jgi.p|Nanoce1779_2|554359, mRNA_4102 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|554359
Unique Name	mRNA_4102
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1709
Alignment location	scaffold_8:842610..844318 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	554445
Track	FilteredModels2
ProteinId	554359

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:842610..844318 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|554359	gene_4102	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|554359	mRNA_4102-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4102	CDS_4102	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:842610..844318+
coding sequence from alignment at scaffold_8:842610..844318+

mRNA sequence

>mRNA_4102 ID=mRNA_4102|Name=jgi.p|Nanoce1779_2|554359|organism=Nannochloropsis oceanica|type=mRNA|length=1709bp
ATGAGACAGTCATCATCATGGCCGTTGCCGCCTTCAACTGGCGTATTCGC
CACCCCAGCAGGACAGCACTCGCCCCAATCACGCTTGTCGTCCGTAAAAA
TACGGGGCATCAGCACGCGACAGTCACAGCACCTTTACCTCTCCTCATTC
TTGGGACTCCGGCCATCGGCCTCGTTACGAACGTTACGAAGAGCCGCCAC
GTCCCACCACTCCACTCATCGTCTTCAAACCATCCACCACTCAACCCAAG
GCCCGACATCTACTGCCCAGCCCAACTGTGTCGTTCTTCATATTACCCCC
CCTCGTTCCAACCACGAGGATCGAGCACAAGAGGGATACGCCCTTCAAGA
AGCCTGTGCCTTGGCTCAAACGCTGGGCTACGCTGTTCCAATGTACGAAA
CCCTACGTCTACGTGCCATCCATCCCAAGACGTACATTGGCAAAGGCAAG
GTGGTGGAGCTAAGAGGGATGTTGCGTGCAGTGGACGCAAATGCTTTGTT
TATCAACACAGCACGCCTCACGGCTTTGCAGCAGAAAAATATAAGCGAGC
TCTGTCAAGTAAATGAAGTAAAGGACCGTATCAGCGTTATACTTGAAATA
TTCTCAAAACGCGCGAGGACCACCGAGGCGAAAGTGCAGGTAGAGCTGGC
TCAATGCAAATATGCCCTCTCTCATCTCGTTCGAGGGGCCGCGGCCGCGT
ATGAGCAGCAGAGAGGCGCGTCGGGCACTGGATTTATGGCTGGTGGAGGC
GAGAAGGCTTTAGAGATTCAACGACGATTGTTGCGACAACAGGTGAAGTT
TCTGCAAGGTAAATTAAGGGTGGTCGAGAAGAGGAGGACAGAGCAGAGGA
AACATCGACAGCAACCAAGTGTGAGTTTGGTGGGGTATACAAACGTAGGC
AAATCGTCTTTACTTAACGCTCTGACCCGTTCGGAGTCCGTTACCGTTGA
AGACCGACCATTCGAAACCCTCGATACTACCACCCGCTCCCTCTTCCTTC
CCTCCCTCGACACCCCTACTCTGTTGATCGACACAGTCGGTTTTATTTCC
CAACTTCCTTTGGAGCTCGTCGCTTCTTTTCGCGCCACGTTGGAAGAAGT
GGTGGCTGCTGACCTCTTGCTCCACGTGCGTGATGCCAGCACGATAGGCA
CACCTCTTTTCGAAGCACAGCGACGATCGGTTGACAAGGTCTTGGGGGAG
ATAGGAACACATGAACATCTTAGTAAAAGTGTTATTGAGGTGTGGAATAA
AATTGACCTGCTCGAGACAGAAGAACAGAAGGAGATGCTTCGGATGGTGA
GGGAGGCAAGGGAGGGAGGGAGGGAGGAAGGGGGGCCGCCACCGAAGTGT
GTTGTGCTGGTGTCTGCGCGGATGAAGGAGGGTTTGAATGAGCTGATAAG
GGTGGTGGGAGAGAGGTTGGTAGAAGGGGGGCATGTCAAGGTCAGGGAAG
AGGAGGAGAGGGAGGAGGCGGAGCAGGAGTCGATGCAGGGAGAGAAGGAG
TATGACGAGGAGGAGGAGATAAACAAGGAGAAGAAGACGGCGGATAAAGA
GAAAGGGGAGAAACAAATAACAAACAGGAAAGAAAAAGAAAGTTTTGAAC
ATACATGATTATACAGAGAAAAGCGCAAAGAAGTACCTTTCTTGCCTCGG
TCTGAGGAAGCACAGTCGCACGAACACGGGGCAAAAAGAAAAACGAAAAG
GAGGAGGCT

