jgi.p|Nanoce1779_2|585738, mRNA_3892 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|585738
Unique NamemRNA_3892
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1810
Alignment locationscaffold_8:319724..321549 -

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Properties
Property NameValue
TranscriptId585824
TrackFilteredModels2
ProteinId585738
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:319724..321549 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585738gene_3892Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585738mRNA_3892-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3892CDS_3892Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3892 ID=mRNA_3892|Name=jgi.p|Nanoce1779_2|585738|organism=Nannochloropsis oceanica|type=mRNA|length=1810bp
ACCGACACAACCCTCCTTTCCTCCATCTCCTCCTCCCGCACCCCCTCCCC
CATCCCCGCTCCCTCTCCCGCTCCCTCTCCCGCCTTCCCCTGCTGCTTTT
TCTGCAGGTACCGCAGCCTCCTCTACCGTCTTCTTGCCGTTCAACGCTTC
CGTCAAATTCTTCATCGACGCCTGGGTCCTCTTTTGGAGGTCGGCCAGCA
TTAGCCCCTTGATGGCCAGGTCCATCGAGGCGCGCACGTATCCGTTTGAA
GCGTGTGCAACGATGTGCTCGCGAGGAAGGAGGGGAGGCGAGGAAGGGAA
GGAAGGAGAGGAGGAAAAGACGGAAGGAGAGACAGGGACCTTCGGGGGGG
AGGGTGAGGAGGAGGGGACAGCAGCTGCGGTTGCAGTTGTGATTTTGTTG
AGGAGGGAAGCGGTGACGGTTCGAGAGGGATTTTCTTCCTCCTTGCCCAC
CACGACACTCATGCCGGGCAAAGACAAAAATTGCAACCCGATAAAGTTTC
CTTCCCTTTCCTCCTCCTCCTCCTTCTCCATATCCTTTTCAATCTCTCTC
TCTTCTGCTTCCTCTACATTAAAAGAGGAAGGAGGCGTGGGACGAGATAG
CACTACCAAGCCCTCCTCCCCCTTGACCTCCTCTATCGCTTCTTGCTTTT
CTTTTTTTGCCGCTGCTGCTGCAGCTGTGGCTGCTGCCTCTCCCGCCTGC
GCACCACTACCCATCCTTTGCTCACTTGGCAGGGATAGGGAGGGAGGGAG
AGCGTTTACCCTCTTCTCAAGCACTCCTTCCATCGAGGCCACACTGAATC
TCATGCTTACTTGCTCTGGTTCTTGGATATCGGAGAGGAGGTATGTGTAG
GGCTTGACCACCCCTTCCTCCATCCCTTCCTCGTCCTTCTTCTCGGGAGG
CTTAGTCATGCTGACGCTGAGGAGGATTAGGGAGGCGCTGAAGGCGGAGG
TTTGAAGGAGGAGGGGATAGGGAGTAAGGGATGCAGGAGAGGAGGTTGGT
GGTGATGAGGAAGGAAAAGGAGGAGAAGAGGGAAAAGACTGCCGTAAAGG
TTTGTCTTTGTCATCCTTCCCCTTCATGTCAAAGTCATTGAATGCCTGTA
CAGACTCCTCCAGCTCGTCGTCGTCCTCCTCCTCCTCCTCCTCCTCTTCA
TTCGCCTTCTCCTTTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTT
CTCTATCACAGGCTCCGCGAGAGAGGACAGTGTAAGATCTTTAAAAGTCA
TTTCATATTTTGCTTCCGGATTAATCACCTTCTCCCTATTCACCCCTGAA
GCTGACAAGGCTCTCTTCCTTTCGGCTACCTCATCCTCCCTTCCTTCTTC
CCCTTCATCTTCCCAGTCCTCGAGTCGATCGCCAACGAAAAGGAGGGATG
CAAGGTGGAGATGTGCGTGGTGAGGGATGACCAAGGAAGAGGGGGAGGAG
GGGGAGAAGGAGGAGGAGGAAGAGGGTGGGGCTGCAGCCATTACCGTTGA
