jgi.p|Nanoce1779_2|589299, mRNA_4491 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|589299
Unique NamemRNA_4491
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1686
Alignment locationscaffold_10:733978..735663 -

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Properties
Property NameValue
TranscriptId589385
TrackFilteredModels2
ProteinId589299
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:733978..735663 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589299gene_4491Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589299mRNA_4491-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4491CDS_4491Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4491 ID=mRNA_4491|Name=jgi.p|Nanoce1779_2|589299|organism=Nannochloropsis oceanica|type=mRNA|length=1686bp
ACAGGTGGAAATCAACAAGAGGGCCTGTAATCTACCCATGCCCAGGGGTG
GAGAGAAGACTTTGCGCTGGGTTGGCGCAGAAGCACCAAACCTCTGAGCT
CTTGCCGCCTTGTTCTTCCTTTTGCGAGTCCGCCTGCACCACACCGCGAT
CTCTAATTGGGTTGCCACTTACGTGACCCTTACTTGTCTCATCTTGCGAT
AAATTATTTGCACGCTACGGCCTGCTAAGCGCAGCACAAAAGCCGTCTCC
TCCCGCGCTTCTTCTCATCACTTGAAGGAATGGGAGACCTGGAAGCAACC
ATCAAGGGCATTGGTGTCTCAGGCACTTTGGTGTATGTTGCTATGCTGCT
CTACATCACGTGGCGGACATGCTTTCTCCTCTTTCTCCAACCACCCCCAG
CGACTGCCTCCAGACAACAGCAGCTAACCTTGCCCGCCAAGAAAAGCTTC
CATGTCGCCTTGTTCTTTTCAGCGTTGCTCGACCTGAGTTATTACGCTAA
ACTATGTACAGGGGCGATTACTAGCACTTCATTTTCGCTACACCTGATGG
CGCTGTGGGCGGAGCTGACGGCTTTCAGTTGCGTCGTCGTGGTCTGGTCC
CGAGTGCTAAATGCGGCTAAAGAGAAAGACAGCGTCTTGACGTACGTGAT
CGCCCTCGATGGATTTGTCCTCGTGTGGACACTGGTGGTGATTTGCCTTG
TGATTGTCGCCAAGGATAATGTCGATCAATGGGTCTCTCCAAGCAGTCAA
CCCTACATCTTTTTCTATCTAGTGCAAGCTCTAGCCCTACTCTCCTGTTG
CCTCGCCCTCCTATATCACGGCATCCGCCTGCAGTACATCGTTAGGAATC
ACCCTCGTTGGGAGCCTCTGAGGAGGGAGAGGCGGATGCGGATTGTGCTA
CGAATCAACGCTGTCCTCTCCGTGTGTACTTTCTGCTTCCTCTTGCGCGT
TGTACTCTTAATGGCTCATTTTATCCAAGCAGAAGCCCACCAACAAGCTC
GTTTTCTGGACCCGGCCGCGTTAGTGAATTGGTATGTGTGGTGTAATTGG
GTCCCAATGTGCATACCTGCTTCAATTCTTCTCTTTATGATGAAAAACAA
TCCAGGGCGAGAACGAGGGAACATCGGGGGTGCTACTGATGGTGGAGGAG
GGTTGACTTTGGGATTGGCAGCCCAAGCAGGAGGAGGGCAAGCAGGAGGA
GGAGCTGAGACTGTAGGGATATTGCGTGAGTGGGAAGAACGCTTGGTCTC
CCTAAATTCCTCGGGAAACACATCGATAAATCGGAACTACTGGCGGCCGA
ACTCGGCGAGCTTGTACAGCCCCCCTTCTCCGTCTGAGGTTGATGCTGTT
GGTCCAATTTCGCCTGCGGCTGCTACTCCGCTGACGCCTGCTACTGCGAT
CAGTTGTGGGCGGAGCAAGCCAGCGGCGGTGTTGAATTTGGGGATGGAGC
ACAACGGGAGTAAGGAACAGGGTTCCGGATCAACGGAGGACGAGCCTTTG
