jgi.p|Nanoce1779_2|670318, mRNA_4140 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|670318
Unique Name	mRNA_4140
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2089
Alignment location	scaffold_8:922665..924753 -

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Properties


Property Name	Value
TranscriptId	670404
Track	FilteredModels2
ProteinId	670318

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:922665..924753 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|670318	gene_4140	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4140	CDS_4140	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|670318	mRNA_4140-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:922665..924753-
coding sequence from alignment at scaffold_8:922665..924753-

mRNA sequence

>mRNA_4140 ID=mRNA_4140|Name=jgi.p|Nanoce1779_2|670318|organism=Nannochloropsis oceanica|type=mRNA|length=2089bp
CAGTCATCACGCAGCGTCTGCATTCTACGCCCCCTCCCGCTCCTGCAGCC
CTCCAACAAGTCGCACCAGCAGCATGGAGCAGATCCTCCGCTGCCCTAAC
CCGGACTGCCGAGGCATTGACCTTGAGTACAGCGAACCCGACGGAGCTAC
TATCTGCATGGCCTGCCACACCATCGTAGAAGAAAATGCCATAGTCTCCT
CTGTGGAATTCAATGAGAACAGCGCGGGAGGTGCCTCCACAGTGGTCGGA
CAGTTCGTCGGACCTGAAATGACTAAGGCCTACAGCTCGGCCGGACGGGG
TCGTCGTCGCTTTTATGCACGGGATTCCCGCGACACCACCTTAAACAATG
GCCGCCGTGCCATCCAGCAGGTCGTCTCGCAGCTTAGACTCCGTCAAGCA
TTCGTTGACCGTGCCTGTCGCTTGTTCCGCACGGCAGTGGAACGGAATTT
CGTTCAAGGTCGCAAAACGCTGTGTGTGGTGGCGGTATGCTTGTATATGG
TTTGCCGCGAAGACAACTCTCCACATATGCTCATCGACTTTTCTGACGCC
GTTCAAATCAATGTCTACGTCCTCGGGCATGCCTTCCTTAAATTCAAGCA
GCTCACCGGCCTTAACCTGGCCGTCATCGACCCTTCCATCTACATCCATC
GATTCGCCGCCCGCCTCGAACTCGGCTCCGAACAAGAACAAACCACAGTG
TCCCAGCTTGCGCTGCGCCTAGTGGCATCCATGCAACGTGATTGGATCCA
AGCCGGTCGTCGTCCCTCCGGTATCTGTGGCGCGGCCCTCTACCTCTCGG
CGATATACCACGAGAAGCCACGGACCTACAAGGACGTGGGAAGAATAGTC
CGAGTCTCGCCCGACACAATCAAAAAACGAGTGGATGAATTTGAAAAAAC
ACCAATATCAGGGATGATGAGTAGAGACGAGCTTGCAAATATGGCGCTGT
CAGAGTTTGATATCTCGCCGCGGATGGGAGGGGGGGAGGGAGGGAGGGAG
GGAGCACCTCGCTTGGTGGGGGAGGCGGACCCGCCTTCGTTCACAAGGGC
TGTGAAGATGAAGGCAGCGGAGGCGTTAAGAAAGGCACAAGCGCTGAGGG
ATGAAGGAAAAGACGCAAAGGGGAGGGGAGAGAGTGGGAAAGAAGAGGAA
GAGGTGACGTCGGTGAATGGGCGGGAATCGTCCACGTCCTCGTCCTCGTC
TGCTGCTGCGACTGCGAACAGTAGCAGGGAGAGAGGTGGTAGCATGGCTG
GGGCTCGGAGCAGGAAGAGATCAAGAAGAGGGGGAGAGGGTGAGGGGGAA
GAGGAGGAAAGGGGAAAGGAGGACGTGGGGCCGTTAATTCGGGAGGAGAG
TGAGGGAGGGACGGAGGAAGTGGGGTTATACAAGGAGTTGATGGACCAGC
TTTTGGATGAAGAGGAGGAGCAAGCAAATAATAGGGCTGTGGCAGCAGAT
ACAGAACGAGCAGCAGCTCAGGTGGGGATCAATGGAAGAATAAATAGAGG
AGGAGCAGCAGGAGGAGGAGCAGTAGTGACGATTGCAGCACCTGTGGTGC
TTGGGGCAGCAGCAGTCGAGGAAATAGAGGAGAAAGAGGATGAGGAGGTG
GCGGCAGTGGTGGTGGCGGAGGAGGAGAAGGAAGAAGAAGAGGAGGTTGA
TGACACGGCGCAGTATATCCGCTCGGAGGAGGAGGTGGAAAAATTGAGCA
AAGTCTGGCATGAAGTCCACAGAGGCTACCTGGAAAAGCAAGCGAGGAAG
AAAGCCGAAGAAGAAGCAGCCAAGAAGCGTGCAGAGGAAGATTTCAATTA
CCGTCAACCGGGCCAAAGCAACCACCAGAAGAAGAAGGCGGCTGCAGCAG
TGGCTGCTGCGGCGGCGGCCGCCTCGGTAGTGGGGGCCGGGGGGAGTCGA
GCAGCGGGAGGAATGGGGGGAGGAGGGCCAGCGCGGTCGCCTGCCGAGAT
TGCTGTATCAAACCATTTGGCCAAGAAGCGAATTTCAAAGAAGATTAATT
ATGAGGCGGTCAAGATGTTGGGGAATGATGATGATATGGATGCATTGCCG
CCTGAATTGGAGGCGATTTTGACACAAGGGAGGGATTAG