protein sequence of jgi.p|Nanoce1779_2|554359

>mRNA_4102-protein ID=mRNA_4102-protein|Name=jgi.p|Nanoce1779_2|554359|organism=Nannochloropsis oceanica|type=polypeptide|length=536bp
MRQSSSWPLPPSTGVFATPAGQHSPQSRLSSVKIRGISTRQSQHLYLSSF
LGLRPSASLRTLRRAATSHHSTHRLQTIHHSTQGPTSTAQPNCVVLHITP
PRSNHEDRAQEGYALQEACALAQTLGYAVPMYETLRLRAIHPKTYIGKGK
VVELRGMLRAVDANALFINTARLTALQQKNISELCQVNEVKDRISVILEI
FSKRARTTEAKVQVELAQCKYALSHLVRGAAAAYEQQRGASGTGFMAGGG
EKALEIQRRLLRQQVKFLQGKLRVVEKRRTEQRKHRQQPSVSLVGYTNVG
KSSLLNALTRSESVTVEDRPFETLDTTTRSLFLPSLDTPTLLIDTVGFIS
QLPLELVASFRATLEEVVAADLLLHVRDASTIGTPLFEAQRRSVDKVLGE
IGTHEHLSKSVIEVWNKIDLLETEEQKEMLRMVREAREGGREEGGPPPKC
VVLVSARMKEGLNELIRVVGERLVEGGHVKVREEEEREEAEQESMQGEKE
YDEEEEINKEKKTADKEKGEKQITNRKEKESFEHT*

mRNA from alignment at scaffold_8:842610..844318+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4102 ID=mRNA_4102|Name=jgi.p|Nanoce1779_2|554359|organism=Nannochloropsis oceanica|type=mRNA|length=1709bp|location=Sequence derived from alignment at scaffold_8:842610..844318+ (Nannochloropsis oceanica)
ATGAGACAGTCATCATCATGGCCGTTGCCGCCTTCAACTGGCGTATTCGC
CACCCCAGCAGGACAGCACTCGCCCCAATCACGCTTGTCGTCCGTAAAAA
TACGGGGCATCAGCACGCGACAGTCACAGCACCTTTACCTCTCCTCATTC
TTGGGACTCCGGCCATCGGCCTCGTTACGAACGTTACGAAGAGCCGCCAC
GTCCCACCACTCCACTCATCGTCTTCAAACCATCCACCACTCAACCCAAG
GCCCGACATCTACTGCCCAGCCCAACTGTGTCGTTCTTCATATTACCCCC
CCTCGTTCCAACCACGAGGATCGAGCACAAGAGGGATACGCCCTTCAAGA
AGCCTGTGCCTTGGCTCAAACGCTGGGCTACGCTGTTCCAATGTACGAAA
CCCTACGTCTACGTGCCATCCATCCCAAGACGTACATTGGCAAAGGCAAG
GTGGTGGAGCTAAGAGGGATGTTGCGTGCAGTGGACGCAAATGCTTTGTT
TATCAACACAGCACGCCTCACGGCTTTGCAGCAGAAAAATATAAGCGAGC
TCTGTCAAGTAAATGAAGTAAAGGACCGTATCAGCGTTATACTTGAAATA
TTCTCAAAACGCGCGAGGACCACCGAGGCGAAAGTGCAGGTAGAGCTGGC
TCAATGCAAATATGCCCTCTCTCATCTCGTTCGAGGGGCCGCGGCCGCGT
ATGAGCAGCAGAGAGGCGCGTCGGGCACTGGATTTATGGCTGGTGGAGGC
GAGAAGGCTTTAGAGATTCAACGACGATTGTTGCGACAACAGGTGAAGTT
TCTGCAAGGTAAATTAAGGGTGGTCGAGAAGAGGAGGACAGAGCAGAGGA
AACATCGACAGCAACCAAGTGTGAGTTTGGTGGGGTATACAAACGTAGGC
AAATCGTCTTTACTTAACGCTCTGACCCGTTCGGAGTCCGTTACCGTTGA
AGACCGACCATTCGAAACCCTCGATACTACCACCCGCTCCCTCTTCCTTC
CCTCCCTCGACACCCCTACTCTGTTGATCGACACAGTCGGTTTTATTTCC
CAACTTCCTTTGGAGCTCGTCGCTTCTTTTCGCGCCACGTTGGAAGAAGT
GGTGGCTGCTGACCTCTTGCTCCACGTGCGTGATGCCAGCACGATAGGCA
CACCTCTTTTCGAAGCACAGCGACGATCGGTTGACAAGGTCTTGGGGGAG
ATAGGAACACATGAACATCTTAGTAAAAGTGTTATTGAGGTGTGGAATAA
AATTGACCTGCTCGAGACAGAAGAACAGAAGGAGATGCTTCGGATGGTGA
GGGAGGCAAGGGAGGGAGGGAGGGAGGAAGGGGGGCCGCCACCGAAGTGT
GTTGTGCTGGTGTCTGCGCGGATGAAGGAGGGTTTGAATGAGCTGATAAG
GGTGGTGGGAGAGAGGTTGGTAGAAGGGGGGCATGTCAAGGTCAGGGAAG
AGGAGGAGAGGGAGGAGGCGGAGCAGGAGTCGATGCAGGGAGAGAAGGAG
TATGACGAGGAGGAGGAGATAAACAAGGAGAAGAAGACGGCGGATAAAGA
GAAAGGGGAGAAACAAATAACAAACAGGAAAGAAAAAGAAAGTTTTGAAC
ATACATGATTATACAGAGAAAAGCGCAAAGAAGTACCTTTCTTGCCTCGG
TCTGAGGAAGCACAGTCGCACGAACACGGGGCAAAAAGAAAAACGAAAAG
GAGGAGGCT

