRFNFTY VDAFMNRISDEQLNDVIAAVNKDVMSHNATTQ* back to topmRNA from alignment at scaffold_61:11232..13026- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_10642 ID=mRNA_10642|Name=jgi.p|Nanoce1779_2|611992|organism=Nannochloropsis oceanica|type=mRNA|length=1795bp|location=Sequence derived from alignment at scaffold_61:11232..13026- (Nannochloropsis oceanica) ATCGGCTTAATGAGCTAGGGTACAAGGTCATGCTTTCAGTACCAGAATGC
CCATGGGCAGAAAATGTACTCGAAATTGCACGAACGCTACTTGGAAATCA
TTTCGTCAACCTCCGGGAGCTTGAAGATTCAAAACGACTCCTGTCGTTTC
AAGAAGTAATCCTTGTTCACCAGGCGCCTTCCAAGGTGTCCTTTTTGAGT
TTTCCACAAAATGTGGTGAATATCTTGCAAAATCAATGGAACGATGGGAT
TGAAAATAATGCCTACAACGTTTTCCTAACTCGTAGTACCACCAATGTGT
ATCGAATACTCGAGAATCATGGCGAGGTTGAACACTTCTTTCGAACTCAT
GGGTTTTTGATTATCGATCCAGAATCTCATTCGAATGAAGCTCTTTTCAA
CTTGCTGAAAAACGCTAGAAACATAGTAATCACCAACGGCTCAGCCCTCT
CCAGTCTGATTTTTTTCAGGCTCACAAGTAGAATATTTTGCCTCAATTCT
GCCGGATATCAACCGAAGTGGCGCCAGGGCATCGCATCGGAAAGAGATCT
TCCTTCCGATGCCAAAGAAAGAGAAGATTTTGAGAAGAGAATCTGGAGAA
ATGCAGTGAGTCGATTCAATTTCACCTATGTTGATGCATTTATGAACCGT
ATATCTGATGAGCAGTTGAATGATGTTATTGCGGCGGTGAATAAGGATGT
CATGAGCCATAATGCGACAACTCAGTGACACTTGACCGTTTGAGTGTAAC
TATTAAGAGCCATTATAATTAAACGAGATAAAAGCATCAGCCGATGCAAC
AAAACCATGCTTGTCATAGGAGAAATGAGTAACAAAATGTGAATGATCGG
AGGTAGCACACTGATAAGGAGAGTGAAGCCACATACAAAGACAGCCATGA
GACTCAATACAAGAAAAAACATAATTTCTAAGGATCAAAGCATCAAGTAT
GTTCTCTACTTTCAAGCAAGGGCGGACACGTGATCCGATATCTCGTCCCG
GGTCGACCCGGTATGGCCGTCAACCCAGCGGAGGGATGTGTTGTGGGAGG
AGTGGGTCAGGTGTTAGCCCCTACCCTCAACCGTCGTGAGCTTCGATGGG
CGCCCCCCCCTCCCTCAGCGGAAATCCTCGTTTAGATCATTTCGATACTT
GGTCACCCGGGGACCCGTGACCAGACCCGGGTCTTTCTTTGACCTAGGTC
CACTTCCTGTTTATGCCGTATACGATCTATCCTTCCTCCACAGGGCCTGT
CCACGGCAGTCCACGCCTAAATTTTTCCCAAAATGATCTGACGAGATGAT
TTTGCGAGAGTTTAGCCATGGAGGGTGTTTCTCCACCTTTTTTGTTTCTC
TTTCGCCACAATGAACCGATTATTCTAAAAAGTGTTCACTTTTCTTCTTC
TCGCCGGTGCGATTCCAGGGCTGTGCCGAACATGATGTTCAATTTTTATA
CCATAAGCTGTGTCTCGCGTAAATGTACCTGGAACGAACGTCGACGCGTC
ATGTCAACGTCACGTCACATCAACCCCACGTCGACGTGACGACTCGGACG
TCGTGGGGTTGAAGTATGGACTTCTTGCTTCTAAAGGCCAGAAACAGCGA
CTTTGTGTTCACGGAAAAATTATGCTTTTTTGTCAGCCCTCAGATCATGG
AATAGCAGTCCCTCTCAATTCCTTACCATGCACACTTTTCTCACTAATCA
TGAAGATATATAGATGTTTATCAAAGATCCACAAAATATTTCGACAAATT
AAGATGCTCAAGCAGAATCAATATTTATCTCACAAACCAATCAAT back to topCoding sequence (CDS) from alignment at scaffold_61:11232..13026- >mRNA_10642 ID=mRNA_10642|Name=jgi.p|Nanoce1779_2|611992|organism=Nannochloropsis oceanica|type=CDS|length=699bp|location=Sequence derived from alignment at scaffold_61:11232..13026- (Nannochloropsis oceanica) ATGCTTTCAGTACCAGAATGCCCATGGGCAGAAAATGTACTCGAAATTGC ACGAACGCTACTTGGAAATCATTTCGTCAACCTCCGGGAGCTTGAAGATT CAAAACGACTCCTGTCGTTTCAAGAAGTAATCCTTGTTCACCAGGCGCCT TCCAAGGTGTCCTTTTTGAGTTTTCCACAAAATGTGGTGAATATCTTGCA AAATCAATGGAACGATGGGATTGAAAATAATGCCTACAACGTTTTCCTAA CTCGTAGTACCACCAATGTGTATCGAATACTCGAGAATCATGGCGAGGTT GAACACTTCTTTCGAACTCATGGGTTTTTGATTATCGATCCAGAATCTCA TTCGAATGAAGCTCTTTTCAACTTGCTGAAAAACGCTAGAAACATAGTAA TCACCAACGGCTCAGCCCTCTCCAGTCTGATTTTTTTCAGGCTCACAAGT AGAATATTTTGCCTCAATTCTGCCGGATATCAACCGAAGTGGCGCCAGGG CATCGCATCGGAAAGAGATCTTCCTTCCGATGCCAAAGAAAGAGAAGATT TTGAGAAGAGAATCTGGAGAAATGCAGTGAGTCGATTCAATTTCACCTAT GTTGATGCATTTATGAACCGTATATCTGATGAGCAGTTGAATGATGTTAT TGCGGCGGTGAATAAGGATGTCATGAGCCATAATGCGACAACTCAGTGA back to top
|