|
|
Properties
| Property Name | Value |
|---|
| TranscriptId | 589094 |
| Track | FilteredModels2 |
| ProteinId | 589008 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_10 | supercontig | scaffold_10:511513..513138 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_4406 ID=mRNA_4406|Name=jgi.p|Nanoce1779_2|589008|organism=Nannochloropsis oceanica|type=mRNA|length=1626bp
GGGAGGGATGCGTGAGATTGATGTGGTTGGTGCATCTGAGAGCCCGAGCC
CTTCGCAGCGGGCAGCGCTTTCGGCCCTGTATGGCTCTCATGTCGGGGCT
ATGACGGTGGCAGAGGAGAAGGAGGAAGAGGGGAAGGAGGGTGAGACAGA
AGACAACCACCTAAAGGAAACCAGGGAGGAGGGGGAAATTAGCGAGAAGG
TGAAGCGGATGTTGGCGAACCACTACCTGTCTGACAGACCAGAACTAAAG
AGGTATGACTCTGCCGATGCCGCCTTAAGGAAGGCCCGTGGCGGGAGAGA
GGGAGATACAAAAGGAAAGAAGGGAGGGAAGCACAGCCAGTGCGAGTTTT
CCACTTCCTCTTCGTTGTCTAGTCATTTAAAGAGTGAGCTGGAGTTGGGG
TCTTCGGAGGCTACAGTGGTACCGACGGTTTTGCAGGTTCCACCCCGTAT
GCACAGCCGGCGCCGTTCTAGTGAGGGGTTTGTGGAGATCCAGGGGTTAG
AAGATGATTTTCCTGATTCTCGCGAGTACCCCCAGCGTTTCCAGCAGCAG
CATTTTCACACGGGCAGCAATATAATCAGGGAAGAGGAGGAGGAGAAGGG
AGGGCCACAGCAGCTCATGATGCCGCAGTTGTCAAGATTTGATTCGGGGG
ATTACTTCATGCAGAAAGATACAAGAACTCGAGCAGCTGCTGGGAATGCG
GCTGTGATCGAGAGGCCTAGGGCGATTCAGGCTCAAGGAGAAAAGGGAGA
AAAGGAGACGGGGCATGGCGCCGTGAGGTGAGAGAATAATGGGTCTTCAT
GCAATACAGGAGATAAAGCTTTGGTTTTAAGATAGAACGAGATGGTGGAC
TAGATGGAAGGGAGAGAGATCTACGCGCATACAAATGCTGCAGCAGGAGG
ATGAGGAGGTGGAGGAAAATGAAACCATTAAATTATTATGTTTGTTACAC
TGTCTTTTGATGTATATATTCTTTCAAAAATGGGTTTGGTGTTTATCCAT
ATTTGTGCGTGTACGTGTGAATGTGCACATTTGTGTTATACTCATTTCTC
TTCTTGTCACTCCAGACTCGCAGTTGCAGGGGCCCGAAAAAAGTAGGGAG
GTGGGGAAGAGGCAAACCAAGAGATACAGATAGATCGCGAGATATTGTTT
GTAATGATAATGGTATAATAACGAATAACAGCAAGAACGACAAGAGCGAC
AACAACGACAACAACAATGACTACTACTTATATTACTATCACTACTACTA
CCACCAAAAGCAGAAAAAGGAGATTTTAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAGGTAAAAAGAGAAAGAAAGAAAGGAGGCGAGAGGAACAATGTG
TACCTTTATATACTGAATTGATAGGGGTCGAGATGACTTTTCCAAGAGAG
AACAAGTAGAAAAATAAGAAGAAGAGCAGCAGTAGCAACACGCAAGAAGC
TGAACTCGAAAACAGAGTAGAACGAACACCATTTAGGGTGTAATCTTTCT
TGAAATTTCTTACTTCCTTTGGACGGAAACACAGGAAATGTGCCAACATA
GAAAAGGAGGAATATGAATTTTGCGGGTACTTTCTACTCCAATGAAGAAG
AAAAAAATCACATGTACATTACTTAT back to topprotein sequence of jgi.p|Nanoce1779_2|589008 >mRNA_4406-protein ID=mRNA_4406-protein|Name=jgi.p|Nanoce1779_2|589008|organism=Nannochloropsis oceanica|type=polypeptide|length=258bp
MREIDVVGASESPSPSQRAALSALYGSHVGAMTVAEEKEEEGKEGETEDN
HLKETREEGEISEKVKRMLANHYLSDRPELKRYDSADAALRKARGGREGD
TKGKKGGKHSQCEFSTSSSLSSHLKSELELGSSEATVVPTVLQVPPRMHS
RRRSSEGFVEIQGLEDDFPDSREYPQRFQQQHFHTGSNIIREEEEEKGGP
QQLMMPQLSRFDSGDYFMQKDTRTRAAAGNAAVIERPRAIQAQGEKGEKE
TGHGAVR* back to topmRNA from alignment at scaffold_10:511513..513138+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_4406 ID=mRNA_4406|Name=jgi.p|Nanoce1779_2|589008|organism=Nannochloropsis oceanica|type=mRNA|length=1626bp|location=Sequence derived from alignment at scaffold_10:511513..513138+ (Nannochloropsis oceanica)
