jgi.p|Nanoce1779_2|583700, mRNA_2886 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|583700
Unique NamemRNA_2886
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1131
Alignment locationscaffold_7:168393..169523 -

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Properties
Property NameValue
TranscriptId583786
TrackFilteredModels2
ProteinId583700
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:168393..169523 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583700gene_2886Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583700mRNA_2886-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2886CDS_2886Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2886 ID=mRNA_2886|Name=jgi.p|Nanoce1779_2|583700|organism=Nannochloropsis oceanica|type=mRNA|length=1131bp
GCTGCGGCTATTGCTGCCGGTCACGTGATGGGGAGACAGGCAGGGGGAGG
AGGAGGAGGAGGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGGGG
AGAGTGAAACCGAAACAATCCTCCTCCTCCGCGACCCCCGCGCCATCGCT
ATTCAATACCTGAGTCGGGATTTTTGGTTGGACTTGTGCCTTTCCTTCCC
GTGGTTGGCGATTGCTGCCTTACTGCTTACGCCAAAGCGGAAGAAGCGGA
ATGCAATGAGGCGGGCCTTGGGACACGTGGGCAGAGGGTTAGGTGGATTT
CTAGGGAAGTTGAAAAATGGGGTCGGCTCGAAGATACCGCGATTCTTGCG
GCCCGACAATGTGAAGAGGTTCTTCGTGTGGACTAGGCTGTTGGAGGTGA
AGAAGGTGGATGGCGTGAAGCATGTGGTGAAGTATAGGAAGGAATATAGA
GGATTGAGGATGTGTATTCGGGGAATTAAGTGGTTGTGTCGTTTCCCGGT
CGCCTCGTTTATTTGGCGCGTACATCGAAAATTGGAGGCTCACTTGGTGG
TGGCGGTGGAGGAAGTTTGGGGGGATGACCGGGAGGAAGAGAGGAAGGCA
AAGGTTTGGAGGGCGGGGCAGTCGAGGAGGGGAGGGATGGCATTGTCGCC
GTCCTTGTTGATGGTGGAGGAGGAGTGGGGAGGTTACAAAGGAGAGGAGA
ATAGATCATTCCATGGTGGGGAGGACGGGGAGAGAGGGGGGGGGGAGGCG
GAGGGATAGTGGCTCGACCGAGACAAGTGGAAATAAGGGAGGGAGGAGGA
AATGCACGGCAGTGGAGGAATTGGCATGGAGGAACACGTTCCACGCCAGA
TGATTTTGCCAGCGGAAAGATCGCGTGGACTGTTTTTGCGGGGTTGAGTG
GTGGTTGGAAGTCGGCGTGGCTGTGGTGTACCATTACCAAGAGCAAGAGA
GGGTCACGAAAACTGTTTATAACTGTTGCGAAAGTAAGTTAGGAAAGCGC
CGCGAATGCAAGACGCGCGGAATTGAAAACAAAGGGTAATGCAATGTAAT
GCGGAATTAAAATCAAAGGGTAGTGCAATTTATTTGAACTGTCGAGATGT
GGTGATGAATTTACGTTCTTGTTGTTCACTG
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protein sequence of jgi.p|Nanoce1779_2|583700

