jgi.p|Nanoce1779_2|589209, mRNA_4465 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|589209
Unique NamemRNA_4465
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length530
Alignment locationscaffold_10:662481..663287 -

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Properties
Property NameValue
TranscriptId589295
TrackFilteredModels2
ProteinId589209
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:662481..663287 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589209gene_4465Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589209mRNA_4465-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4465CDS_4465Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4465 ID=mRNA_4465|Name=jgi.p|Nanoce1779_2|589209|organism=Nannochloropsis oceanica|type=mRNA|length=530bp
ACAGACTCGAACGGTCAGAGAGAGAGAGCCATGCCTAACTGGTGGAATTT
ACCGTTCCGGGAGTTTGTGGTGAAGGAGGTGACCCGCCCGGGCTTCAGGG
AGTTTGCCGTGGGGGCCGTCGTGGTGTTCTTTGGGTTGGGCCTGAAGATC
AATGCCGGTATTACAGACAAGGACCGGGCAGAAAGCGCCTACTACCAGGA
CTTTATCGCGAAGAAGGACGATGGCGCGCACGGGCACCATTAGAGTATGA
TAGATGCAGGAGAGTAGGGCCAAGCGGTTTAGTAGAGCAGCAGCGGTGGA
GAGAGAGGAAAGGGGACGGATGATACGAGAAGAGGAAATTAGGAGGTGAA
ACCGTCTGTCGTGTGGTTACGCATTGTAGCGGAGGGCTCACTGGACAATG
TGGTTGAGCAATGCGGGTGGATGGAATTTGATGTACGTTTGAACAAGAGG
TTAAGCGAGCCACAAAAAGAAAAGACAAAGAGAAGGTAGGGCAGGAGATG
GGCCGCTGCACAAGATGGCATGTGCTCGAA
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protein sequence of jgi.p|Nanoce1779_2|589209

>mRNA_4465-protein ID=mRNA_4465-protein|Name=jgi.p|Nanoce1779_2|589209|organism=Nannochloropsis oceanica|type=polypeptide|length=71bp
MPNWWNLPFREFVVKEVTRPGFREFAVGAVVVFFGLGLKINAGITDKDRA
ESAYYQDFIAKKDDGAHGHH*
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mRNA from alignment at scaffold_10:662481..663287-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4465 ID=mRNA_4465|Name=jgi.p|Nanoce1779_2|589209|organism=Nannochloropsis oceanica|type=mRNA|length=807bp|location=Sequence derived from alignment at scaffold_10:662481..663287- (Nannochloropsis oceanica)
ACAGACTCGAACGGTCAGAGAGAGAGAGCCATGCCTAACTGGTGGAATTT ACCGTTCCGGGAGTTTGTGGTGAAGGAGGTGACCCGCCCGGGCTTCAGGG AGTTTGCCGTGGGGGCCGTGTGAGTAGGGTAGATTGGAGGGTTGGAGTGC AAAGGGAGGGTGCCCAACTGGGCCTAGCATGAGTAATAGTATTGTGTTTA CTGTCTTGTATGCTCTATTGGGGTGAATTGGTAGAGATTTCGTCGTTCCT GCGGTGGGGTTTGGAGATGGTACCAAGCGCCCGTACCTGGAGGGAAGAGT GCATGGCCGTTTCGTATGCTTTCTTTGATTATCGTGTCGGCACCTTGCTG TCATTGATCTCACCTTTGATTTTCTTCCTGTCCCACACATATACAGCGTG GTGTTCTTTGGGTTGGGCCTGAAGATCAATGCCGGTATTACAGACAAGGA CCGGGCAGAAAGCGCCTACTACCAGGACTTTATCGCGAAGAAGGACGATG GCGCGCACGGGCACCATTAGAGTATGATAGATGCAGGAGAGTAGGGCCAA GCGGTTTAGTAGAGCAGCAGCGGTGGAGAGAGAGGAAAGGGGACGGATGA TACGAGAAGAGGAAATTAGGAGGTGAAACCGTCTGTCGTGTGGTTACGCA TTGTAGCGGAGGGCTCACTGGACAATGTGGTTGAGCAATGCGGGTGGATG GAATTTGATGTACGTTTGAACAAGAGGTTAAGCGAGCCACAAAAAGAAAA GACAAAGAGAAGGTAGGGCAGGAGATGGGCCGCTGCACAAGATGGCATGT GCTCGAA
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Coding sequence (CDS) from alignment at scaffold_10:662481..663287-

>mRNA_4465 ID=mRNA_4465|Name=jgi.p|Nanoce1779_2|589209|organism=Nannochloropsis oceanica|type=CDS|length=426bp|location=Sequence derived from alignment at scaffold_10:662481..663287- (Nannochloropsis oceanica)
CGTGGTGTTCTTTGGGTTGGGCCTGAAGATCAATGCCGGTATTACAGACA
AGGACCGGGCAGAAAGCGCCTACTACCAGGACTTTATCGCGAAGAAGGAC
GATGGCGCGCACGGGCACCATTAGATGCCTAACTGGTGGAATTTACCGTT
CCGGGAGTTTGTGGTGAAGGAGGTGACCCGCCCGGGCTTCAGGGAGTTTG
CCGTGGGGGCCGTCGTGGTGTTCTTTGGGTTGGGCCTGAAGATCAATGCC
GGTATTACAGACAAGGACCGGGCAGAAAGCGCCTACTACCAGGACTTTAT
CGCGAAGAAGGACGATGGCGCGCACGGGCACCATTAGATGCCTAACTGGT
GGAATTTACCGTTCCGGGAGTTTGTGGTGAAGGAGGTGACCCGCCCGGGC
TTCAGGGAGTTTGCCGTGGGGGCCGT
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Synonyms
Publications