GGGAGGGATGCGTGAGATTGATGTGGTTGGTGCATCTGAGAGCCCGAGCC
CTTCGCAGCGGGCAGCGCTTTCGGCCCTGTATGGCTCTCATGTCGGGGCT
ATGACGGTGGCAGAGGAGAAGGAGGAAGAGGGGAAGGAGGGTGAGACAGA
AGACAACCACCTAAAGGAAACCAGGGAGGAGGGGGAAATTAGCGAGAAGG
TGAAGCGGATGTTGGCGAACCACTACCTGTCTGACAGACCAGAACTAAAG
AGGTATGACTCTGCCGATGCCGCCTTAAGGAAGGCCCGTGGCGGGAGAGA
GGGAGATACAAAAGGAAAGAAGGGAGGGAAGCACAGCCAGTGCGAGTTTT
CCACTTCCTCTTCGTTGTCTAGTCATTTAAAGAGTGAGCTGGAGTTGGGG
TCTTCGGAGGCTACAGTGGTACCGACGGTTTTGCAGGTTCCACCCCGTAT
GCACAGCCGGCGCCGTTCTAGTGAGGGGTTTGTGGAGATCCAGGGGTTAG
AAGATGATTTTCCTGATTCTCGCGAGTACCCCCAGCGTTTCCAGCAGCAG
CATTTTCACACGGGCAGCAATATAATCAGGGAAGAGGAGGAGGAGAAGGG
AGGGCCACAGCAGCTCATGATGCCGCAGTTGTCAAGATTTGATTCGGGGG
ATTACTTCATGCAGAAAGATACAAGAACTCGAGCAGCTGCTGGGAATGCG
GCTGTGATCGAGAGGCCTAGGGCGATTCAGGCTCAAGGAGAAAAGGGAGA
AAAGGAGACGGGGCATGGCGCCGTGAGGTGAGAGAATAATGGGTCTTCAT
GCAATACAGGAGATAAAGCTTTGGTTTTAAGATAGAACGAGATGGTGGAC
TAGATGGAAGGGAGAGAGATCTACGCGCATACAAATGCTGCAGCAGGAGG
ATGAGGAGGTGGAGGAAAATGAAACCATTAAATTATTATGTTTGTTACAC
TGTCTTTTGATGTATATATTCTTTCAAAAATGGGTTTGGTGTTTATCCAT
ATTTGTGCGTGTACGTGTGAATGTGCACATTTGTGTTATACTCATTTCTC
TTCTTGTCACTCCAGACTCGCAGTTGCAGGGGCCCGAAAAAAGTAGGGAG
GTGGGGAAGAGGCAAACCAAGAGATACAGATAGATCGCGAGATATTGTTT
GTAATGATAATGGTATAATAACGAATAACAGCAAGAACGACAAGAGCGAC
AACAACGACAACAACAATGACTACTACTTATATTACTATCACTACTACTA
CCACCAAAAGCAGAAAAAGGAGATTTTAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAGGTAAAAAGAGAAAGAAAGAAAGGAGGCGAGAGGAACAATGTG
TACCTTTATATACTGAATTGATAGGGGTCGAGATGACTTTTCCAAGAGAG
AACAAGTAGAAAAATAAGAAGAAGAGCAGCAGTAGCAACACGCAAGAAGC
TGAACTCGAAAACAGAGTAGAACGAACACCATTTAGGGTGTAATCTTTCT
TGAAATTTCTTACTTCCTTTGGACGGAAACACAGGAAATGTGCCAACATA
GAAAAGGAGGAATATGAATTTTGCGGGTACTTTCTACTCCAATGAAGAAG
AAAAAAATCACATGTACATTACTTAT back to topCoding sequence (CDS) from alignment at scaffold_10:511513..513138+ >mRNA_4406 ID=mRNA_4406|Name=jgi.p|Nanoce1779_2|589008|organism=Nannochloropsis oceanica|type=CDS|length=774bp|location=Sequence derived from alignment at scaffold_10:511513..513138+ (Nannochloropsis oceanica)
ATGCGTGAGATTGATGTGGTTGGTGCATCTGAGAGCCCGAGCCCTTCGCA
GCGGGCAGCGCTTTCGGCCCTGTATGGCTCTCATGTCGGGGCTATGACGG
TGGCAGAGGAGAAGGAGGAAGAGGGGAAGGAGGGTGAGACAGAAGACAAC
CACCTAAAGGAAACCAGGGAGGAGGGGGAAATTAGCGAGAAGGTGAAGCG
GATGTTGGCGAACCACTACCTGTCTGACAGACCAGAACTAAAGAGGTATG
ACTCTGCCGATGCCGCCTTAAGGAAGGCCCGTGGCGGGAGAGAGGGAGAT
ACAAAAGGAAAGAAGGGAGGGAAGCACAGCCAGTGCGAGTTTTCCACTTC
CTCTTCGTTGTCTAGTCATTTAAAGAGTGAGCTGGAGTTGGGGTCTTCGG
AGGCTACAGTGGTACCGACGGTTTTGCAGGTTCCACCCCGTATGCACAGC
CGGCGCCGTTCTAGTGAGGGGTTTGTGGAGATCCAGGGGTTAGAAGATGA
TTTTCCTGATTCTCGCGAGTACCCCCAGCGTTTCCAGCAGCAGCATTTTC
ACACGGGCAGCAATATAATCAGGGAAGAGGAGGAGGAGAAGGGAGGGCCA
CAGCAGCTCATGATGCCGCAGTTGTCAAGATTTGATTCGGGGGATTACTT
CATGCAGAAAGATACAAGAACTCGAGCAGCTGCTGGGAATGCGGCTGTGA
TCGAGAGGCCTAGGGCGATTCAGGCTCAAGGAGAAAAGGGAGAAAAGGAG
ACGGGGCATGGCGCCGTGAGGTGA back to top
|