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Properties
| Property Name | Value |
|---|
| TranscriptId | 638981 |
| Track | FilteredModels2 |
| ProteinId | 638895 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_9 | supercontig | scaffold_9:615296..617354 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_4781 ID=mRNA_4781|Name=jgi.p|Nanoce1779_2|638895|organism=Nannochloropsis oceanica|type=mRNA|length=1926bp
ATGTCTAGGAGGAGCAGCAAGCAAAAGCGGGTCGAAAACAGCAGCGACGA
CGAGGACGATGGCCCGGCCCCTCCTCCGCCTCCCCCTCCCCCCGCCCACA
CGAGCGACGACGAAGACAGCGATGACGACTTTGGCCCCGTGCCCGTGGCT
GCTGGCAGTGCCGCTGCAGCTGGTCATGAAGAGAACGAGGACGAGGACGA
GGTTGGCCCTACACTGAAGGCCAAGAAGAAGAAGAAGAAGCGGAAGCTCG
ACCACGAGGAGGCTTTTGTTGCCGCGTTGCCCAATGCGGACATGTACGAA
AAGAGTTACATGCATCGAGATATCGTCACGTTTTGTGCCTTTACCCCACG
GACGGACTTTTTGGTGACGGCGTCGGAGGACGGACATGTCAAATTCTGGA
AAAAGATGCCTGATGGCCTCGAATTTGTCAAGCATTACCACGCTCATCTG
GGGGGTGTTCGCGGGTTGGCCGTGAGTGCGGATGGACTGCGGCTTGCGAC
GACGGGGGTGGATAAAGCTGTAAAATTTTATGATGTCCTGACGTTTGATT
TGACGTATATGATGGATGTAGAGTATGCGCCGACGCATGCGGCGTGGTGT
CATCGCCCGGGGGAGGCACATGGGAGGCTGGTAGTTGCTGATGATGACAG
CCCTTGCGTGAGAATCTATCGATCTGATGGGAGTCAAGAGCCTATTCATG
TCTTGCCATCCTTGCATGCTGCGCCGGTGACGGCGTTGGCGTTTTCATGC
GCGGATGCATTGATGGTGTCGGGGGATGGGAAAGGCATGCTGGAGTACTG
GTCTACCGACTTGGAGGGGGAGGGGAAGGAGGCTTGCTATGGCTTCCCGC
GGGCAAAAGTGGGGTTTAAGAGTAAGTTGGACTCTGATTTGTTTGAATTG
ATGAAGAAAAAGACTTATGCGACGAGTTTGGATGTCTCGAAGGATGGGGG
AAAACTGGCGGTGGTGGGGAAGGATCGTCAAATCCGGGTATTCGACTTGA
GGAAGGGAAAGTTAATGAGGGTGTATAATGAGGGAATGGAGGTTGCGGAG
GCGGCTATGGCGACGGGAATGTTGGGGCTGGACACGATTGATTTCGGGAG
GCGAAGCGCCGTGGAACATGAGCTAGAGGGGGCACGGGCGGAGGTGGGGG
GGAGGGGGAATGCAGTATTTGATGAGACGGGTCATTTTTTGGTGTACGCA
AGTTTGGTCGGGATTAAGATTGTGAATGTGGAGACGAATCGGGTGGTGAA
GGTGTTGGGGAAGATTGAGAGTGGGGAGCGGTTTTTGCGGGTGTGTTTGT
TTCAGGGGGTCCCTAGAGTGGACAGTCAGCTGGTTAAGGCATTGAACAAG
GGCAAGACCGCCAGTAGTGTCGAGGAAATGCGTGCGCAGTTGCAGCCGGA
TCCGACAGTGGAGGCCAAGGTGGCGTCAGCTGTCGTCGACGACGCGCAGC
AGCAGTTGGGCAAGGCGGCAATTTTGAGGACCACTATGGGCGACATTCAC
TTGAAATTGTTTAAGGAGGAGTGTCCGCGGACGATTGAGAATTTCGTGGG