protein sequence of jgi.p|Nanoce1779_2|670318

>mRNA_4140-protein ID=mRNA_4140-protein|Name=jgi.p|Nanoce1779_2|670318|organism=Nannochloropsis oceanica|type=polypeptide|length=672bp
MEQILRCPNPDCRGIDLEYSEPDGATICMACHTIVEENAIVSSVEFNENS
AGGASTVVGQFVGPEMTKAYSSAGRGRRRFYARDSRDTTLNNGRRAIQQV
VSQLRLRQAFVDRACRLFRTAVERNFVQGRKTLCVVAVCLYMVCREDNSP
HMLIDFSDAVQINVYVLGHAFLKFKQLTGLNLAVIDPSIYIHRFAARLEL
GSEQEQTTVSQLALRLVASMQRDWIQAGRRPSGICGAALYLSAIYHEKPR
TYKDVGRIVRVSPDTIKKRVDEFEKTPISGMMSRDELANMALSEFDISPR
MGGGEGGREGAPRLVGEADPPSFTRAVKMKAAEALRKAQALRDEGKDAKG
RGESGKEEEEVTSVNGRESSTSSSSSAAATANSSRERGGSMAGARSRKRS
RRGGEGEGEEEERGKEDVGPLIREESEGGTEEVGLYKELMDQLLDEEEEQ
ANNRAVAADTERAAAQVGINGRINRGGAAGGGAVVTIAAPVVLGAAAVEE
IEEKEDEEVAAVVVAEEEKEEEEEVDDTAQYIRSEEEVEKLSKVWHEVHR
GYLEKQARKKAEEEAAKKRAEEDFNYRQPGQSNHQKKKAAAAVAAAAAAA
SVVGAGGSRAAGGMGGGGPARSPAEIAVSNHLAKKRISKKINYEAVKMLG
NDDDMDALPPELEAILTQGRD*

