jgi.p|Nanoce1779_2|592306, mRNA_5374 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|592306
Unique NamemRNA_5374
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1987
Alignment locationscaffold_13:280157..282143 -

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Properties
Property NameValue
TranscriptId592392
TrackFilteredModels2
ProteinId592306
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:280157..282143 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592306gene_5374Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592306mRNA_5374-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5374CDS_5374Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5374 ID=mRNA_5374|Name=jgi.p|Nanoce1779_2|592306|organism=Nannochloropsis oceanica|type=mRNA|length=1987bp
ACAGTAGCACAGGCACATGCAAGAATTCGTGGTCGAGGCACCTCCGGCAC
GTATTTTCTTTGGACCGGGATGCATTAAATGTGTTGGAGCGACAGAGATT
CGGAAGTTGGGCCTTCACCGCTTGCTTGTCCTTGGATCTCATCGTGCGTT
GACTGGTACCCCTGCTCTGGTTGAGCTGCAGGCCGCGATCAAGGATCTTG
TGGTAGGGGTGATTCAAGATGTTGAGTGGTATAATTCACCGGAAGCGCTT
GTGGACAAAGCCAATGAGGTGTCGAGTGTGGATGCTGATGGGTTGCTCGT
GATTGGAGGTGGGTCGCCTCTTGGGTTGGCCAAGGCACTGGCCCAGCTCA
TGTCCCAGTTTTCACCATCGCGATTGGCTATCGTCAGCATTCCAACAACT
TATTCGGGTAGTGAGGTGACTGCATATCATGGTATACATCTAAGTGCTGA
CGGCATGCCCCAGAAGTTCGCCATCCGCAACCGTGTGGTCCGCCCTCTCC
TCGTCTTGTATGACGCCCAGCTCCTCCTAGGGCTGCCCCGTGCGTTGGCC
ATCTCTTCCTCGTTCAACGCCCTTGCCCATGCCTTTGAGGCACTGTGGGT
GAGTCGCACGCCCTCTCCGCAATCACAGCGGGCGGCCAAGATGAGTATTG
AAACTATTTTCAAGTATTTACCTGCCTTGGACACGACTGATCAAGAGAGC
GAGGAAGGCCTCGAGGTGGTTAACGAGCTACTACATGCTGCCTATCTGGG
TGCCCATAGCTTGGACACGGAGGACCTTGGGCTGCAACATCAACTCGCAC
ACGTCTTGATAGGGACGTACAACTTGCCTCACGCAGAGGCTCATATGCTG
CTTTTACCGCATGTCATTCACTTCTACGAAGAAACTTGGGCCGGTGCTGG
CAAGAATACTACCCCCCTGACCGACATTCAGTTACCTTTGACGTCGTCTC
CTATGCTAGGGATGGCCTGCCATGTCTTCGATTTTCAACGGACGCTGTTA
CGTTCTCAGCCGCCTTTGAACCTCAAGGACCTGGGTTTGCAAGAGTCAGA
TTTGGAAGGCGTGATAGACACGCTGATAGAGTACGATGGCCTGTCCAAGG
ATCCAGAATTTCCCTGGGCCAAACCAGCGCTTCTTATCTTGCTGCAGCAC
GCTTGGGCGGGTGACCGACCATTGTTGGAGCGTCATGCGCAAAGCCCTCA
AGTCTCATCTGTGCCCAAGGTGCCGCGCGTATCTTATCTGTCCAACGACG
