jgi.p|Nanoce1779_2|573073, mRNA_1680 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|573073
Unique Name	mRNA_1680
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1645
Alignment location	scaffold_1:1222341..1223985 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	573159
Track	FilteredModels2
ProteinId	573073

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:1222341..1223985 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|573073	gene_1680	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|573073	mRNA_1680-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1680	CDS_1680	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:1222341..1223985+
coding sequence from alignment at scaffold_1:1222341..1223985+

mRNA sequence

>mRNA_1680 ID=mRNA_1680|Name=jgi.p|Nanoce1779_2|573073|organism=Nannochloropsis oceanica|type=mRNA|length=1645bp
AACAGGGTCACCTGGCTCCTGCCCCTTTGGTACATGTTGTCACGTCGAAA
GGACTACTAGGCAAGCAAATCCATAGACTGCCTACCCTTCATTCCTCTCC
CACGATGGCCGACGACGCCATACCTTCCCCCCCGCCAGCACCAGCAGCAG
CACCATCGGCCAAGACAGGGAAGGCCACGGCTGTGATATCGTTCTCACCG
TCGTGGGAGGACCAGGAAGTCTCGATACCGGACATGAGCGCTGGGCTGGC
GAAGCTTTCTTTGACCGAGAAAGAAGCATCGAAGGACCAGGAGCAGGAGC
AGTTCGACGACAGGGACAAAAGATCAGATATAAGAACTGCCGCACCATCA
ACCCCTCCACTAGTACCACCCTTTATACCACGAGCAAGTAAAACCAAGAC
AAGACAACAACCAAAACCAGAGCCGCCAGGACGGGCCCCGGTGACACCTG
TACAACGCCGCAAACCGTCGCAGCAGCCTTCACAGGCTACGCCTTCCCCA
AACTTAAGTCGATACGGCGCAGACTTGGGGGATATTCGAGGTATATTTGA
CCGATCAAAATGTTGTGAGCGACGGAAAGATTCATTTCGAGGGTATCCTT
TGGATGACGGAAGTAGCTTTATTCACTCTCCTCTTCTGATGTCCTCCCAA
GGCGCACCACACGTGAGCCTGTCCTCTCTCATTCTCCACCACGACCTTCA
CAGCCTATTCACCTGGTACTATTCCTTTCTCTCTTCCAACGACTGTTATC
TCATATACATGTACAAACAAATGGATAGACGTGGTTCGCGACCTTCCCCC
GGAGGACATCTTGGCCCATGGCCTCTATCTCTGGGGCTTTCCCCCATCCT
CTTCCTCGACCACAGAGCGGGAGGTGCTAGTCAGTCCATGGACGGATGTC
GGGGCACTCATCACGTGGTTGCCACCGCATGATGCTTGTGCGGTGGCCAT
GTTCTATTCTATCCCGGTAGCTAATCGTGCGTTGCGGCAAGTCCATGCGC
CGACAGGGGTGACGGCACAGAGTCTGAAAAGGGCTGCGGCATCGGTCCAG
CAACAGGCATTAGCAGGTAAGATGAATTGAAAAGTGAGGAAAGATGACTG
GAGGAAAGACATGAAGTCAAATGAAAATATTCTGTAAATGTCGAAAGTAC
CAACAGTCCCACATACGCGTCGACAGCGGGACTGGCTATCCCGCCACGCC
CCAAGGGCGACACTGCCGTGCCCTCTCGTCTCATCCTGGGGGCGCTTGGC
ATTCGTTCCCCCAGCAGTACCCGACCTGCCATCGGCAGTGTGTCGGTTGG
TGGGGTAAGACGGTCAAGCAGGATACGTGAGCAGCAGGAGGCAGCGGCGG
CGGGAACGAGGAAACTCGAAGAGGGAAACGGCGGGGGATCGTGCTCGCAG
GGTGAGGGATAAATGGGTCGGGGGAACTGACCAAGTGAAGACATGTAAAG
ACAAATAAATATAAAGAGTAGTAGTATTTCCCCCCGGTTTTTCATAGTGA
TATTGCTGCATACTCTTGTCTCGTATGCTTTCTAAGTTGCCTACCTTTAG
CGAAAATCTTTCTTTCCGCATCCACAAAAATGATCATGCTCCCTTTACAT
ACAATACTTCCACTACCTATTACATACTTCCACTTTTTCTGATTC