CCTGGCCAGGAAGGGTTATTACGACAATGTCTTGTTCCACCGGGTGATTA
AGGGGTTCATGGTCCAGACAGGGGACCCACAGGGGGACGGGACGGGGGGA
GAGTCGATTTGGGGGGGCGAGTTCGAGGACGAGTTCCATCGGAACCTGAG
GCATGATCGTCCGTTTACTGTGTCGATGGCGAACGCGGGTCCGGGGACGA
ACGGGAGTCAGTTTTTCATCACTACGGTGCCGACGCCGTGGTTGGATGGG
AAGCACACCGTGTTCGGGCGCGTGGTTCAGGGGATGGACGTAGTAAGTCA
GTTGCAGGAGGTGAAGGTGGACAACCAGGATAAGCCCTACGCGGACGTGA
AGATCATCAATGTTGATATTCTTTAG back to topprotein sequence of jgi.p|Nanoce1779_2|638895 >mRNA_4781-protein ID=mRNA_4781-protein|Name=jgi.p|Nanoce1779_2|638895|organism=Nannochloropsis oceanica|type=polypeptide|length=642bp
MSRRSSKQKRVENSSDDEDDGPAPPPPPPPPAHTSDDEDSDDDFGPVPVA
AGSAAAAGHEENEDEDEVGPTLKAKKKKKKRKLDHEEAFVAALPNADMYE
KSYMHRDIVTFCAFTPRTDFLVTASEDGHVKFWKKMPDGLEFVKHYHAHL
GGVRGLAVSADGLRLATTGVDKAVKFYDVLTFDLTYMMDVEYAPTHAAWC
HRPGEAHGRLVVADDDSPCVRIYRSDGSQEPIHVLPSLHAAPVTALAFSC
ADALMVSGDGKGMLEYWSTDLEGEGKEACYGFPRAKVGFKSKLDSDLFEL
MKKKTYATSLDVSKDGGKLAVVGKDRQIRVFDLRKGKLMRVYNEGMEVAE
AAMATGMLGLDTIDFGRRSAVEHELEGARAEVGGRGNAVFDETGHFLVYA
SLVGIKIVNVETNRVVKVLGKIESGERFLRVCLFQGVPRVDSQLVKALNK
GKTASSVEEMRAQLQPDPTVEAKVASAVVDDAQQQLGKAAILRTTMGDIH
LKLFKEECPRTIENFVGLARKGYYDNVLFHRVIKGFMVQTGDPQGDGTGG
ESIWGGEFEDEFHRNLRHDRPFTVSMANAGPGTNGSQFFITTVPTPWLDG
KHTVFGRVVQGMDVVSQLQEVKVDNQDKPYADVKIINVDIL* back to topmRNA from alignment at scaffold_9:615296..617354- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_4781 ID=mRNA_4781|Name=jgi.p|Nanoce1779_2|638895|organism=Nannochloropsis oceanica|type=mRNA|length=2059bp|location=Sequence derived from alignment at scaffold_9:615296..617354- (Nannochloropsis oceanica)
ATGTCTAGGAGGAGCAGCAAGCAAAAGCGGGTCGAAAACAGCAGCGACGA
CGAGGACGATGGCCCGGCCCCTCCTCCGCCTCCCCCTCCCCCCGCCCACA
CGAGCGACGACGAAGACAGCGATGACGACTTTGGCCCCGTGCCCGTGGCT
GCTGGCAGTGCCGCTGCAGCTGGTCATGAAGAGAACGAGGACGAGGACGA
GGTTGGCCCTACACTGAAGGCCAAGAAGAAGAAGAAGAAGCGGAAGCTCG
ACCACGAGGAGGCTTTTGTTGCCGCGTTGCCCAATGCGGACATGTACGAA
AAGAGTTACATGCATCGAGATATCGTCACGTTTTGTGCCTTTACCCCACG
GACGGACTTTTTGGTGACGGCGTCGGAGGACGGACATGTCAAATTCTGGA