TGGTGGTAGTGGTGGAAAGGAGGAGGAGGAAGAGGGAGGGAGGGGAGAGG
TAACCGACGAGTACATGCCCTTCATCCATCGGAGGAAAGCACCGGAAGTG
TAAACTTTAACGAAGTCGATCTCAGAGTGGACATCGGCTCGTAACAGCTG
ACCTTGATACGGCCAGAGCGAGGAGGAAGGGAGGGAGAACACGGTGGGTG
CCTGGAGGCCACCAGCACCCGCTGCTGCTGCTGCTGCTGCTGCTGCTACT
GTAGGTGGTGGCAATGGCCGGTTCCGCGGACTGATAAGACGAGAAATTCC
AAGATTCTCC
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protein sequence of jgi.p|Nanoce1779_2|585738

>mRNA_3892-protein ID=mRNA_3892-protein|Name=jgi.p|Nanoce1779_2|585738|organism=Nannochloropsis oceanica|type=polypeptide|length=213bp
MARSIEARTYPFEACATMCSRGRRGGEEGKEGEEEKTEGETGTFGGEGEE
EGTAAAVAVVILLRREAVTVREGFSSSLPTTTLMPGKDKNCNPIKFPSLS
SSSSFSISFSISLSSASSTLKEEGGVGRDSTTKPSSPLTSSIASCFSFFA
AAAAAVAAASPACAPLPILCSLGRDREGGRAFTLFSSTPSIEATLNLMLT
CSGSWISERRYV*
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mRNA from alignment at scaffold_8:319724..321549-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3892 ID=mRNA_3892|Name=jgi.p|Nanoce1779_2|585738|organism=Nannochloropsis oceanica|type=mRNA|length=1826bp|location=Sequence derived from alignment at scaffold_8:319724..321549- (Nannochloropsis oceanica)
ACCGACACAACCCTCCTTTCCTCCATCTCCTCCTCCCGCACCCCCTCCCC
CATCCCCGCTCCCTCTCCCGCTCCCTCTCCCGCCTTCCCCTGCTGCTTTT
TCTGCAGGTACCGCAGCCTCCTCTACCGTCTTCTTGCCGTTCAACGCTTC
CGTCAAATTCTTCATCGACGCCTGGGTCCTCTTTTGGAGGTCGGCCAGCA
TTAGCCCCTTGATGGCCAGGTCCATCGAGGCGCGCACGTATCCGTTTGAA
GCGTGTGCAACGATGTGCTCGCGAGGAAGGAGGGGAGGCGAGGAAGGGAA
GGAAGGAGAGGAGGAAAAGACGGAAGGAGAGACAGGGACCTTCGGGGGGG
AGGGTGAGGAGGAGGGGACAGCAGCTGCGGTTGCAGTTGTGATTTTGTTG
AGGAGGGAAGCGGTGACGGTTCGAGAGGGATTTTCTTCCTCCTTGCCCAC
CACGACACTCATGCCGGGCAAAGACAAAAATTGCAACCCGATAAAGTTTC
CTTCCCTTTCCTCCTCCTCCTCCTTCTCCATATCCTTTTCAATCTCTCTC
TCTTCTGCTTCCTCTACATTAAAAGAGGAAGGAGGCGTGGGACGAGATAG
CACTACCAAGCCCTCCTCCCCCTTGACCTCCTCTATCGTGATTCTTACGA
CAGGCTTCTTGCTTTTCTTTTTTTGCCGCTGCTGCTGCAGCTGTGGCTGC
TGCCTCTCCCGCCTGCGCACCACTACCCATCCTTTGCTCACTTGGCAGGG
ATAGGGAGGGAGGGAGAGCGTTTACCCTCTTCTCAAGCACTCCTTCCATC
GAGGCCACACTGAATCTCATGCTTACTTGCTCTGGTTCTTGGATATCGGA
GAGGAGGTATGTGTAGGGCTTGACCACCCCTTCCTCCATCCCTTCCTCGT
CCTTCTTCTCGGGAGGCTTAGTCATGCTGACGCTGAGGAGGATTAGGGAG
GCGCTGAAGGCGGAGGTTTGAAGGAGGAGGGGATAGGGAGTAAGGGATGC
AGGAGAGGAGGTTGGTGGTGATGAGGAAGGAAAAGGAGGAGAAGAGGGAA
AAGACTGCCGTAAAGGTTTGTCTTTGTCATCCTTCCCCTTCATGTCAAAG
TCATTGAATGCCTGTACAGACTCCTCCAGCTCGTCGTCGTCCTCCTCCTC
CTCCTCCTCCTCTTCATTCGCCTTCTCCTTTTCCTCCTCCTCCTCCTCCT
