Properties
| Property Name | Value |
|---|
| TranscriptId | 592129 |
| Track | FilteredModels2 |
| ProteinId | 592043 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_13 | supercontig | scaffold_13:96072..98555 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5295 ID=mRNA_5295|Name=jgi.p|Nanoce1779_2|592043|organism=Nannochloropsis oceanica|type=mRNA|length=1478bp
AGCACCCAGCTCAAGTTGCGAAGCTAAGAAGCTGGCAGCAAGCCCATCAA
CATGTCCAAGAACAACAAAAAGGTGGTACTGGTCACGGGAGGGACGGGCC
TGGTAGGCAAGGGAATCGAAGATTTCACCTCGACTGACCCCATCGCCACC
GAGACGGAGACATATATCTTCCTCAGCTCCAAGGATGGAGATTTGCGCGA
TAAGGCGCAGACGTATGCCATTTTTGAGAAGTACCGCCCGGCGATGGTCA
TTCACTTGGCGGCGTTGGTCGGGGGATTGTTTCGTAACATGAAGGAGAAG
GTGGAGTTTTACCGCGAGAATGTGTTGATCAACGATAACGTGATGGAGGC
CTGCAAGGATCATAAGGTGGAGAAACTGGTTTCGTGCTTGTCGACGTGTG
TGTTCCCCGATAAGACGACGTACCCGATCGATGAGAGCATGATTCATAAT
GGGCCGCCCCATGCCTCTAATGAGGGGTACGCGTATGCCAAACGCATGCT
CGACGTCATGTCTCGCTGCTACAAGGAAGAATACGGCTGCAACTTCACCT
CCATCATTCCTACAAACATCTATGGTCCCCATGATAACTTCAATGTCCAA
GACGGACACGTCATCCCCGGTCTTATTCACAAGTGCTACAACGCCGAGCA
GGCGGGCACAGATTTCACCATTTGGGGATCTGGCAAACCTCTGCGTCAGT
TCATTTACTCCCGGGATTTGGCAGAGTTGATCGTGTGGACCATGCGCGAG
TATCACTCCGCGGATCCCCTCATTCTCTCGGTCGGCGAGGAGGATGAGGT
GTCCATCGGGACCCTGGCTCAGACCGTGGCCAAGGCCATGGAGTTCAAGG
GCAAGGTGGTGTTCGACACCGACAAGGCCGATGGCCAGTACAAGAAGACT
GCCAGCAACGCCAAGCTCCGTTCCCTCCGTCCAGACTTCCGCTTCACGAC
CATAGAGGAGGGACTTGCCCAGACCTGTGCTTGGTTCAAGGAGAATTACG
CGACTGCCCGAAAGTAAAGCAGGGAAGTCAGGAGGATGAAGGTGGAAGAA
ACTTGGTGTACTTTCGTACGTATAGGGGAAGGAGGAAGGGAAAGAATGAC
AGAGCAAAAAAAAAGGAGAGAGGGAGAATTCATGTATTGGGCTGCGAGTG
TAGTGTCGAGCCCCGCGCGAGGCGAGGGAAAAAGAGATGGCAGTGAGAAT
GACCTCACAAGGAAAGGTCAAATCTAAATTGTAATTGAGTGGGAAACGAT
TCCGCGGAGCGATTATCAAAGCAAAAATCCAACACCGAGGTCCTTGTCGT
GTGGCAATGAGTAATTTGAAAGAAAGGCACAAGGAAGAAAATAACATGGC
GGGAGGAAGGATTAAATGCCTATCACTTCCCTTAGACTTTCCAGGCCAGA
CCTTTCTCCTCTGGCGAAGGGGGGGAAAAGATCACGAGAAAAATTCCCAC
TGATAAAGAACAAAATGAACGGTGCGCA back to topprotein sequence of jgi.p|Nanoce1779_2|592043 >mRNA_5295-protein ID=mRNA_5295-protein|Name=jgi.p|Nanoce1779_2|592043|organism=Nannochloropsis oceanica|type=polypeptide|length=322bp