protein sequence of jgi.p|Nanoce1779_2|573073

>mRNA_1680-protein ID=mRNA_1680-protein|Name=jgi.p|Nanoce1779_2|573073|organism=Nannochloropsis oceanica|type=polypeptide|length=276bp
MADDAIPSPPPAPAAAPSAKTGKATAVISFSPSWEDQEVSIPDMSAGLAK
LSLTEKEASKDQEQEQFDDRDKRSDIRTAAPSTPPLVPPFIPRASKTKTR
QQPKPEPPGRAPVTPVQRRKPSQQPSQATPSPNLSRYGADLGDIRGIFDR
SKCCERRKDSFRGYPLDDGSSFIHSPLLMSSQGAPHVSLSSLILHHDLHS
LFTWYYSFLSSNDCYLIYMYKQMDRRGSRPSPGGHLGPWPLSLGLSPILF
LDHRAGGASQSMDGCRGTHHVVATA*

mRNA from alignment at scaffold_1:1222341..1223985+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1680 ID=mRNA_1680|Name=jgi.p|Nanoce1779_2|573073|organism=Nannochloropsis oceanica|type=mRNA|length=1645bp|location=Sequence derived from alignment at scaffold_1:1222341..1223985+ (Nannochloropsis oceanica)
AACAGGGTCACCTGGCTCCTGCCCCTTTGGTACATGTTGTCACGTCGAAA
GGACTACTAGGCAAGCAAATCCATAGACTGCCTACCCTTCATTCCTCTCC
CACGATGGCCGACGACGCCATACCTTCCCCCCCGCCAGCACCAGCAGCAG
CACCATCGGCCAAGACAGGGAAGGCCACGGCTGTGATATCGTTCTCACCG
TCGTGGGAGGACCAGGAAGTCTCGATACCGGACATGAGCGCTGGGCTGGC
GAAGCTTTCTTTGACCGAGAAAGAAGCATCGAAGGACCAGGAGCAGGAGC
AGTTCGACGACAGGGACAAAAGATCAGATATAAGAACTGCCGCACCATCA
ACCCCTCCACTAGTACCACCCTTTATACCACGAGCAAGTAAAACCAAGAC
AAGACAACAACCAAAACCAGAGCCGCCAGGACGGGCCCCGGTGACACCTG
TACAACGCCGCAAACCGTCGCAGCAGCCTTCACAGGCTACGCCTTCCCCA
AACTTAAGTCGATACGGCGCAGACTTGGGGGATATTCGAGGTATATTTGA
CCGATCAAAATGTTGTGAGCGACGGAAAGATTCATTTCGAGGGTATCCTT
TGGATGACGGAAGTAGCTTTATTCACTCTCCTCTTCTGATGTCCTCCCAA
GGCGCACCACACGTGAGCCTGTCCTCTCTCATTCTCCACCACGACCTTCA
CAGCCTATTCACCTGGTACTATTCCTTTCTCTCTTCCAACGACTGTTATC
TCATATACATGTACAAACAAATGGATAGACGTGGTTCGCGACCTTCCCCC
GGAGGACATCTTGGCCCATGGCCTCTATCTCTGGGGCTTTCCCCCATCCT
CTTCCTCGACCACAGAGCGGGAGGTGCTAGTCAGTCCATGGACGGATGTC
GGGGCACTCATCACGTGGTTGCCACCGCATGATGCTTGTGCGGTGGCCAT
GTTCTATTCTATCCCGGTAGCTAATCGTGCGTTGCGGCAAGTCCATGCGC
CGACAGGGGTGACGGCACAGAGTCTGAAAAGGGCTGCGGCATCGGTCCAG
CAACAGGCATTAGCAGGTAAGATGAATTGAAAAGTGAGGAAAGATGACTG
GAGGAAAGACATGAAGTCAAATGAAAATATTCTGTAAATGTCGAAAGTAC
CAACAGTCCCACATACGCGTCGACAGCGGGACTGGCTATCCCGCCACGCC
CCAAGGGCGACACTGCCGTGCCCTCTCGTCTCATCCTGGGGGCGCTTGGC
ATTCGTTCCCCCAGCAGTACCCGACCTGCCATCGGCAGTGTGTCGGTTGG
TGGGGTAAGACGGTCAAGCAGGATACGTGAGCAGCAGGAGGCAGCGGCGG
CGGGAACGAGGAAACTCGAAGAGGGAAACGGCGGGGGATCGTGCTCGCAG
GGTGAGGGATAAATGGGTCGGGGGAACTGACCAAGTGAAGACATGTAAAG
ACAAATAAATATAAAGAGTAGTAGTATTTCCCCCCGGTTTTTCATAGTGA
TATTGCTGCATACTCTTGTCTCGTATGCTTTCTAAGTTGCCTACCTTTAG
CGAAAATCTTTCTTTCCGCATCCACAAAAATGATCATGCTCCCTTTACAT
ACAATACTTCCACTACCTATTACATACTTCCACTTTTTCTGATTC