AAAAGATGCCTGATGGCCTCGAATTTGTCAAGCATTACCACGCTCATCTG
GGGGGTGTTCGCGGGTTGGCCGTGAGTGCGGATGGACTGCGGCTTGCGAC
GACGGGGGTGGATAAAGCTGTAAAATTTTATGATGTCCTGACGTTTGATT
TGACGTATATGATGGATGTAGAGTATGCGCCGACGCATGCGGCGTGGTGT
CATCGCCCGGGGGAGGCACATGGGAGGCTGGTAGTTGCTGATGATGACAG
CCCTTGCGTGAGAATCTATCGATCTGATGGGAGTCAAGAGCCTATTCATG
TCTTGCCATCCTTGCATGCTGCGCCGGTGACGGCGTTGGCGTTTTCATGC
GCGGATGCATTGATGGTGTCGGGGGATGGGAAAGGCATGCTGGAGTACTG
GTCTACCGACTTGGAGGGGGAGGGGAAGGAGGCTTGCTATGGCTTCCCGC
GGGCAAAAGTGGGGTTTAAGAGTAAGTTGGACTCTGATTTGTTTGAATTG
ATGAAGAAAAAGACTTATGCGACGAGTTTGGATGTCTCGAAGGATGGGGG
AAAACTGGCGGTGGTGGGGAAGGATCGTCAAATCCGGGTATTCGACTTGA
GGAAGGGAAAGTTAATGAGGGTGTATAATGAGGGAATGGAGGTTGCGGAG
GCGGCTATGGCGACGGGAATGTTGGGGCTGGACACGATTGATTTCGGGAG
GCGAAGCGCCGTGGAACATGAGCTAGAGGGGGCACGGGCGGAGGTGGGGG
GGAGGGGGAATGCAGTATTTGATGAGACGGGTCATTTTTTGGTGTACGCA
AGTTTGGTCGGGATTAAGATTGTGAATGTGGAGACGAATCGGGTGGTGAA
GGTGTTGGGGAAGATTGAGAGTGGGGAGCGGTTTTTGCGGGTGTGTTTGT
TTCAGGGGGTCCCTAGAGTGGACAGTCAGCTGGTTAAGGCATTGAACAAG
GGCAAGACCGCCAGTAGTGTCGAGGAAATGCGTGCGCAGTTGCAGCCGGA
TCCGACAGTGGTGGCGACTGCATTTAATAAGAGGAGATTTTATTTGTTCA
CGAGGAGGATGCCGAGCGACGGGGGCGAAGGGGAGGGGGGGAGGAGGGGG
GGAGGGGGGGAGGGATGTATTGAACGAGAAACCCACGGCGGAGGAGGCCA
AGGTGGCGTCAGCTGTCGTCGACGACGCGCAGCAGCAGTTGGGCAAGGCG
GCAATTTTGAGGACCACTATGGGCGACATTCACTTGAAATTGTTTAAGGA
GGAGTGTCCGCGGACGATTGAGAATTTCGTGGGCCTGGCCAGGAAGGGTT
ATTACGACAATGTCTTGTTCCACCGGGTGATTAAGGGGTTCATGGTCCAG
ACAGGGGACCCACAGGGGGACGGGACGGGGGGAGAGTCGATTTGGGGGGG
CGAGTTCGAGGACGAGTTCCATCGGAACCTGAGGCATGATCGTCCGTTTA
CTGTGTCGATGGCGAACGCGGGTCCGGGGACGAACGGGAGTCAGTTTTTC
ATCACTACGGTGCCGACGCCGTGGTTGGATGGGAAGCACACCGTGTTCGG
GCGCGTGGTTCAGGGGATGGACGTAGTAAGTCAGTTGCAGGAGGTGAAGG
TGGACAACCAGGATAAGCCCTACGCGGACGTGAAGATCATCAATGTTGAT
ATTCTTTAG back to topCoding sequence (CDS) from alignment at scaffold_9:615296..617354- >mRNA_4781 ID=mRNA_4781|Name=jgi.p|Nanoce1779_2|638895|organism=Nannochloropsis oceanica|type=CDS|length=3852bp|location=Sequence derived from alignment at scaffold_9:615296..617354- (Nannochloropsis oceanica)