ATTTCCGTGGCCAGGACCCCGAGGCAGCTGCCAAGATTGTGGCACGGCGC
CAAGGGAATCTTTTGAATTTGGATCGCGTCTTGATGCATGCTCCCGCAGT
GGCTCAAGGCTGGAATGCCATGTTTGGCAGTTTGCGGTCAGGTCTCCAAC
TTATAGATGGACGCCTAAGGGAGCTGGTCATTTTGCGTGTTGCTGTCTTG
AATCGAGCTTATTATGAGTACTTTCAGCATTATCCTGTTCTTTTAGCCGA
AGGTGGGACAGTCGCGGAGGCCGAAGCTTTGGGTGATTGGCAAGGAGAAG
CGGCAAGGGGAATTTTTGGGGATCGGGACAAGGCAGTGTTAGCGTATGTA
GACGAGATGACGCGACATGTACAGGTGCAGCAGGCGACGGCGGAAACCTT
GCGTGCCGTGTTGCCAGTGGGAAATTCAGAATCTTATATGGTGGAGTTGA
CGGCGTTGTGTGCAGGATACAACATGGTTTCTCGCTTTTTGGAAGCCTTG
CAGCTCACACCTGAGACAACAAACCTCGCGGAACTGCCGCACATGCCAGT
GGATGTGGGCGACAAGCGGTAGCAGTGTTGAAAGCAGGTTTGTCGAGGGA
AATGGCGACCAAAAATGGAGCGTGGATAATGAGTGAAGGAGATTATCGGA
TACAGATGGCTCGAAATTAAATTGATTCAGATTCCAGAAAGACAAAACCT
GCTACATTTCCGCAATGAACATGACATAAGATGAGAG
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protein sequence of jgi.p|Nanoce1779_2|592306

>mRNA_5374-protein ID=mRNA_5374-protein|Name=jgi.p|Nanoce1779_2|592306|organism=Nannochloropsis oceanica|type=polypeptide|length=602bp
MQEFVVEAPPARIFFGPGCIKCVGATEIRKLGLHRLLVLGSHRALTGTPA
LVELQAAIKDLVVGVIQDVEWYNSPEALVDKANEVSSVDADGLLVIGGGS
PLGLAKALAQLMSQFSPSRLAIVSIPTTYSGSEVTAYHGIHLSADGMPQK
FAIRNRVVRPLLVLYDAQLLLGLPRALAISSSFNALAHAFEALWVSRTPS
PQSQRAAKMSIETIFKYLPALDTTDQESEEGLEVVNELLHAAYLGAHSLD
TEDLGLQHQLAHVLIGTYNLPHAEAHMLLLPHVIHFYEETWAGAGKNTTP
LTDIQLPLTSSPMLGMACHVFDFQRTLLRSQPPLNLKDLGLQESDLEGVI
DTLIEYDGLSKDPEFPWAKPALLILLQHAWAGDRPLLERHAQSPQVSSVP
KVPRVSYLSNDDFRGQDPEAAAKIVARRQGNLLNLDRVLMHAPAVAQGWN
AMFGSLRSGLQLIDGRLRELVILRVAVLNRAYYEYFQHYPVLLAEGGTVA
EAEALGDWQGEAARGIFGDRDKAVLAYVDEMTRHVQVQQATAETLRAVLP
VGNSESYMVELTALCAGYNMVSRFLEALQLTPETTNLAELPHMPVDVGDK
R*
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mRNA from alignment at scaffold_13:280157..282143-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5374 ID=mRNA_5374|Name=jgi.p|Nanoce1779_2|592306|organism=Nannochloropsis oceanica|type=mRNA|length=1987bp|location=Sequence derived from alignment at scaffold_13:280157..282143- (Nannochloropsis oceanica)
ACAGTAGCACAGGCACATGCAAGAATTCGTGGTCGAGGCACCTCCGGCAC
GTATTTTCTTTGGACCGGGATGCATTAAATGTGTTGGAGCGACAGAGATT