Coding sequence (CDS) from alignment at scaffold_1:1222341..1223985+

>mRNA_1680 ID=mRNA_1680|Name=jgi.p|Nanoce1779_2|573073|organism=Nannochloropsis oceanica|type=CDS|length=828bp|location=Sequence derived from alignment at scaffold_1:1222341..1223985+ (Nannochloropsis oceanica)
ATGGCCGACGACGCCATACCTTCCCCCCCGCCAGCACCAGCAGCAGCACC
ATCGGCCAAGACAGGGAAGGCCACGGCTGTGATATCGTTCTCACCGTCGT
GGGAGGACCAGGAAGTCTCGATACCGGACATGAGCGCTGGGCTGGCGAAG
CTTTCTTTGACCGAGAAAGAAGCATCGAAGGACCAGGAGCAGGAGCAGTT
CGACGACAGGGACAAAAGATCAGATATAAGAACTGCCGCACCATCAACCC
CTCCACTAGTACCACCCTTTATACCACGAGCAAGTAAAACCAAGACAAGA
CAACAACCAAAACCAGAGCCGCCAGGACGGGCCCCGGTGACACCTGTACA
ACGCCGCAAACCGTCGCAGCAGCCTTCACAGGCTACGCCTTCCCCAAACT
TAAGTCGATACGGCGCAGACTTGGGGGATATTCGAGGTATATTTGACCGA
TCAAAATGTTGTGAGCGACGGAAAGATTCATTTCGAGGGTATCCTTTGGA
TGACGGAAGTAGCTTTATTCACTCTCCTCTTCTGATGTCCTCCCAAGGCG
CACCACACGTGAGCCTGTCCTCTCTCATTCTCCACCACGACCTTCACAGC
CTATTCACCTGGTACTATTCCTTTCTCTCTTCCAACGACTGTTATCTCAT
ATACATGTACAAACAAATGGATAGACGTGGTTCGCGACCTTCCCCCGGAG
GACATCTTGGCCCATGGCCTCTATCTCTGGGGCTTTCCCCCATCCTCTTC
CTCGACCACAGAGCGGGAGGTGCTAGTCAGTCCATGGACGGATGTCGGGG
CACTCATCACGTGGTTGCCACCGCATGA

Synonyms

Publications