jgi.p|Nanoce1779_2|588796, mRNA_4339 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|588796
Unique Name	mRNA_4339
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2153
Alignment location	scaffold_10:331635..333787 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	588882
Track	FilteredModels2
ProteinId	588796

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:331635..333787 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|588796	gene_4339	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|588796	mRNA_4339-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4339	CDS_4339	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:331635..333787-
coding sequence from alignment at scaffold_10:331635..333787-

mRNA sequence

>mRNA_4339 ID=mRNA_4339|Name=jgi.p|Nanoce1779_2|588796|organism=Nannochloropsis oceanica|type=mRNA|length=2153bp
GTGGGATCGTAGGGGTGTTGTCAGGGGAGACACCCATGGCGCCAAGCACC
AAGCCGTTCCATTTTTTATGACCTAAGACACCACACATGCGCCCTGTTAT
TCGTCTCAAGGCGTCAGTCAGACCCTTTAGCTTATGATTGTGCCCTGGGC
CTGGCTACGGGGGTCGCTTTACATCCTGAGGGTCTCGCAATGTGCAACAC
AAAGCAAGGGGCGGAGGCTAGAGATCAGCTGTGACACTTAAGCCAAAACT
AACGGCACAAACCATACGCCAACACCACGCACCACAGCATGGGCAACCGG
AGCAGTGCATATCCTGCAGACCACCTGGCGGTAAGTATGTCTAGTGGAAG
GGCACAGATTGATGGGATGTGAAAACAGTGGCATTAAAGGGGCTCCCTCT
TTGTCATGCATTTCCATCATCCCCTCCTCACCACGTCTTCTCGCTACCTG
CTTACACCCAGTCCACAAGAGGCGGTGCGTCGTCTTCATCTGCATCGACT
GGGGCGGCCTCAAGGAGCAACAGCAGCAGCGGCACTAGCAATCAAGGCCA
TTTCCATCGAGCCAGCAGCACCAGCAGTAGCAACACCAGCACCGGGTACA
GCCTCCCGCAAGACCAAACCACCTGCCCACAATGTCAACGCGTCCTGCTC
ATCCCGCACAATGCCCCCCTTTTCCGATGTCCGTGCGGTGTGCTATTTCG
AACCGAGACGTTGCAACAAGAACAAGGGCATCGTCGCAGTCTATTTGAGC
GGTCGGGGAGCGGGCTCCTGGGACATGATGGCCTGATGGGCCGTGCTGTG
ATCTGCCGTCGATGTCGCCGCGTTTCCATGCTCCCACAAACTGAGTCAGG
AGACAGTATATCTATCTGCAGGTGCGGCTCCCCGGCGTTGCCTTTGAATG
ATATGGTCATGTCTTTATTGGCGGAGGGGGAATTGGGCTTACTCATAGGA
GGGAGGAATGAAGGGTCTCTCTCACGGAGGGAAGAGATGGAGGGGGCATC
CAAAGACTTGATTGGAATCTTGCCCACATGCAAATTCTCGGCGGCAGCGG
CGAGAGCGGCGAGTGCCCGTGCGACTGCGACTGCGACTGCGACCGCAGAG
GAGTCTGCTGCGCCTGTGAGTAATAGTAGTGTGGCTAAGGGAGATGATGT
GGAGAAGAGAAAAGAGAGGGAGGGGGAGAAGGGAGCAGAGAAAAATGACT
CTTTTGCTGCTGCCACCGCTACGGATACTGCGTGGTCTACATGCTTACCG
ATGGAGGGAGGAGAAGGAGCATCAGCATTGCCAGGAAAGGGAAAAGACAG
CGGTGGTAATGGTAGGTGTTGTAATAGCAAAAGAGAACTACGAGAACACA
GCTCGTGTTCTACAGGAGGGGAAGGAGGAAAGATAGCAACGTCCACAGAA
ACAGAGACACCGATACCCAAGCAGTTGGATTCGCACAATGATGATTTGTC
TTGTCGGATTTGTTTCGAGGACTACGTAGATGGGGATGAATTAAGGGTGT
TGCCGTGTTTTCATCGGTTCCACACCGGTTGCTCTTTTGATTGGCTGACC
AGGAAGAAGACATGCCCGTTGTGTATGACGAGTATCGACGTGATCATGCG
GAGGCCTGAAGATCTGATGGGTGGTGGAGGAAGAGGTGAGGGATGAGCGA
GGGAGGGAGGAAAGATAGGAGGGCGATGTGGGAAGGCAGAAGACATATCT
GTTGAATGGCGTGTATTGTTAGATAGTTTCTTGATCTTATCATGCGGAGC
TTTGAAAGCCAGATTGTGGGTTACGGTGGAGGTAAGTTGAAATAAGAAGG
GAAGAATTGTTGGAAGAGGAGGCAGGAAGCACCGTCGTTAGCTTGCCTCT
CCTTCTGCTGTGCACAAGGACGATCAAGAAAAAAATAAGACAAATTTCAC
AGGTGCGAGTGAATATTAAGAATAGGAGCCACAGAAATGACAGAAATATT
GTTTGTAAATGCAAAGGAGGCAACAAGAGAAGAGTCGGCGAGAGAAATAA
GGTATGGCATGAAGCAACACAAGCAGCAGCAGCAACAGATTAGCTGCATT
AGCAGCAGCAGCAGCAACAGAGATGTCACCAAGACAGTTAACTCGAAAGT
TACGAAGGAAGCAAGAGATGCGAAGAAGAAATGTGAAGCCTAAAGCTGCA
GAG

