jgi.p|Nanoce1779_2|586583, mRNA_4114 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|586583
Unique Name	mRNA_4114
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	936
Alignment location	scaffold_8:870454..871389 +

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Properties


Property Name	Value
TranscriptId	586669
Track	FilteredModels2
ProteinId	586583

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:870454..871389 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|586583	gene_4114	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|586583	mRNA_4114-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4114	CDS_4114	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:870454..871389+
coding sequence from alignment at scaffold_8:870454..871389+

mRNA sequence

>mRNA_4114 ID=mRNA_4114|Name=jgi.p|Nanoce1779_2|586583|organism=Nannochloropsis oceanica|type=mRNA|length=936bp
CCTTCCCCCAGCACCGCTCCCCGGCAAGCCTCCTCCTCCCCCTCCCTCCC
CTCCTCCTTCCCCTCCTCCTGCCCCGGGTCCCAACAACCCGGCCAACAAG
TGAGGAGGAATAGGATTCGGCGGGTGCATAAACATGTGAGGATGCGGTGG
CCCTTCCCCCATTTCAAAACTTCCTCCTCTTCCCTCTCTTCCTTCTCCAG
ATGGCGACATCCCCATCATGCCATGGCCTGTATGCAAGTGAGAAGGGACA
TTCAACATCATATGTGACTGCGGTGGCTGCAGCTTTTGCTGCCCCTGCGG
TAGGTAAGCGAAAGGGGAAGGTTGCTGCTGCTGCGATATCGATGAGGCGC
CTTGTTGTTCTTCCTGCGGGAGAAAAGGGGGCAGCTGATAGTTGCCAAGC
ATCATATTTCCCAACAGGTTTGGTGGTGGTAGCGATGGAGCTTGCCCTCC
TTCAACCACTCCTCGCCCTCCTGGCCCTTGTTGCCCCGAAGCTTCTGCTG
CCATTGCAGAGAAGAGATCAAAGCCTGGCAGATTACCTTCACCATTCCCC
AAAAGTCCCATCGAGTGGGGCGGCTGCTGGGGCTGTTGCTGTTGGTGTTG
CAGCTGCTGCTGCTGCTGCTGCTCTTCCCCTCCATCTCCTCCTCCACCTC
CGCGTAAAGCCTCAAGGACCGAGATAGAAGAGCGTGGTGGCTGCTGTAGC
TGATGCTGCTGTACCGCAAAATCCTCGCCGCCATTCTGCTGCTGCTGCTG
TTGCTGCTGTTGTTGTTGTTGCGGGGGGGGGGGCCGTTCCAGCTTCTCCA
CCCCCTCCGTCGAGGAGCGCTCGAGCCGTGGCCAGGAATGTCTGTTGATC
ATTGTCCCGTTGATATCTATTTTGAGCCTCTACTGCCACGGGGTGTCCTT
CTCGCACGAGCTTCATGAAAGCGATGAGTACGTCCT

protein sequence of jgi.p|Nanoce1779_2|586583

>mRNA_4114-protein ID=mRNA_4114-protein|Name=jgi.p|Nanoce1779_2|586583|organism=Nannochloropsis oceanica|type=polypeptide|length=159bp
MATSPSCHGLYASEKGHSTSYVTAVAAAFAAPAVGKRKGKVAAAAISMRR
LVVLPAGEKGAADSCQASYFPTGLVVVAMELALLQPLLALLALVAPKLLL
PLQRRDQSLADYLHHSPKVPSSGAAAGAVAVGVAAAAAAAALPLHLLLHL
RVKPQGPR*

mRNA from alignment at scaffold_8:870454..871389+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4114 ID=mRNA_4114|Name=jgi.p|Nanoce1779_2|586583|organism=Nannochloropsis oceanica|type=mRNA|length=936bp|location=Sequence derived from alignment at scaffold_8:870454..871389+ (Nannochloropsis oceanica)
CCTTCCCCCAGCACCGCTCCCCGGCAAGCCTCCTCCTCCCCCTCCCTCCC
CTCCTCCTTCCCCTCCTCCTGCCCCGGGTCCCAACAACCCGGCCAACAAG
TGAGGAGGAATAGGATTCGGCGGGTGCATAAACATGTGAGGATGCGGTGG
CCCTTCCCCCATTTCAAAACTTCCTCCTCTTCCCTCTCTTCCTTCTCCAG
ATGGCGACATCCCCATCATGCCATGGCCTGTATGCAAGTGAGAAGGGACA
TTCAACATCATATGTGACTGCGGTGGCTGCAGCTTTTGCTGCCCCTGCGG
TAGGTAAGCGAAAGGGGAAGGTTGCTGCTGCTGCGATATCGATGAGGCGC
CTTGTTGTTCTTCCTGCGGGAGAAAAGGGGGCAGCTGATAGTTGCCAAGC
ATCATATTTCCCAACAGGTTTGGTGGTGGTAGCGATGGAGCTTGCCCTCC
TTCAACCACTCCTCGCCCTCCTGGCCCTTGTTGCCCCGAAGCTTCTGCTG
CCATTGCAGAGAAGAGATCAAAGCCTGGCAGATTACCTTCACCATTCCCC
AAAAGTCCCATCGAGTGGGGCGGCTGCTGGGGCTGTTGCTGTTGGTGTTG
CAGCTGCTGCTGCTGCTGCTGCTCTTCCCCTCCATCTCCTCCTCCACCTC
CGCGTAAAGCCTCAAGGACCGAGATAGAAGAGCGTGGTGGCTGCTGTAGC
TGATGCTGCTGTACCGCAAAATCCTCGCCGCCATTCTGCTGCTGCTGCTG
TTGCTGCTGTTGTTGTTGTTGCGGGGGGGGGGGCCGTTCCAGCTTCTCCA
CCCCCTCCGTCGAGGAGCGCTCGAGCCGTGGCCAGGAATGTCTGTTGATC
ATTGTCCCGTTGATATCTATTTTGAGCCTCTACTGCCACGGGGTGTCCTT
CTCGCACGAGCTTCATGAAAGCGATGAGTACGTCCT

Coding sequence (CDS) from alignment at scaffold_8:870454..871389+

>mRNA_4114 ID=mRNA_4114|Name=jgi.p|Nanoce1779_2|586583|organism=Nannochloropsis oceanica|type=CDS|length=477bp|location=Sequence derived from alignment at scaffold_8:870454..871389+ (Nannochloropsis oceanica)
ATGGCGACATCCCCATCATGCCATGGCCTGTATGCAAGTGAGAAGGGACA
TTCAACATCATATGTGACTGCGGTGGCTGCAGCTTTTGCTGCCCCTGCGG
TAGGTAAGCGAAAGGGGAAGGTTGCTGCTGCTGCGATATCGATGAGGCGC
CTTGTTGTTCTTCCTGCGGGAGAAAAGGGGGCAGCTGATAGTTGCCAAGC
ATCATATTTCCCAACAGGTTTGGTGGTGGTAGCGATGGAGCTTGCCCTCC
TTCAACCACTCCTCGCCCTCCTGGCCCTTGTTGCCCCGAAGCTTCTGCTG
CCATTGCAGAGAAGAGATCAAAGCCTGGCAGATTACCTTCACCATTCCCC
AAAAGTCCCATCGAGTGGGGCGGCTGCTGGGGCTGTTGCTGTTGGTGTTG
CAGCTGCTGCTGCTGCTGCTGCTCTTCCCCTCCATCTCCTCCTCCACCTC
CGCGTAAAGCCTCAAGGACCGAGATAG

Synonyms

Publications