jgi.p|Nanoce1779_2|590177, mRNA_5740 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|590177
Unique Name	mRNA_5740
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1231
Alignment location	scaffold_11:459485..460715 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	590263
Track	FilteredModels2
ProteinId	590177

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_11	supercontig	scaffold_11:459485..460715 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|590177	gene_5740	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|590177	mRNA_5740-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5740	CDS_5740	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_11:459485..460715+
coding sequence from alignment at scaffold_11:459485..460715+

mRNA sequence

>mRNA_5740 ID=mRNA_5740|Name=jgi.p|Nanoce1779_2|590177|organism=Nannochloropsis oceanica|type=mRNA|length=1231bp
CCGTCTTCCTCCTCTGTGAGCTCGGCGTCAGAGGATGGAGAGAGCATGAG
CAGCGGAGGTGGAGGCAGAGGTATGTCGGCGGCAGGCGCAGCGCATCGGG
AGATAGTCCTCGATTTCAGCGAGATCTTCCGGTCTTCGCACGTGCCCATG
GCCGTGGTCTCGATCGATGGACGTATCCTGCAGTGCAACGACGAATTTAG
TCGCGTGACCGGATACACCAACAACAAGCTCACGGGCGTCACACTTTTTA
GCCTAGCCGCCCCCGAGTGCTTGGAGGAGCTCTTCAAATCCATCGCCCGC
CTCCTCTCAACGGCCGCCCTGGACGAGAATAACCCAGCCTATTTTGCAAC
GGCCGCCGCGCGTGCCGCACCTCTCTCGCAGCGAGGCTACCAACATGCCA
ACATTCTGCTCTCCCTGGTGCGTGACGAGGAGCGCCGCGCTCGGGCTTTC
CATTGCTGTATCGTAGCTCCTCACCAGAATCATGACGGGCAACGGGCAAC
AGAGGCTGAGGCGGCGGCAGACTCGGCCATGTCATGACACCGTGGAAGTG
GATAAGAGCAAAATGAGGATGGGGCGGGTAATGGCCTATGTAAATTCAAT
TTTATAAATAGAAAATAGGACTGCTTGGAGAGTGGATGAAGTCCAAGAGC
TAAATAGACAGCCAGGGCACATCAAGCGGGCAATGGGGCAAATTTGCATC
ACATAGGAAAAATATAACCTGTTCGAAAGCAGACTGCAAGCTTGAGACAC
CAATTGGTTGTCCGTGTGCAGCAAGAGGGAGGTTTAGCAGCCAAGGGACT
TCAGCGTCGTCTTGGTGCGGAGGAAAACGGACAGAGAGAAGGGCAAAAGA
GACTGTGAGTTCTTTCATTTGTTTGCATGGGATCCGTGGTACCTTGTAAA
GCACGAGGAAGGGAACGTTTTCACTCGACGCACGGAATACCTACCACCGC
ATCAGGCGAATGCCCTGGCGCAGCTGTTTTGTTTGTACCGATGTGCGCCT
TTTATCTTTATCTGATGGAGGTTGAGGTAAGCAAGAAAGTTAAAAGCGAG
AGAGGGGATTCGCTACCCAAGCAATAAAATTTAATGGACGAATGCTCTGT
GTTTCTTAAACTTATGGAACGGTTGGGAAGAGAGTGTGTGTCCGCGCGAG
ACGACACACGTAAGGTTTTGGCGGGGTGATTAATAAATTTGATAGCGCTT
TCTTTCTTGGCGTGCGCCATCTTGTGCGACG

protein sequence of jgi.p|Nanoce1779_2|590177

>mRNA_5740-protein ID=mRNA_5740-protein|Name=jgi.p|Nanoce1779_2|590177|organism=Nannochloropsis oceanica|type=polypeptide|length=164bp
MSSGGGGRGMSAAGAAHREIVLDFSEIFRSSHVPMAVVSIDGRILQCNDE
FSRVTGYTNNKLTGVTLFSLAAPECLEELFKSIARLLSTAALDENNPAYF
ATAAARAAPLSQRGYQHANILLSLVRDEERRARAFHCCIVAPHQNHDGQR
ATEAEAAADSAMS*