protein sequence of jgi.p|Nanoce1779_2|588796

>mRNA_4339-protein ID=mRNA_4339-protein|Name=jgi.p|Nanoce1779_2|588796|organism=Nannochloropsis oceanica|type=polypeptide|length=287bp
MGRAVICRRCRRVSMLPQTESGDSISICRCGSPALPLNDMVMSLLAEGEL
GLLIGGRNEGSLSRREEMEGASKDLIGILPTCKFSAAAARAASARATATA
TATAEESAAPVSNSSVAKGDDVEKRKEREGEKGAEKNDSFAAATATDTAW
STCLPMEGGEGASALPGKGKDSGGNGRCCNSKRELREHSSCSTGGEGGKI
ATSTETETPIPKQLDSHNDDLSCRICFEDYVDGDELRVLPCFHRFHTGCS
FDWLTRKKTCPLCMTSIDVIMRRPEDLMGGGGRGEG*

mRNA from alignment at scaffold_10:331635..333787-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4339 ID=mRNA_4339|Name=jgi.p|Nanoce1779_2|588796|organism=Nannochloropsis oceanica|type=mRNA|length=2153bp|location=Sequence derived from alignment at scaffold_10:331635..333787- (Nannochloropsis oceanica)
GTGGGATCGTAGGGGTGTTGTCAGGGGAGACACCCATGGCGCCAAGCACC
AAGCCGTTCCATTTTTTATGACCTAAGACACCACACATGCGCCCTGTTAT
TCGTCTCAAGGCGTCAGTCAGACCCTTTAGCTTATGATTGTGCCCTGGGC
CTGGCTACGGGGGTCGCTTTACATCCTGAGGGTCTCGCAATGTGCAACAC
AAAGCAAGGGGCGGAGGCTAGAGATCAGCTGTGACACTTAAGCCAAAACT
AACGGCACAAACCATACGCCAACACCACGCACCACAGCATGGGCAACCGG
AGCAGTGCATATCCTGCAGACCACCTGGCGGTAAGTATGTCTAGTGGAAG
GGCACAGATTGATGGGATGTGAAAACAGTGGCATTAAAGGGGCTCCCTCT
TTGTCATGCATTTCCATCATCCCCTCCTCACCACGTCTTCTCGCTACCTG
CTTACACCCAGTCCACAAGAGGCGGTGCGTCGTCTTCATCTGCATCGACT
GGGGCGGCCTCAAGGAGCAACAGCAGCAGCGGCACTAGCAATCAAGGCCA
TTTCCATCGAGCCAGCAGCACCAGCAGTAGCAACACCAGCACCGGGTACA
GCCTCCCGCAAGACCAAACCACCTGCCCACAATGTCAACGCGTCCTGCTC
ATCCCGCACAATGCCCCCCTTTTCCGATGTCCGTGCGGTGTGCTATTTCG
AACCGAGACGTTGCAACAAGAACAAGGGCATCGTCGCAGTCTATTTGAGC
GGTCGGGGAGCGGGCTCCTGGGACATGATGGCCTGATGGGCCGTGCTGTG
ATCTGCCGTCGATGTCGCCGCGTTTCCATGCTCCCACAAACTGAGTCAGG
AGACAGTATATCTATCTGCAGGTGCGGCTCCCCGGCGTTGCCTTTGAATG
ATATGGTCATGTCTTTATTGGCGGAGGGGGAATTGGGCTTACTCATAGGA
GGGAGGAATGAAGGGTCTCTCTCACGGAGGGAAGAGATGGAGGGGGCATC
CAAAGACTTGATTGGAATCTTGCCCACATGCAAATTCTCGGCGGCAGCGG
CGAGAGCGGCGAGTGCCCGTGCGACTGCGACTGCGACTGCGACCGCAGAG
GAGTCTGCTGCGCCTGTGAGTAATAGTAGTGTGGCTAAGGGAGATGATGT
GGAGAAGAGAAAAGAGAGGGAGGGGGAGAAGGGAGCAGAGAAAAATGACT
CTTTTGCTGCTGCCACCGCTACGGATACTGCGTGGTCTACATGCTTACCG
ATGGAGGGAGGAGAAGGAGCATCAGCATTGCCAGGAAAGGGAAAAGACAG
CGGTGGTAATGGTAGGTGTTGTAATAGCAAAAGAGAACTACGAGAACACA
GCTCGTGTTCTACAGGAGGGGAAGGAGGAAAGATAGCAACGTCCACAGAA
ACAGAGACACCGATACCCAAGCAGTTGGATTCGCACAATGATGATTTGTC
TTGTCGGATTTGTTTCGAGGACTACGTAGATGGGGATGAATTAAGGGTGT
TGCCGTGTTTTCATCGGTTCCACACCGGTTGCTCTTTTGATTGGCTGACC
AGGAAGAAGACATGCCCGTTGTGTATGACGAGTATCGACGTGATCATGCG
GAGGCCTGAAGATCTGATGGGTGGTGGAGGAAGAGGTGAGGGATGAGCGA
GGGAGGGAGGAAAGATAGGAGGGCGATGTGGGAAGGCAGAAGACATATCT
GTTGAATGGCGTGTATTGTTAGATAGTTTCTTGATCTTATCATGCGGAGC
TTTGAAAGCCAGATTGTGGGTTACGGTGGAGGTAAGTTGAAATAAGAAGG
GAAGAATTGTTGGAAGAGGAGGCAGGAAGCACCGTCGTTAGCTTGCCTCT
CCTTCTGCTGTGCACAAGGACGATCAAGAAAAAAATAAGACAAATTTCAC
AGGTGCGAGTGAATATTAAGAATAGGAGCCACAGAAATGACAGAAATATT
GTTTGTAAATGCAAAGGAGGCAACAAGAGAAGAGTCGGCGAGAGAAATAA
GGTATGGCATGAAGCAACACAAGCAGCAGCAGCAACAGATTAGCTGCATT
AGCAGCAGCAGCAGCAACAGAGATGTCACCAAGACAGTTAACTCGAAAGT
TACGAAGGAAGCAAGAGATGCGAAGAAGAAATGTGAAGCCTAAAGCTGCA
GAG

