jgi.p|Nanoce1779_2|529423, mRNA_5467 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|529423
Unique NamemRNA_5467
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length672
Alignment locationscaffold_13:484333..485004 -

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Properties
Property NameValue
TranscriptId529509
TrackFilteredModels2
ProteinId529423
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:484333..485004 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|529423gene_5467Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5467CDS_5467Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|529423mRNA_5467-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5467 ID=mRNA_5467|Name=jgi.p|Nanoce1779_2|529423|organism=Nannochloropsis oceanica|type=mRNA|length=672bp
ATGGAGGGCTTCTCCTCGCACTCCGACGCCACCCTGAATCTCAACACCCT
CCTCTCAACCACCACCAGCCGCAGCAGCAGCAACAGCAGCAGCAGCAGCA
TCATAAGCCACCCGAAAGACCTCCTCCTCCGCGACCTTACTCGCTGCACC
ATCCATCTTCTTGCCCCCCTTCACTTCCTGCGGCTCGAGAACCTGATCGA
CTGCAAGCTTCTATGTGGCCCGGTTGTCGGTCCCGTGTATTTGGAGCAAT
GCCAAGGATGCACATTGTATCTCGCGAGTCGACAGCTACGGATCCACTGT
ACCTACGACACTACCTTGTATGTACATGTGACCTCTGGTCCAGTCATCGA
AGATTGTGATGGGCTGAAATTCGCGCCGTGGGCCTTGACTTACCCGGGAT
GGGAGGAGCAGCTTGTGGAGGCTGGGTTCAGGGCGAGGGGGAGGGAAGGG
GAGGGAGGGCAGGGGAATGCGTGGCAGGAGGTGAAGGACTTTAAGTGGCT
GAAGGTGCAACGGTCGCCGCATTGGTCTGTGGTGCCGGAGGAGGAAAGGG
TGATGGAAGAGGTGGTTGGAGGAGGGAGCAGTGATGGAGAAGGGGAAAGA
CAAAGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAAGGAAAGCTGCGATTGTAA
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protein sequence of jgi.p|Nanoce1779_2|529423

>mRNA_5467-protein ID=mRNA_5467-protein|Name=jgi.p|Nanoce1779_2|529423|organism=Nannochloropsis oceanica|type=polypeptide|length=224bp
MEGFSSHSDATLNLNTLLSTTTSRSSSNSSSSSIISHPKDLLLRDLTRCT
IHLLAPLHFLRLENLIDCKLLCGPVVGPVYLEQCQGCTLYLASRQLRIHC
TYDTTLYVHVTSGPVIEDCDGLKFAPWALTYPGWEEQLVEAGFRARGREG
EGGQGNAWQEVKDFKWLKVQRSPHWSVVPEEERVMEEVVGGGSSDGEGER
QREEEEEEEEEEEEEEEEGKLRL*
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mRNA from alignment at scaffold_13:484333..485004-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5467 ID=mRNA_5467|Name=jgi.p|Nanoce1779_2|529423|organism=Nannochloropsis oceanica|type=mRNA|length=672bp|location=Sequence derived from alignment at scaffold_13:484333..485004- (Nannochloropsis oceanica)
ATGGAGGGCTTCTCCTCGCACTCCGACGCCACCCTGAATCTCAACACCCT
CCTCTCAACCACCACCAGCCGCAGCAGCAGCAACAGCAGCAGCAGCAGCA
TCATAAGCCACCCGAAAGACCTCCTCCTCCGCGACCTTACTCGCTGCACC
ATCCATCTTCTTGCCCCCCTTCACTTCCTGCGGCTCGAGAACCTGATCGA
CTGCAAGCTTCTATGTGGCCCGGTTGTCGGTCCCGTGTATTTGGAGCAAT
GCCAAGGATGCACATTGTATCTCGCGAGTCGACAGCTACGGATCCACTGT
ACCTACGACACTACCTTGTATGTACATGTGACCTCTGGTCCAGTCATCGA
AGATTGTGATGGGCTGAAATTCGCGCCGTGGGCCTTGACTTACCCGGGAT
GGGAGGAGCAGCTTGTGGAGGCTGGGTTCAGGGCGAGGGGGAGGGAAGGG
GAGGGAGGGCAGGGGAATGCGTGGCAGGAGGTGAAGGACTTTAAGTGGCT
GAAGGTGCAACGGTCGCCGCATTGGTCTGTGGTGCCGGAGGAGGAAAGGG
TGATGGAAGAGGTGGTTGGAGGAGGGAGCAGTGATGGAGAAGGGGAAAGA
CAAAGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAAGGAAAGCTGCGATTGTAA
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Coding sequence (CDS) from alignment at scaffold_13:484333..485004-

>mRNA_5467 ID=mRNA_5467|Name=jgi.p|Nanoce1779_2|529423|organism=Nannochloropsis oceanica|type=CDS|length=672bp|location=Sequence derived from alignment at scaffold_13:484333..485004- (Nannochloropsis oceanica)
ATGGAGGGCTTCTCCTCGCACTCCGACGCCACCCTGAATCTCAACACCCT
CCTCTCAACCACCACCAGCCGCAGCAGCAGCAACAGCAGCAGCAGCAGCA
TCATAAGCCACCCGAAAGACCTCCTCCTCCGCGACCTTACTCGCTGCACC
ATCCATCTTCTTGCCCCCCTTCACTTCCTGCGGCTCGAGAACCTGATCGA
CTGCAAGCTTCTATGTGGCCCGGTTGTCGGTCCCGTGTATTTGGAGCAAT
GCCAAGGATGCACATTGTATCTCGCGAGTCGACAGCTACGGATCCACTGT
ACCTACGACACTACCTTGTATGTACATGTGACCTCTGGTCCAGTCATCGA
AGATTGTGATGGGCTGAAATTCGCGCCGTGGGCCTTGACTTACCCGGGAT
GGGAGGAGCAGCTTGTGGAGGCTGGGTTCAGGGCGAGGGGGAGGGAAGGG
GAGGGAGGGCAGGGGAATGCGTGGCAGGAGGTGAAGGACTTTAAGTGGCT
GAAGGTGCAACGGTCGCCGCATTGGTCTGTGGTGCCGGAGGAGGAAAGGG
TGATGGAAGAGGTGGTTGGAGGAGGGAGCAGTGATGGAGAAGGGGAAAGA
CAAAGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAAGGAAAGCTGCGATTGTAA
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Synonyms
Publications