CGGAAGTTGGGCCTTCACCGCTTGCTTGTCCTTGGATCTCATCGTGCGTT
GACTGGTACCCCTGCTCTGGTTGAGCTGCAGGCCGCGATCAAGGATCTTG
TGGTAGGGGTGATTCAAGATGTTGAGTGGTATAATTCACCGGAAGCGCTT
GTGGACAAAGCCAATGAGGTGTCGAGTGTGGATGCTGATGGGTTGCTCGT
GATTGGAGGTGGGTCGCCTCTTGGGTTGGCCAAGGCACTGGCCCAGCTCA
TGTCCCAGTTTTCACCATCGCGATTGGCTATCGTCAGCATTCCAACAACT
TATTCGGGTAGTGAGGTGACTGCATATCATGGTATACATCTAAGTGCTGA
CGGCATGCCCCAGAAGTTCGCCATCCGCAACCGTGTGGTCCGCCCTCTCC
TCGTCTTGTATGACGCCCAGCTCCTCCTAGGGCTGCCCCGTGCGTTGGCC
ATCTCTTCCTCGTTCAACGCCCTTGCCCATGCCTTTGAGGCACTGTGGGT
GAGTCGCACGCCCTCTCCGCAATCACAGCGGGCGGCCAAGATGAGTATTG
AAACTATTTTCAAGTATTTACCTGCCTTGGACACGACTGATCAAGAGAGC
GAGGAAGGCCTCGAGGTGGTTAACGAGCTACTACATGCTGCCTATCTGGG
TGCCCATAGCTTGGACACGGAGGACCTTGGGCTGCAACATCAACTCGCAC
ACGTCTTGATAGGGACGTACAACTTGCCTCACGCAGAGGCTCATATGCTG
CTTTTACCGCATGTCATTCACTTCTACGAAGAAACTTGGGCCGGTGCTGG
CAAGAATACTACCCCCCTGACCGACATTCAGTTACCTTTGACGTCGTCTC
CTATGCTAGGGATGGCCTGCCATGTCTTCGATTTTCAACGGACGCTGTTA
CGTTCTCAGCCGCCTTTGAACCTCAAGGACCTGGGTTTGCAAGAGTCAGA
TTTGGAAGGCGTGATAGACACGCTGATAGAGTACGATGGCCTGTCCAAGG
ATCCAGAATTTCCCTGGGCCAAACCAGCGCTTCTTATCTTGCTGCAGCAC
GCTTGGGCGGGTGACCGACCATTGTTGGAGCGTCATGCGCAAAGCCCTCA
AGTCTCATCTGTGCCCAAGGTGCCGCGCGTATCTTATCTGTCCAACGACG
ATTTCCGTGGCCAGGACCCCGAGGCAGCTGCCAAGATTGTGGCACGGCGC
CAAGGGAATCTTTTGAATTTGGATCGCGTCTTGATGCATGCTCCCGCAGT
GGCTCAAGGCTGGAATGCCATGTTTGGCAGTTTGCGGTCAGGTCTCCAAC
TTATAGATGGACGCCTAAGGGAGCTGGTCATTTTGCGTGTTGCTGTCTTG
AATCGAGCTTATTATGAGTACTTTCAGCATTATCCTGTTCTTTTAGCCGA
AGGTGGGACAGTCGCGGAGGCCGAAGCTTTGGGTGATTGGCAAGGAGAAG
CGGCAAGGGGAATTTTTGGGGATCGGGACAAGGCAGTGTTAGCGTATGTA
GACGAGATGACGCGACATGTACAGGTGCAGCAGGCGACGGCGGAAACCTT
GCGTGCCGTGTTGCCAGTGGGAAATTCAGAATCTTATATGGTGGAGTTGA
CGGCGTTGTGTGCAGGATACAACATGGTTTCTCGCTTTTTGGAAGCCTTG
CAGCTCACACCTGAGACAACAAACCTCGCGGAACTGCCGCACATGCCAGT
GGATGTGGGCGACAAGCGGTAGCAGTGTTGAAAGCAGGTTTGTCGAGGGA
AATGGCGACCAAAAATGGAGCGTGGATAATGAGTGAAGGAGATTATCGGA
TACAGATGGCTCGAAATTAAATTGATTCAGATTCCAGAAAGACAAAACCT
GCTACATTTCCGCAATGAACATGACATAAGATGAGAG
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Coding sequence (CDS) from alignment at scaffold_13:280157..282143-