mRNA from alignment at scaffold_11:459485..460715+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5740 ID=mRNA_5740|Name=jgi.p|Nanoce1779_2|590177|organism=Nannochloropsis oceanica|type=mRNA|length=1231bp|location=Sequence derived from alignment at scaffold_11:459485..460715+ (Nannochloropsis oceanica)
CCGTCTTCCTCCTCTGTGAGCTCGGCGTCAGAGGATGGAGAGAGCATGAG
CAGCGGAGGTGGAGGCAGAGGTATGTCGGCGGCAGGCGCAGCGCATCGGG
AGATAGTCCTCGATTTCAGCGAGATCTTCCGGTCTTCGCACGTGCCCATG
GCCGTGGTCTCGATCGATGGACGTATCCTGCAGTGCAACGACGAATTTAG
TCGCGTGACCGGATACACCAACAACAAGCTCACGGGCGTCACACTTTTTA
GCCTAGCCGCCCCCGAGTGCTTGGAGGAGCTCTTCAAATCCATCGCCCGC
CTCCTCTCAACGGCCGCCCTGGACGAGAATAACCCAGCCTATTTTGCAAC
GGCCGCCGCGCGTGCCGCACCTCTCTCGCAGCGAGGCTACCAACATGCCA
ACATTCTGCTCTCCCTGGTGCGTGACGAGGAGCGCCGCGCTCGGGCTTTC
CATTGCTGTATCGTAGCTCCTCACCAGAATCATGACGGGCAACGGGCAAC
AGAGGCTGAGGCGGCGGCAGACTCGGCCATGTCATGACACCGTGGAAGTG
GATAAGAGCAAAATGAGGATGGGGCGGGTAATGGCCTATGTAAATTCAAT
TTTATAAATAGAAAATAGGACTGCTTGGAGAGTGGATGAAGTCCAAGAGC
TAAATAGACAGCCAGGGCACATCAAGCGGGCAATGGGGCAAATTTGCATC
ACATAGGAAAAATATAACCTGTTCGAAAGCAGACTGCAAGCTTGAGACAC
CAATTGGTTGTCCGTGTGCAGCAAGAGGGAGGTTTAGCAGCCAAGGGACT
TCAGCGTCGTCTTGGTGCGGAGGAAAACGGACAGAGAGAAGGGCAAAAGA
GACTGTGAGTTCTTTCATTTGTTTGCATGGGATCCGTGGTACCTTGTAAA
GCACGAGGAAGGGAACGTTTTCACTCGACGCACGGAATACCTACCACCGC
ATCAGGCGAATGCCCTGGCGCAGCTGTTTTGTTTGTACCGATGTGCGCCT
TTTATCTTTATCTGATGGAGGTTGAGGTAAGCAAGAAAGTTAAAAGCGAG
AGAGGGGATTCGCTACCCAAGCAATAAAATTTAATGGACGAATGCTCTGT
GTTTCTTAAACTTATGGAACGGTTGGGAAGAGAGTGTGTGTCCGCGCGAG
ACGACACACGTAAGGTTTTGGCGGGGTGATTAATAAATTTGATAGCGCTT
TCTTTCTTGGCGTGCGCCATCTTGTGCGACG

Coding sequence (CDS) from alignment at scaffold_11:459485..460715+

>mRNA_5740 ID=mRNA_5740|Name=jgi.p|Nanoce1779_2|590177|organism=Nannochloropsis oceanica|type=CDS|length=492bp|location=Sequence derived from alignment at scaffold_11:459485..460715+ (Nannochloropsis oceanica)
ATGAGCAGCGGAGGTGGAGGCAGAGGTATGTCGGCGGCAGGCGCAGCGCA
TCGGGAGATAGTCCTCGATTTCAGCGAGATCTTCCGGTCTTCGCACGTGC
CCATGGCCGTGGTCTCGATCGATGGACGTATCCTGCAGTGCAACGACGAA
TTTAGTCGCGTGACCGGATACACCAACAACAAGCTCACGGGCGTCACACT
TTTTAGCCTAGCCGCCCCCGAGTGCTTGGAGGAGCTCTTCAAATCCATCG
CCCGCCTCCTCTCAACGGCCGCCCTGGACGAGAATAACCCAGCCTATTTT
GCAACGGCCGCCGCGCGTGCCGCACCTCTCTCGCAGCGAGGCTACCAACA
TGCCAACATTCTGCTCTCCCTGGTGCGTGACGAGGAGCGCCGCGCTCGGG
CTTTCCATTGCTGTATCGTAGCTCCTCACCAGAATCATGACGGGCAACGG
GCAACAGAGGCTGAGGCGGCGGCAGACTCGGCCATGTCATGA

Synonyms

Publications