mRNA from alignment at scaffold_8:922665..924753-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4140 ID=mRNA_4140|Name=jgi.p|Nanoce1779_2|670318|organism=Nannochloropsis oceanica|type=mRNA|length=2089bp|location=Sequence derived from alignment at scaffold_8:922665..924753- (Nannochloropsis oceanica)
CAGTCATCACGCAGCGTCTGCATTCTACGCCCCCTCCCGCTCCTGCAGCC
CTCCAACAAGTCGCACCAGCAGCATGGAGCAGATCCTCCGCTGCCCTAAC
CCGGACTGCCGAGGCATTGACCTTGAGTACAGCGAACCCGACGGAGCTAC
TATCTGCATGGCCTGCCACACCATCGTAGAAGAAAATGCCATAGTCTCCT
CTGTGGAATTCAATGAGAACAGCGCGGGAGGTGCCTCCACAGTGGTCGGA
CAGTTCGTCGGACCTGAAATGACTAAGGCCTACAGCTCGGCCGGACGGGG
TCGTCGTCGCTTTTATGCACGGGATTCCCGCGACACCACCTTAAACAATG
GCCGCCGTGCCATCCAGCAGGTCGTCTCGCAGCTTAGACTCCGTCAAGCA
TTCGTTGACCGTGCCTGTCGCTTGTTCCGCACGGCAGTGGAACGGAATTT
CGTTCAAGGTCGCAAAACGCTGTGTGTGGTGGCGGTATGCTTGTATATGG
TTTGCCGCGAAGACAACTCTCCACATATGCTCATCGACTTTTCTGACGCC
GTTCAAATCAATGTCTACGTCCTCGGGCATGCCTTCCTTAAATTCAAGCA
GCTCACCGGCCTTAACCTGGCCGTCATCGACCCTTCCATCTACATCCATC
GATTCGCCGCCCGCCTCGAACTCGGCTCCGAACAAGAACAAACCACAGTG
TCCCAGCTTGCGCTGCGCCTAGTGGCATCCATGCAACGTGATTGGATCCA
AGCCGGTCGTCGTCCCTCCGGTATCTGTGGCGCGGCCCTCTACCTCTCGG
CGATATACCACGAGAAGCCACGGACCTACAAGGACGTGGGAAGAATAGTC
CGAGTCTCGCCCGACACAATCAAAAAACGAGTGGATGAATTTGAAAAAAC
ACCAATATCAGGGATGATGAGTAGAGACGAGCTTGCAAATATGGCGCTGT
CAGAGTTTGATATCTCGCCGCGGATGGGAGGGGGGGAGGGAGGGAGGGAG
GGAGCACCTCGCTTGGTGGGGGAGGCGGACCCGCCTTCGTTCACAAGGGC
TGTGAAGATGAAGGCAGCGGAGGCGTTAAGAAAGGCACAAGCGCTGAGGG
ATGAAGGAAAAGACGCAAAGGGGAGGGGAGAGAGTGGGAAAGAAGAGGAA
GAGGTGACGTCGGTGAATGGGCGGGAATCGTCCACGTCCTCGTCCTCGTC
TGCTGCTGCGACTGCGAACAGTAGCAGGGAGAGAGGTGGTAGCATGGCTG
GGGCTCGGAGCAGGAAGAGATCAAGAAGAGGGGGAGAGGGTGAGGGGGAA
GAGGAGGAAAGGGGAAAGGAGGACGTGGGGCCGTTAATTCGGGAGGAGAG
TGAGGGAGGGACGGAGGAAGTGGGGTTATACAAGGAGTTGATGGACCAGC
TTTTGGATGAAGAGGAGGAGCAAGCAAATAATAGGGCTGTGGCAGCAGAT
ACAGAACGAGCAGCAGCTCAGGTGGGGATCAATGGAAGAATAAATAGAGG
AGGAGCAGCAGGAGGAGGAGCAGTAGTGACGATTGCAGCACCTGTGGTGC
TTGGGGCAGCAGCAGTCGAGGAAATAGAGGAGAAAGAGGATGAGGAGGTG
GCGGCAGTGGTGGTGGCGGAGGAGGAGAAGGAAGAAGAAGAGGAGGTTGA
TGACACGGCGCAGTATATCCGCTCGGAGGAGGAGGTGGAAAAATTGAGCA
AAGTCTGGCATGAAGTCCACAGAGGCTACCTGGAAAAGCAAGCGAGGAAG
AAAGCCGAAGAAGAAGCAGCCAAGAAGCGTGCAGAGGAAGATTTCAATTA
CCGTCAACCGGGCCAAAGCAACCACCAGAAGAAGAAGGCGGCTGCAGCAG
TGGCTGCTGCGGCGGCGGCCGCCTCGGTAGTGGGGGCCGGGGGGAGTCGA
GCAGCGGGAGGAATGGGGGGAGGAGGGCCAGCGCGGTCGCCTGCCGAGAT
TGCTGTATCAAACCATTTGGCCAAGAAGCGAATTTCAAAGAAGATTAATT
ATGAGGCGGTCAAGATGTTGGGGAATGATGATGATATGGATGCATTGCCG
CCTGAATTGGAGGCGATTTTGACACAAGGGAGGGATTAG