GAGGCCAAGGTGGCGTCAGCTGTCGTCGACGACGCGCAGCAGCAGTTGGG
CAAGGCGGCAATTTTGAGGACCACTATGGGCGACATTCACTTGAAATTGT
TTAAGGAGGAGTGTCCGCGGACGATTGAGAATTTCGTGGGCCTGGCCAGG
AAGGGTTATTACGACAATGTCTTGTTCCACCGGGTGATTAAGGGGTTCAT
GGTCCAGACAGGGGACCCACAGGGGGACGGGACGGGGGGAGAGTCGATTT
GGGGGGGCGAGTTCGAGGACGAGTTCCATCGGAACCTGAGGCATGATCGT
CCGTTTACTGTGTCGATGGCGAACGCGGGTCCGGGGACGAACGGGAGTCA
GTTTTTCATCACTACGGTGCCGACGCCGTGGTTGGATGGGAAGCACACCG
TGTTCGGGCGCGTGGTTCAGGGGATGGACGTAGTAAGTCAGTTGCAGGAG
GTGAAGGTGGACAACCAGGATAAGCCCTACGCGGACGTGAAGATCATCAA
TGTTGATATTCTTTAGATGTCTAGGAGGAGCAGCAAGCAAAAGCGGGTCG
AAAACAGCAGCGACGACGAGGACGATGGCCCGGCCCCTCCTCCGCCTCCC
CCTCCCCCCGCCCACACGAGCGACGACGAAGACAGCGATGACGACTTTGG
CCCCGTGCCCGTGGCTGCTGGCAGTGCCGCTGCAGCTGGTCATGAAGAGA
ACGAGGACGAGGACGAGGTTGGCCCTACACTGAAGGCCAAGAAGAAGAAG
AAGAAGCGGAAGCTCGACCACGAGGAGGCTTTTGTTGCCGCGTTGCCCAA
TGCGGACATGTACGAAAAGAGTTACATGCATCGAGATATCGTCACGTTTT
GTGCCTTTACCCCACGGACGGACTTTTTGGTGACGGCGTCGGAGGACGGA
CATGTCAAATTCTGGAAAAAGATGCCTGATGGCCTCGAATTTGTCAAGCA
TTACCACGCTCATCTGGGGGGTGTTCGCGGGTTGGCCGTGAGTGCGGATG
GACTGCGGCTTGCGACGACGGGGGTGGATAAAGCTGTAAAATTTTATGAT
GTCCTGACGTTTGATTTGACGTATATGATGGATGTAGAGTATGCGCCGAC
GCATGCGGCGTGGTGTCATCGCCCGGGGGAGGCACATGGGAGGCTGGTAG
TTGCTGATGATGACAGCCCTTGCGTGAGAATCTATCGATCTGATGGGAGT
CAAGAGCCTATTCATGTCTTGCCATCCTTGCATGCTGCGCCGGTGACGGC
GTTGGCGTTTTCATGCGCGGATGCATTGATGGTGTCGGGGGATGGGAAAG
GCATGCTGGAGTACTGGTCTACCGACTTGGAGGGGGAGGGGAAGGAGGCT
TGCTATGGCTTCCCGCGGGCAAAAGTGGGGTTTAAGAGTAAGTTGGACTC
TGATTTGTTTGAATTGATGAAGAAAAAGACTTATGCGACGAGTTTGGATG
TCTCGAAGGATGGGGGAAAACTGGCGGTGGTGGGGAAGGATCGTCAAATC
CGGGTATTCGACTTGAGGAAGGGAAAGTTAATGAGGGTGTATAATGAGGG
AATGGAGGTTGCGGAGGCGGCTATGGCGACGGGAATGTTGGGGCTGGACA
CGATTGATTTCGGGAGGCGAAGCGCCGTGGAACATGAGCTAGAGGGGGCA
CGGGCGGAGGTGGGGGGGAGGGGGAATGCAGTATTTGATGAGACGGGTCA
TTTTTTGGTGTACGCAAGTTTGGTCGGGATTAAGATTGTGAATGTGGAGA
CGAATCGGGTGGTGAAGGTGTTGGGGAAGATTGAGAGTGGGGAGCGGTTT
TTGCGGGTGTGTTTGTTTCAGGGGGTCCCTAGAGTGGACAGTCAGCTGGT
TAAGGCATTGAACAAGGGCAAGACCGCCAGTAGTGTCGAGGAAATGCGTG
CGCAGTTGCAGCCGGATCCGACAGTGGAGGCCAAGGTGGCGTCAGCTGTC