ATTCTGGAGGCAGTATAAGTGTAATTTCATTATCTCTTGATTTTTTTTTG
GTCTGTCGATAGGATTTCGGTGACGGTGAAGAAAACTAAAGAGAAGCCAG
CAAGCTAGCGCGACACTTTTGCATGTAAGGATGTGTAGGTACAACAAAAA
TGAAAAGAATATATGAAAGTTGAAGCTGCTTTGTCA
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protein sequence of jgi.p|Nanoce1779_2|589299

>mRNA_4491-protein ID=mRNA_4491-protein|Name=jgi.p|Nanoce1779_2|589299|organism=Nannochloropsis oceanica|type=polypeptide|length=413bp
MGDLEATIKGIGVSGTLVYVAMLLYITWRTCFLLFLQPPPATASRQQQLT
LPAKKSFHVALFFSALLDLSYYAKLCTGAITSTSFSLHLMALWAELTAFS
CVVVVWSRVLNAAKEKDSVLTYVIALDGFVLVWTLVVICLVIVAKDNVDQ
WVSPSSQPYIFFYLVQALALLSCCLALLYHGIRLQYIVRNHPRWEPLRRE
RRMRIVLRINAVLSVCTFCFLLRVVLLMAHFIQAEAHQQARFLDPAALVN
WYVWCNWVPMCIPASILLFMMKNNPGRERGNIGGATDGGGGLTLGLAAQA
GGGQAGGGAETVGILREWEERLVSLNSSGNTSINRNYWRPNSASLYSPPS
PSEVDAVGPISPAAATPLTPATAISCGRSKPAAVLNLGMEHNGSKEQGSG
STEDEPLILEAV*
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mRNA from alignment at scaffold_10:733978..735663-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4491 ID=mRNA_4491|Name=jgi.p|Nanoce1779_2|589299|organism=Nannochloropsis oceanica|type=mRNA|length=1686bp|location=Sequence derived from alignment at scaffold_10:733978..735663- (Nannochloropsis oceanica)
ACAGGTGGAAATCAACAAGAGGGCCTGTAATCTACCCATGCCCAGGGGTG
GAGAGAAGACTTTGCGCTGGGTTGGCGCAGAAGCACCAAACCTCTGAGCT
CTTGCCGCCTTGTTCTTCCTTTTGCGAGTCCGCCTGCACCACACCGCGAT
CTCTAATTGGGTTGCCACTTACGTGACCCTTACTTGTCTCATCTTGCGAT
AAATTATTTGCACGCTACGGCCTGCTAAGCGCAGCACAAAAGCCGTCTCC
TCCCGCGCTTCTTCTCATCACTTGAAGGAATGGGAGACCTGGAAGCAACC
ATCAAGGGCATTGGTGTCTCAGGCACTTTGGTGTATGTTGCTATGCTGCT
CTACATCACGTGGCGGACATGCTTTCTCCTCTTTCTCCAACCACCCCCAG
CGACTGCCTCCAGACAACAGCAGCTAACCTTGCCCGCCAAGAAAAGCTTC
CATGTCGCCTTGTTCTTTTCAGCGTTGCTCGACCTGAGTTATTACGCTAA
ACTATGTACAGGGGCGATTACTAGCACTTCATTTTCGCTACACCTGATGG
CGCTGTGGGCGGAGCTGACGGCTTTCAGTTGCGTCGTCGTGGTCTGGTCC
CGAGTGCTAAATGCGGCTAAAGAGAAAGACAGCGTCTTGACGTACGTGAT
CGCCCTCGATGGATTTGTCCTCGTGTGGACACTGGTGGTGATTTGCCTTG
TGATTGTCGCCAAGGATAATGTCGATCAATGGGTCTCTCCAAGCAGTCAA
CCCTACATCTTTTTCTATCTAGTGCAAGCTCTAGCCCTACTCTCCTGTTG
CCTCGCCCTCCTATATCACGGCATCCGCCTGCAGTACATCGTTAGGAATC
ACCCTCGTTGGGAGCCTCTGAGGAGGGAGAGGCGGATGCGGATTGTGCTA
CGAATCAACGCTGTCCTCTCCGTGTGTACTTTCTGCTTCCTCTTGCGCGT
TGTACTCTTAATGGCTCATTTTATCCAAGCAGAAGCCCACCAACAAGCTC
GTTTTCTGGACCCGGCCGCGTTAGTGAATTGGTATGTGTGGTGTAATTGG