MSKNNKKVVLVTGGTGLVGKGIEDFTSTDPIATETETYIFLSSKDGDLRD
KAQTYAIFEKYRPAMVIHLAALVGGLFRNMKEKVEFYRENVLINDNVMEA
CKDHKVEKLVSCLSTCVFPDKTTYPIDESMIHNGPPHASNEGYAYAKRML
DVMSRCYKEEYGCNFTSIIPTNIYGPHDNFNVQDGHVIPGLIHKCYNAEQ
AGTDFTIWGSGKPLRQFIYSRDLAELIVWTMREYHSADPLILSVGEEDEV
SIGTLAQTVAKAMEFKGKVVFDTDKADGQYKKTASNAKLRSLRPDFRFTT
IEEGLAQTCAWFKENYATARK* back to topmRNA from alignment at scaffold_13:96072..98555+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5295 ID=mRNA_5295|Name=jgi.p|Nanoce1779_2|592043|organism=Nannochloropsis oceanica|type=mRNA|length=2484bp|location=Sequence derived from alignment at scaffold_13:96072..98555+ (Nannochloropsis oceanica)
AGCACCCAGCTCAAGTTGCGAAGCTAAGAAGCTGGCAGCAAGCCCATCAA
CATGTCCAAGAACAACAAAAAGGTGGTACTGGTCACGGGAGGGACGGGCC
TGGTAGGCAAGGGAATCGAAGATTTCACCTCGACTGGTAAGTTGGGGACG
GAGTATATAAAGGGCGTCGAGAAAGCGTTGACGTGAATCTGGAGGAGTGG
TGGCGTCACCCCAAGCCTTAAAAAGCGCATGCAAATGAATCTAGCGGTAC
CACCTGAATCAAGTGATGGTTTTTGACTCCCTTCGCCTGTGGCCTATGTC
TCCTGCTTTTCCACACGATGCTTAACACGATTTCCTCCTTGCCTTCCTCC
CTCCCTCCCTTTCCTCTTTTCATTCCTCATTCGTAGACCCCATCGCCACC
GAGACGGAGACATATATCTTCCTCAGCTCCAAGGATGGAGATTTGCGCGA
TAAGGCGCAGACGTATGCCATTTTTGAGAAGTACCGCCCGGCGATGGTCA
TTCACTTGGCGGCGTTGGTCGGGGGATTGTTTCGTAACATGAAGGAGAAG
GTGGAGTTTTACCGCGAGAATGTGTTGATCAACGATAACGTGATGGAGGC
CTGCAAGGATCATAAGGTGGAGAAACTGGTTTCGTGCTTGTCGACGTGTG
TGTTCCCCGATAAGACGACGTACCCGATCGATGAGAGCATGATTCATAAT
GGGCCGCCCCATGCCTCTAATGAGGGTAAGCGAAGGAGGGAAGGAGCGAA
GAGGGGCAGGGAGAACTGATTCGAGGCGGCAACATTCTGTAAGCGTGGCA
ACCGTCCTGACATTTGATTTATCCTCCCTCCCTCCCTCCCTCTCTCCCTC
CTTATCAGGGTACGCGTATGCCAAACGCATGCTCGACGTCATGTCTCGCT
GCTACAAGGAAGAATACGGCTGCAACTTCACCTCCATCATTCCTACAAAC
ATCTATGGTCCCCATGATAACTTCAATGTCCAAGTACGAAATTGTCGTCC
CGTCCTCTTTTTCCTTCTCTCCATGCCGTCCTGCAGATTTTATCAAAATA
CTCGCTTGATGGAAGCGACTCACCCTCTTCTTCCCTCCGTCCCTCCCTCC
CTCCCTCCGTCCCTCCTTCCCTCCCCCCCTCCCATTAGGACGGACACGTC
ATCCCCGGTCTTATTCACAAGTGCTACAACGCCGAGCAGGCGGGCACAGA
TTTCACCATTTGGGGATCTGGCAAACCTCTGCGTCAGTTCATTTACTCCC
GGGATTTGGCAGAGTTGATCGTGTGGACCATGCGCGAGTATCACGTGAGT
GGGCGAGGGAGGGAGGGAGGGGGGGAGGGAGGAAGGGGGGGGGGGGGGTG
GGCGAGGTTTGAGAAGCGGCCGTGTCAGTCGATGCATGCATTGTCTCGTG
GAGGTTGGCCGAGTTGATGAAATGTGAACCATGCACGAGTGTGTGGGTGA