CCTCCTCCTCCTCCTTCTCTATCACAGGCTCCGCGAGAGAGGACAGTGTA
AGATCTTTAAAAGTCATTTCATATTTTGCTTCCGGATTAATCACCTTCTC
CCTATTCACCCCTGAAGCTGACAAGGCTCTCTTCCTTTCGGCTACCTCAT
CCTCCCTTCCTTCTTCCCCTTCATCTTCCCAGTCCTCGAGTCGATCGCCA
ACGAAAAGGAGGGATGCAAGGTGGAGATGTGCGTGGTGAGGGATGACCAA
GGAAGAGGGGGAGGAGGGGGAGAAGGAGGAGGAGGAAGAGGGTGGGGCTG
CAGCCATTACCGTTGATGGTGGTAGTGGTGGAAAGGAGGAGGAGGAAGAG
GGAGGGAGGGGAGAGGTAACCGACGAGTACATGCCCTTCATCCATCGGAG
GAAAGCACCGGAAGTGTAAACTTTAACGAAGTCGATCTCAGAGTGGACAT
CGGCTCGTAACAGCTGACCTTGATACGGCCAGAGCGAGGAGGAAGGGAGG
GAGAACACGGTGGGTGCCTGGAGGCCACCAGCACCCGCTGCTGCTGCTGC
TGCTGCTGCTGCTACTGTAGGTGGTGGCAATGGCCGGTTCCGCGGACTGA
TAAGACGAGAAATTCCAAGATTCTCC
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Coding sequence (CDS) from alignment at scaffold_8:319724..321549-

>mRNA_3892 ID=mRNA_3892|Name=jgi.p|Nanoce1779_2|585738|organism=Nannochloropsis oceanica|type=CDS|length=1278bp|location=Sequence derived from alignment at scaffold_8:319724..321549- (Nannochloropsis oceanica)
GCTTCTTGCTTTTCTTTTTTTGCCGCTGCTGCTGCAGCTGTGGCTGCTGC
CTCTCCCGCCTGCGCACCACTACCCATCCTTTGCTCACTTGGCAGGGATA
GGGAGGGAGGGAGAGCGTTTACCCTCTTCTCAAGCACTCCTTCCATCGAG
GCCACACTGAATCTCATGCTTACTTGCTCTGGTTCTTGGATATCGGAGAG
GAGGTATGTGTAGATGGCCAGGTCCATCGAGGCGCGCACGTATCCGTTTG
AAGCGTGTGCAACGATGTGCTCGCGAGGAAGGAGGGGAGGCGAGGAAGGG
AAGGAAGGAGAGGAGGAAAAGACGGAAGGAGAGACAGGGACCTTCGGGGG
GGAGGGTGAGGAGGAGGGGACAGCAGCTGCGGTTGCAGTTGTGATTTTGT
TGAGGAGGGAAGCGGTGACGGTTCGAGAGGGATTTTCTTCCTCCTTGCCC
ACCACGACACTCATGCCGGGCAAAGACAAAAATTGCAACCCGATAAAGTT
TCCTTCCCTTTCCTCCTCCTCCTCCTTCTCCATATCCTTTTCAATCTCTC
TCTCTTCTGCTTCCTCTACATTAAAAGAGGAAGGAGGCGTGGGACGAGAT
AGCACTACCAAGCCCTCCTCCCCCTTGACCTCCTCTATCGCTTCTTGCTT
TTCTTTTTTTGCCGCTGCTGCTGCAGCTGTGGCTGCTGCCTCTCCCGCCT
GCGCACCACTACCCATCCTTTGCTCACTTGGCAGGGATAGGGAGGGAGGG
AGAGCGTTTACCCTCTTCTCAAGCACTCCTTCCATCGAGGCCACACTGAA
TCTCATGCTTACTTGCTCTGGTTCTTGGATATCGGAGAGGAGGTATGTGT
AGATGGCCAGGTCCATCGAGGCGCGCACGTATCCGTTTGAAGCGTGTGCA
ACGATGTGCTCGCGAGGAAGGAGGGGAGGCGAGGAAGGGAAGGAAGGAGA
GGAGGAAAAGACGGAAGGAGAGACAGGGACCTTCGGGGGGGAGGGTGAGG
AGGAGGGGACAGCAGCTGCGGTTGCAGTTGTGATTTTGTTGAGGAGGGAA
GCGGTGACGGTTCGAGAGGGATTTTCTTCCTCCTTGCCCACCACGACACT
CATGCCGGGCAAAGACAAAAATTGCAACCCGATAAAGTTTCCTTCCCTTT
CCTCCTCCTCCTCCTTCTCCATATCCTTTTCAATCTCTCTCTCTTCTGCT
TCCTCTACATTAAAAGAGGAAGGAGGCGTGGGACGAGATAGCACTACCAA
GCCCTCCTCCCCCTTGACCTCCTCTATC
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Synonyms
Publications