>mRNA_5374 ID=mRNA_5374|Name=jgi.p|Nanoce1779_2|592306|organism=Nannochloropsis oceanica|type=CDS|length=1806bp|location=Sequence derived from alignment at scaffold_13:280157..282143- (Nannochloropsis oceanica)
ATGCAAGAATTCGTGGTCGAGGCACCTCCGGCACGTATTTTCTTTGGACC
GGGATGCATTAAATGTGTTGGAGCGACAGAGATTCGGAAGTTGGGCCTTC
ACCGCTTGCTTGTCCTTGGATCTCATCGTGCGTTGACTGGTACCCCTGCT
CTGGTTGAGCTGCAGGCCGCGATCAAGGATCTTGTGGTAGGGGTGATTCA
AGATGTTGAGTGGTATAATTCACCGGAAGCGCTTGTGGACAAAGCCAATG
AGGTGTCGAGTGTGGATGCTGATGGGTTGCTCGTGATTGGAGGTGGGTCG
CCTCTTGGGTTGGCCAAGGCACTGGCCCAGCTCATGTCCCAGTTTTCACC
ATCGCGATTGGCTATCGTCAGCATTCCAACAACTTATTCGGGTAGTGAGG
TGACTGCATATCATGGTATACATCTAAGTGCTGACGGCATGCCCCAGAAG
TTCGCCATCCGCAACCGTGTGGTCCGCCCTCTCCTCGTCTTGTATGACGC
CCAGCTCCTCCTAGGGCTGCCCCGTGCGTTGGCCATCTCTTCCTCGTTCA
ACGCCCTTGCCCATGCCTTTGAGGCACTGTGGGTGAGTCGCACGCCCTCT
CCGCAATCACAGCGGGCGGCCAAGATGAGTATTGAAACTATTTTCAAGTA
TTTACCTGCCTTGGACACGACTGATCAAGAGAGCGAGGAAGGCCTCGAGG
TGGTTAACGAGCTACTACATGCTGCCTATCTGGGTGCCCATAGCTTGGAC
ACGGAGGACCTTGGGCTGCAACATCAACTCGCACACGTCTTGATAGGGAC
GTACAACTTGCCTCACGCAGAGGCTCATATGCTGCTTTTACCGCATGTCA
TTCACTTCTACGAAGAAACTTGGGCCGGTGCTGGCAAGAATACTACCCCC
CTGACCGACATTCAGTTACCTTTGACGTCGTCTCCTATGCTAGGGATGGC
CTGCCATGTCTTCGATTTTCAACGGACGCTGTTACGTTCTCAGCCGCCTT
TGAACCTCAAGGACCTGGGTTTGCAAGAGTCAGATTTGGAAGGCGTGATA
GACACGCTGATAGAGTACGATGGCCTGTCCAAGGATCCAGAATTTCCCTG
GGCCAAACCAGCGCTTCTTATCTTGCTGCAGCACGCTTGGGCGGGTGACC
GACCATTGTTGGAGCGTCATGCGCAAAGCCCTCAAGTCTCATCTGTGCCC
AAGGTGCCGCGCGTATCTTATCTGTCCAACGACGATTTCCGTGGCCAGGA
CCCCGAGGCAGCTGCCAAGATTGTGGCACGGCGCCAAGGGAATCTTTTGA
ATTTGGATCGCGTCTTGATGCATGCTCCCGCAGTGGCTCAAGGCTGGAAT
GCCATGTTTGGCAGTTTGCGGTCAGGTCTCCAACTTATAGATGGACGCCT
AAGGGAGCTGGTCATTTTGCGTGTTGCTGTCTTGAATCGAGCTTATTATG
AGTACTTTCAGCATTATCCTGTTCTTTTAGCCGAAGGTGGGACAGTCGCG
GAGGCCGAAGCTTTGGGTGATTGGCAAGGAGAAGCGGCAAGGGGAATTTT
TGGGGATCGGGACAAGGCAGTGTTAGCGTATGTAGACGAGATGACGCGAC
ATGTACAGGTGCAGCAGGCGACGGCGGAAACCTTGCGTGCCGTGTTGCCA
GTGGGAAATTCAGAATCTTATATGGTGGAGTTGACGGCGTTGTGTGCAGG
ATACAACATGGTTTCTCGCTTTTTGGAAGCCTTGCAGCTCACACCTGAGA
CAACAAACCTCGCGGAACTGCCGCACATGCCAGTGGATGTGGGCGACAAG
CGGTAG
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Synonyms
Publications