>mRNA_2886-protein ID=mRNA_2886-protein|Name=jgi.p|Nanoce1779_2|583700|organism=Nannochloropsis oceanica|type=polypeptide|length=244bp
MGRQAGGGGGGGAAAAAAAAAAAGESETETILLLRDPRAIAIQYLSRDFW
LDLCLSFPWLAIAALLLTPKRKKRNAMRRALGHVGRGLGGFLGKLKNGVG
SKIPRFLRPDNVKRFFVWTRLLEVKKVDGVKHVVKYRKEYRGLRMCIRGI
KWLCRFPVASFIWRVHRKLEAHLVVAVEEVWGDDREEERKAKVWRAGQSR
RGGMALSPSLLMVEEEWGGYKGEENRSFHGGEDGERGGGEAEG*
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mRNA from alignment at scaffold_7:168393..169523-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2886 ID=mRNA_2886|Name=jgi.p|Nanoce1779_2|583700|organism=Nannochloropsis oceanica|type=mRNA|length=1131bp|location=Sequence derived from alignment at scaffold_7:168393..169523- (Nannochloropsis oceanica)
GCTGCGGCTATTGCTGCCGGTCACGTGATGGGGAGACAGGCAGGGGGAGG
AGGAGGAGGAGGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGGGG
AGAGTGAAACCGAAACAATCCTCCTCCTCCGCGACCCCCGCGCCATCGCT
ATTCAATACCTGAGTCGGGATTTTTGGTTGGACTTGTGCCTTTCCTTCCC
GTGGTTGGCGATTGCTGCCTTACTGCTTACGCCAAAGCGGAAGAAGCGGA
ATGCAATGAGGCGGGCCTTGGGACACGTGGGCAGAGGGTTAGGTGGATTT
CTAGGGAAGTTGAAAAATGGGGTCGGCTCGAAGATACCGCGATTCTTGCG
GCCCGACAATGTGAAGAGGTTCTTCGTGTGGACTAGGCTGTTGGAGGTGA
AGAAGGTGGATGGCGTGAAGCATGTGGTGAAGTATAGGAAGGAATATAGA
GGATTGAGGATGTGTATTCGGGGAATTAAGTGGTTGTGTCGTTTCCCGGT
CGCCTCGTTTATTTGGCGCGTACATCGAAAATTGGAGGCTCACTTGGTGG
TGGCGGTGGAGGAAGTTTGGGGGGATGACCGGGAGGAAGAGAGGAAGGCA
AAGGTTTGGAGGGCGGGGCAGTCGAGGAGGGGAGGGATGGCATTGTCGCC
GTCCTTGTTGATGGTGGAGGAGGAGTGGGGAGGTTACAAAGGAGAGGAGA
ATAGATCATTCCATGGTGGGGAGGACGGGGAGAGAGGGGGGGGGGAGGCG
GAGGGATAGTGGCTCGACCGAGACAAGTGGAAATAAGGGAGGGAGGAGGA
AATGCACGGCAGTGGAGGAATTGGCATGGAGGAACACGTTCCACGCCAGA
TGATTTTGCCAGCGGAAAGATCGCGTGGACTGTTTTTGCGGGGTTGAGTG
GTGGTTGGAAGTCGGCGTGGCTGTGGTGTACCATTACCAAGAGCAAGAGA
GGGTCACGAAAACTGTTTATAACTGTTGCGAAAGTAAGTTAGGAAAGCGC
CGCGAATGCAAGACGCGCGGAATTGAAAACAAAGGGTAATGCAATGTAAT
GCGGAATTAAAATCAAAGGGTAGTGCAATTTATTTGAACTGTCGAGATGT
GGTGATGAATTTACGTTCTTGTTGTTCACTG
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Coding sequence (CDS) from alignment at scaffold_7:168393..169523-

>mRNA_2886 ID=mRNA_2886|Name=jgi.p|Nanoce1779_2|583700|organism=Nannochloropsis oceanica|type=CDS|length=732bp|location=Sequence derived from alignment at scaffold_7:168393..169523- (Nannochloropsis oceanica)
ATGGGGAGACAGGCAGGGGGAGGAGGAGGAGGAGGAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCGGGGGAGAGTGAAACCGAAACAATCCTCCTCC
TCCGCGACCCCCGCGCCATCGCTATTCAATACCTGAGTCGGGATTTTTGG
TTGGACTTGTGCCTTTCCTTCCCGTGGTTGGCGATTGCTGCCTTACTGCT
TACGCCAAAGCGGAAGAAGCGGAATGCAATGAGGCGGGCCTTGGGACACG
TGGGCAGAGGGTTAGGTGGATTTCTAGGGAAGTTGAAAAATGGGGTCGGC
TCGAAGATACCGCGATTCTTGCGGCCCGACAATGTGAAGAGGTTCTTCGT
GTGGACTAGGCTGTTGGAGGTGAAGAAGGTGGATGGCGTGAAGCATGTGG
TGAAGTATAGGAAGGAATATAGAGGATTGAGGATGTGTATTCGGGGAATT
AAGTGGTTGTGTCGTTTCCCGGTCGCCTCGTTTATTTGGCGCGTACATCG
AAAATTGGAGGCTCACTTGGTGGTGGCGGTGGAGGAAGTTTGGGGGGATG
ACCGGGAGGAAGAGAGGAAGGCAAAGGTTTGGAGGGCGGGGCAGTCGAGG
AGGGGAGGGATGGCATTGTCGCCGTCCTTGTTGATGGTGGAGGAGGAGTG
GGGAGGTTACAAAGGAGAGGAGAATAGATCATTCCATGGTGGGGAGGACG
GGGAGAGAGGGGGGGGGGAGGCGGAGGGATAG
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Synonyms
Publications