Coding sequence (CDS) from alignment at scaffold_10:331635..333787-

>mRNA_4339 ID=mRNA_4339|Name=jgi.p|Nanoce1779_2|588796|organism=Nannochloropsis oceanica|type=CDS|length=861bp|location=Sequence derived from alignment at scaffold_10:331635..333787- (Nannochloropsis oceanica)
ATGGGCCGTGCTGTGATCTGCCGTCGATGTCGCCGCGTTTCCATGCTCCC
ACAAACTGAGTCAGGAGACAGTATATCTATCTGCAGGTGCGGCTCCCCGG
CGTTGCCTTTGAATGATATGGTCATGTCTTTATTGGCGGAGGGGGAATTG
GGCTTACTCATAGGAGGGAGGAATGAAGGGTCTCTCTCACGGAGGGAAGA
GATGGAGGGGGCATCCAAAGACTTGATTGGAATCTTGCCCACATGCAAAT
TCTCGGCGGCAGCGGCGAGAGCGGCGAGTGCCCGTGCGACTGCGACTGCG
ACTGCGACCGCAGAGGAGTCTGCTGCGCCTGTGAGTAATAGTAGTGTGGC
TAAGGGAGATGATGTGGAGAAGAGAAAAGAGAGGGAGGGGGAGAAGGGAG
CAGAGAAAAATGACTCTTTTGCTGCTGCCACCGCTACGGATACTGCGTGG
TCTACATGCTTACCGATGGAGGGAGGAGAAGGAGCATCAGCATTGCCAGG
AAAGGGAAAAGACAGCGGTGGTAATGGTAGGTGTTGTAATAGCAAAAGAG
AACTACGAGAACACAGCTCGTGTTCTACAGGAGGGGAAGGAGGAAAGATA
GCAACGTCCACAGAAACAGAGACACCGATACCCAAGCAGTTGGATTCGCA
CAATGATGATTTGTCTTGTCGGATTTGTTTCGAGGACTACGTAGATGGGG
ATGAATTAAGGGTGTTGCCGTGTTTTCATCGGTTCCACACCGGTTGCTCT
TTTGATTGGCTGACCAGGAAGAAGACATGCCCGTTGTGTATGACGAGTAT
CGACGTGATCATGCGGAGGCCTGAAGATCTGATGGGTGGTGGAGGAAGAG
GTGAGGGATGA

Synonyms

Publications