GTCCCAATGTGCATACCTGCTTCAATTCTTCTCTTTATGATGAAAAACAA
TCCAGGGCGAGAACGAGGGAACATCGGGGGTGCTACTGATGGTGGAGGAG
GGTTGACTTTGGGATTGGCAGCCCAAGCAGGAGGAGGGCAAGCAGGAGGA
GGAGCTGAGACTGTAGGGATATTGCGTGAGTGGGAAGAACGCTTGGTCTC
CCTAAATTCCTCGGGAAACACATCGATAAATCGGAACTACTGGCGGCCGA
ACTCGGCGAGCTTGTACAGCCCCCCTTCTCCGTCTGAGGTTGATGCTGTT
GGTCCAATTTCGCCTGCGGCTGCTACTCCGCTGACGCCTGCTACTGCGAT
CAGTTGTGGGCGGAGCAAGCCAGCGGCGGTGTTGAATTTGGGGATGGAGC
ACAACGGGAGTAAGGAACAGGGTTCCGGATCAACGGAGGACGAGCCTTTG
ATTCTGGAGGCAGTATAAGTGTAATTTCATTATCTCTTGATTTTTTTTTG
GTCTGTCGATAGGATTTCGGTGACGGTGAAGAAAACTAAAGAGAAGCCAG
CAAGCTAGCGCGACACTTTTGCATGTAAGGATGTGTAGGTACAACAAAAA
TGAAAAGAATATATGAAAGTTGAAGCTGCTTTGTCA
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Coding sequence (CDS) from alignment at scaffold_10:733978..735663-

>mRNA_4491 ID=mRNA_4491|Name=jgi.p|Nanoce1779_2|589299|organism=Nannochloropsis oceanica|type=CDS|length=1239bp|location=Sequence derived from alignment at scaffold_10:733978..735663- (Nannochloropsis oceanica)
ATGGGAGACCTGGAAGCAACCATCAAGGGCATTGGTGTCTCAGGCACTTT
GGTGTATGTTGCTATGCTGCTCTACATCACGTGGCGGACATGCTTTCTCC
TCTTTCTCCAACCACCCCCAGCGACTGCCTCCAGACAACAGCAGCTAACC
TTGCCCGCCAAGAAAAGCTTCCATGTCGCCTTGTTCTTTTCAGCGTTGCT
CGACCTGAGTTATTACGCTAAACTATGTACAGGGGCGATTACTAGCACTT
CATTTTCGCTACACCTGATGGCGCTGTGGGCGGAGCTGACGGCTTTCAGT
TGCGTCGTCGTGGTCTGGTCCCGAGTGCTAAATGCGGCTAAAGAGAAAGA
CAGCGTCTTGACGTACGTGATCGCCCTCGATGGATTTGTCCTCGTGTGGA
CACTGGTGGTGATTTGCCTTGTGATTGTCGCCAAGGATAATGTCGATCAA
TGGGTCTCTCCAAGCAGTCAACCCTACATCTTTTTCTATCTAGTGCAAGC
TCTAGCCCTACTCTCCTGTTGCCTCGCCCTCCTATATCACGGCATCCGCC
TGCAGTACATCGTTAGGAATCACCCTCGTTGGGAGCCTCTGAGGAGGGAG
AGGCGGATGCGGATTGTGCTACGAATCAACGCTGTCCTCTCCGTGTGTAC
TTTCTGCTTCCTCTTGCGCGTTGTACTCTTAATGGCTCATTTTATCCAAG
CAGAAGCCCACCAACAAGCTCGTTTTCTGGACCCGGCCGCGTTAGTGAAT
TGGTATGTGTGGTGTAATTGGGTCCCAATGTGCATACCTGCTTCAATTCT
TCTCTTTATGATGAAAAACAATCCAGGGCGAGAACGAGGGAACATCGGGG
GTGCTACTGATGGTGGAGGAGGGTTGACTTTGGGATTGGCAGCCCAAGCA
GGAGGAGGGCAAGCAGGAGGAGGAGCTGAGACTGTAGGGATATTGCGTGA
GTGGGAAGAACGCTTGGTCTCCCTAAATTCCTCGGGAAACACATCGATAA
ATCGGAACTACTGGCGGCCGAACTCGGCGAGCTTGTACAGCCCCCCTTCT
CCGTCTGAGGTTGATGCTGTTGGTCCAATTTCGCCTGCGGCTGCTACTCC
GCTGACGCCTGCTACTGCGATCAGTTGTGGGCGGAGCAAGCCAGCGGCGG
TGTTGAATTTGGGGATGGAGCACAACGGGAGTAAGGAACAGGGTTCCGGA
TCAACGGAGGACGAGCCTTTGATTCTGGAGGCAGTATAA
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Synonyms
Publications