Coding sequence (CDS) from alignment at scaffold_8:842610..844318+

>mRNA_4102 ID=mRNA_4102|Name=jgi.p|Nanoce1779_2|554359|organism=Nannochloropsis oceanica|type=CDS|length=1608bp|location=Sequence derived from alignment at scaffold_8:842610..844318+ (Nannochloropsis oceanica)
ATGAGACAGTCATCATCATGGCCGTTGCCGCCTTCAACTGGCGTATTCGC
CACCCCAGCAGGACAGCACTCGCCCCAATCACGCTTGTCGTCCGTAAAAA
TACGGGGCATCAGCACGCGACAGTCACAGCACCTTTACCTCTCCTCATTC
TTGGGACTCCGGCCATCGGCCTCGTTACGAACGTTACGAAGAGCCGCCAC
GTCCCACCACTCCACTCATCGTCTTCAAACCATCCACCACTCAACCCAAG
GCCCGACATCTACTGCCCAGCCCAACTGTGTCGTTCTTCATATTACCCCC
CCTCGTTCCAACCACGAGGATCGAGCACAAGAGGGATACGCCCTTCAAGA
AGCCTGTGCCTTGGCTCAAACGCTGGGCTACGCTGTTCCAATGTACGAAA
CCCTACGTCTACGTGCCATCCATCCCAAGACGTACATTGGCAAAGGCAAG
GTGGTGGAGCTAAGAGGGATGTTGCGTGCAGTGGACGCAAATGCTTTGTT
TATCAACACAGCACGCCTCACGGCTTTGCAGCAGAAAAATATAAGCGAGC
TCTGTCAAGTAAATGAAGTAAAGGACCGTATCAGCGTTATACTTGAAATA
TTCTCAAAACGCGCGAGGACCACCGAGGCGAAAGTGCAGGTAGAGCTGGC
TCAATGCAAATATGCCCTCTCTCATCTCGTTCGAGGGGCCGCGGCCGCGT
ATGAGCAGCAGAGAGGCGCGTCGGGCACTGGATTTATGGCTGGTGGAGGC
GAGAAGGCTTTAGAGATTCAACGACGATTGTTGCGACAACAGGTGAAGTT
TCTGCAAGGTAAATTAAGGGTGGTCGAGAAGAGGAGGACAGAGCAGAGGA
AACATCGACAGCAACCAAGTGTGAGTTTGGTGGGGTATACAAACGTAGGC
AAATCGTCTTTACTTAACGCTCTGACCCGTTCGGAGTCCGTTACCGTTGA
AGACCGACCATTCGAAACCCTCGATACTACCACCCGCTCCCTCTTCCTTC
CCTCCCTCGACACCCCTACTCTGTTGATCGACACAGTCGGTTTTATTTCC
CAACTTCCTTTGGAGCTCGTCGCTTCTTTTCGCGCCACGTTGGAAGAAGT
GGTGGCTGCTGACCTCTTGCTCCACGTGCGTGATGCCAGCACGATAGGCA
CACCTCTTTTCGAAGCACAGCGACGATCGGTTGACAAGGTCTTGGGGGAG
ATAGGAACACATGAACATCTTAGTAAAAGTGTTATTGAGGTGTGGAATAA
AATTGACCTGCTCGAGACAGAAGAACAGAAGGAGATGCTTCGGATGGTGA
GGGAGGCAAGGGAGGGAGGGAGGGAGGAAGGGGGGCCGCCACCGAAGTGT
GTTGTGCTGGTGTCTGCGCGGATGAAGGAGGGTTTGAATGAGCTGATAAG
GGTGGTGGGAGAGAGGTTGGTAGAAGGGGGGCATGTCAAGGTCAGGGAAG
AGGAGGAGAGGGAGGAGGCGGAGCAGGAGTCGATGCAGGGAGAGAAGGAG
TATGACGAGGAGGAGGAGATAAACAAGGAGAAGAAGACGGCGGATAAAGA
GAAAGGGGAGAAACAAATAACAAACAGGAAAGAAAAAGAAAGTTTTGAAC
ATACATGA

Synonyms

Publications