Coding sequence (CDS) from alignment at scaffold_8:922665..924753-

>mRNA_4140 ID=mRNA_4140|Name=jgi.p|Nanoce1779_2|670318|organism=Nannochloropsis oceanica|type=CDS|length=2016bp|location=Sequence derived from alignment at scaffold_8:922665..924753- (Nannochloropsis oceanica)
ATGGAGCAGATCCTCCGCTGCCCTAACCCGGACTGCCGAGGCATTGACCT
TGAGTACAGCGAACCCGACGGAGCTACTATCTGCATGGCCTGCCACACCA
TCGTAGAAGAAAATGCCATAGTCTCCTCTGTGGAATTCAATGAGAACAGC
GCGGGAGGTGCCTCCACAGTGGTCGGACAGTTCGTCGGACCTGAAATGAC
TAAGGCCTACAGCTCGGCCGGACGGGGTCGTCGTCGCTTTTATGCACGGG
ATTCCCGCGACACCACCTTAAACAATGGCCGCCGTGCCATCCAGCAGGTC
GTCTCGCAGCTTAGACTCCGTCAAGCATTCGTTGACCGTGCCTGTCGCTT
GTTCCGCACGGCAGTGGAACGGAATTTCGTTCAAGGTCGCAAAACGCTGT
GTGTGGTGGCGGTATGCTTGTATATGGTTTGCCGCGAAGACAACTCTCCA
CATATGCTCATCGACTTTTCTGACGCCGTTCAAATCAATGTCTACGTCCT
CGGGCATGCCTTCCTTAAATTCAAGCAGCTCACCGGCCTTAACCTGGCCG
TCATCGACCCTTCCATCTACATCCATCGATTCGCCGCCCGCCTCGAACTC
GGCTCCGAACAAGAACAAACCACAGTGTCCCAGCTTGCGCTGCGCCTAGT
GGCATCCATGCAACGTGATTGGATCCAAGCCGGTCGTCGTCCCTCCGGTA
TCTGTGGCGCGGCCCTCTACCTCTCGGCGATATACCACGAGAAGCCACGG
ACCTACAAGGACGTGGGAAGAATAGTCCGAGTCTCGCCCGACACAATCAA
AAAACGAGTGGATGAATTTGAAAAAACACCAATATCAGGGATGATGAGTA
GAGACGAGCTTGCAAATATGGCGCTGTCAGAGTTTGATATCTCGCCGCGG
ATGGGAGGGGGGGAGGGAGGGAGGGAGGGAGCACCTCGCTTGGTGGGGGA
GGCGGACCCGCCTTCGTTCACAAGGGCTGTGAAGATGAAGGCAGCGGAGG
CGTTAAGAAAGGCACAAGCGCTGAGGGATGAAGGAAAAGACGCAAAGGGG
AGGGGAGAGAGTGGGAAAGAAGAGGAAGAGGTGACGTCGGTGAATGGGCG
GGAATCGTCCACGTCCTCGTCCTCGTCTGCTGCTGCGACTGCGAACAGTA
GCAGGGAGAGAGGTGGTAGCATGGCTGGGGCTCGGAGCAGGAAGAGATCA
AGAAGAGGGGGAGAGGGTGAGGGGGAAGAGGAGGAAAGGGGAAAGGAGGA
CGTGGGGCCGTTAATTCGGGAGGAGAGTGAGGGAGGGACGGAGGAAGTGG
GGTTATACAAGGAGTTGATGGACCAGCTTTTGGATGAAGAGGAGGAGCAA
GCAAATAATAGGGCTGTGGCAGCAGATACAGAACGAGCAGCAGCTCAGGT
GGGGATCAATGGAAGAATAAATAGAGGAGGAGCAGCAGGAGGAGGAGCAG
TAGTGACGATTGCAGCACCTGTGGTGCTTGGGGCAGCAGCAGTCGAGGAA
ATAGAGGAGAAAGAGGATGAGGAGGTGGCGGCAGTGGTGGTGGCGGAGGA
GGAGAAGGAAGAAGAAGAGGAGGTTGATGACACGGCGCAGTATATCCGCT
CGGAGGAGGAGGTGGAAAAATTGAGCAAAGTCTGGCATGAAGTCCACAGA
GGCTACCTGGAAAAGCAAGCGAGGAAGAAAGCCGAAGAAGAAGCAGCCAA
GAAGCGTGCAGAGGAAGATTTCAATTACCGTCAACCGGGCCAAAGCAACC
ACCAGAAGAAGAAGGCGGCTGCAGCAGTGGCTGCTGCGGCGGCGGCCGCC
TCGGTAGTGGGGGCCGGGGGGAGTCGAGCAGCGGGAGGAATGGGGGGAGG
AGGGCCAGCGCGGTCGCCTGCCGAGATTGCTGTATCAAACCATTTGGCCA
AGAAGCGAATTTCAAAGAAGATTAATTATGAGGCGGTCAAGATGTTGGGG
AATGATGATGATATGGATGCATTGCCGCCTGAATTGGAGGCGATTTTGAC
ACAAGGGAGGGATTAG

Synonyms

Publications