GTCGACGACGCGCAGCAGCAGTTGGGCAAGGCGGCAATTTTGAGGACCAC
TATGGGCGACATTCACTTGAAATTGTTTAAGGAGGAGTGTCCGCGGACGA
TTGAGAATTTCGTGGGCCTGGCCAGGAAGGGTTATTACGACAATGTCTTG
TTCCACCGGGTGATTAAGGGGTTCATGGTCCAGACAGGGGACCCACAGGG
GGACGGGACGGGGGGAGAGTCGATTTGGGGGGGCGAGTTCGAGGACGAGT
TCCATCGGAACCTGAGGCATGATCGTCCGTTTACTGTGTCGATGGCGAAC
GCGGGTCCGGGGACGAACGGGAGTCAGTTTTTCATCACTACGGTGCCGAC
GCCGTGGTTGGATGGGAAGCACACCGTGTTCGGGCGCGTGGTTCAGGGGA
TGGACGTAGTAAGTCAGTTGCAGGAGGTGAAGGTGGACAACCAGGATAAG
CCCTACGCGGACGTGAAGATCATCAATGTTGATATTCTTTAGATGTCTAG
GAGGAGCAGCAAGCAAAAGCGGGTCGAAAACAGCAGCGACGACGAGGACG
ATGGCCCGGCCCCTCCTCCGCCTCCCCCTCCCCCCGCCCACACGAGCGAC
GACGAAGACAGCGATGACGACTTTGGCCCCGTGCCCGTGGCTGCTGGCAG
TGCCGCTGCAGCTGGTCATGAAGAGAACGAGGACGAGGACGAGGTTGGCC
CTACACTGAAGGCCAAGAAGAAGAAGAAGAAGCGGAAGCTCGACCACGAG
GAGGCTTTTGTTGCCGCGTTGCCCAATGCGGACATGTACGAAAAGAGTTA
CATGCATCGAGATATCGTCACGTTTTGTGCCTTTACCCCACGGACGGACT
TTTTGGTGACGGCGTCGGAGGACGGACATGTCAAATTCTGGAAAAAGATG
CCTGATGGCCTCGAATTTGTCAAGCATTACCACGCTCATCTGGGGGGTGT
TCGCGGGTTGGCCGTGAGTGCGGATGGACTGCGGCTTGCGACGACGGGGG
TGGATAAAGCTGTAAAATTTTATGATGTCCTGACGTTTGATTTGACGTAT
ATGATGGATGTAGAGTATGCGCCGACGCATGCGGCGTGGTGTCATCGCCC
GGGGGAGGCACATGGGAGGCTGGTAGTTGCTGATGATGACAGCCCTTGCG
TGAGAATCTATCGATCTGATGGGAGTCAAGAGCCTATTCATGTCTTGCCA
TCCTTGCATGCTGCGCCGGTGACGGCGTTGGCGTTTTCATGCGCGGATGC
ATTGATGGTGTCGGGGGATGGGAAAGGCATGCTGGAGTACTGGTCTACCG
ACTTGGAGGGGGAGGGGAAGGAGGCTTGCTATGGCTTCCCGCGGGCAAAA
GTGGGGTTTAAGAGTAAGTTGGACTCTGATTTGTTTGAATTGATGAAGAA
AAAGACTTATGCGACGAGTTTGGATGTCTCGAAGGATGGGGGAAAACTGG
CGGTGGTGGGGAAGGATCGTCAAATCCGGGTATTCGACTTGAGGAAGGGA
AAGTTAATGAGGGTGTATAATGAGGGAATGGAGGTTGCGGAGGCGGCTAT
GGCGACGGGAATGTTGGGGCTGGACACGATTGATTTCGGGAGGCGAAGCG
CCGTGGAACATGAGCTAGAGGGGGCACGGGCGGAGGTGGGGGGGAGGGGG
AATGCAGTATTTGATGAGACGGGTCATTTTTTGGTGTACGCAAGTTTGGT
CGGGATTAAGATTGTGAATGTGGAGACGAATCGGGTGGTGAAGGTGTTGG
GGAAGATTGAGAGTGGGGAGCGGTTTTTGCGGGTGTGTTTGTTTCAGGGG
GTCCCTAGAGTGGACAGTCAGCTGGTTAAGGCATTGAACAAGGGCAAGAC
CGCCAGTAGTGTCGAGGAAATGCGTGCGCAGTTGCAGCCGGATCCGACAG
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