CAAAAATTAGAGTACCGTCTTGAGAAAGGAGCTCTCTGGAAAAGAAGGAT
GAATAAAGGAAAGGAAGGATAGTAGAATACACTATACCGCACACTCACAT
AGATGATTTCTTACATCAACTCGCCTCCTCCCTCCTTCCTCCTTTCCCTC
CTTCCTCCTTTCCCTCCTTCCTCCTTCCCCTCCTTCCCTTCCTAGTCCGC
GGATCCCCTCATTCTCTCGGTCGGCGAGGAGGATGAGGTGTCCATCGGGA
CCCTGGCTCAGACCGTGGCCAAGGCCATGGAGTTCAAGGGCAAGGTGGTG
GTAAGTCTTGAGAAAAGGATTGAAGGGAAAGGGAGAGTAATGGTATCGCG
TCGCTCTATCAAAAGCTATGACAACTTACTCACTTCGCTCTCTCCCTTCT
TCTCTCCGTATGTCTAGTTCGACACCGACAAGGCCGATGGCCAGTACAAG
AAGACTGCCAGCAACGCCAAGCTCCGTTCCCTCCGTCCAGACTTCCGCTT
CACGACCATAGAGGAGGGACTTGCCCAGACCTGTGCTTGGTTCAAGGAGA
ATTACGCGACTGCCCGAAAGTAAAGCAGGGAAGTCAGGAGGATGAAGGTG
GAAGAAACTTGGTGTACTTTCGTACGTATAGGGGAAGGAGGAAGGGAAAG
AATGACAGAGCAAAAAAAAAGGAGAGAGGGAGAATTCATGTATTGGGCTG
CGAGTGTAGTGTCGAGCCCCGCGCGAGGCGAGGGAAAAAGAGATGGCAGT
GAGAATGACCTCACAAGGAAAGGTCAAATCTAAATTGTAATTGAGTGGGA
AACGATTCCGCGGAGCGATTATCAAAGCAAAAATCCAACACCGAGGTCCT
TGTCGTGTGGCAATGAGTAATTTGAAAGAAAGGCACAAGGAAGAAAATAA
CATGGCGGGAGGAAGGATTAAATGCCTATCACTTCCCTTAGACTTTCCAG
GCCAGACCTTTCTCCTCTGGCGAAGGGGGGGAAAAGATCACGAGAAAAAT
TCCCACTGATAAAGAACAAAATGAACGGTGCGCA back to topCoding sequence (CDS) from alignment at scaffold_13:96072..98555+ >mRNA_5295 ID=mRNA_5295|Name=jgi.p|Nanoce1779_2|592043|organism=Nannochloropsis oceanica|type=CDS|length=5796bp|location=Sequence derived from alignment at scaffold_13:96072..98555+ (Nannochloropsis oceanica)
ATGTCCAAGAACAACAAAAAGGTGGTACTGGTCACGGGAGGGACGGGCCT
GGTAGGCAAGGGAATCGAAGATTTCACCTCGACTGACCCCATCGCCACCG
AGACGGAGACATATATCTTCCTCAGCTCCAAGGATGGAGATTTGCGCGAT
AAGGCGCAGACGTATGCCATTTTTGAGAAGTACCGCCCGGCGATGGTCAT
TCACTTGGCGGCGTTGGTCGGGGGATTGTTTCGTAACATGAAGGAGAAGG
TGGAGTTTTACCGCGAGAATGTGTTGATCAACGATAACGTGATGGAGGCC
TGCAAGGATCATAAGGTGGAGAAACTGGTTTCGTGCTTGTCGACGTGTGT
GTTCCCCGATAAGACGACGTACCCGATCGATGAGAGCATGATTCATAATG
GGCCGCCCCATGCCTCTAATGAGGGGTACGCGTATGCCAAACGCATGCTC
GACGTCATGTCTCGCTGCTACAAGGAAGAATACGGCTGCAACTTCACCTC
CATCATTCCTACAAACATCTATGGTCCCCATGATAACTTCAATGTCCAAG
ACGGACACGTCATCCCCGGTCTTATTCACAAGTGCTACAACGCCGAGCAG
GCGGGCACAGATTTCACCATTTGGGGATCTGGCAAACCTCTGCGTCAGTT
CATTTACTCCCGGGATTTGGCAGAGTTGATCGTGTGGACCATGCGCGAGT
ATCACTCCGCGGATCCCCTCATTCTCTCGGTCGGCGAGGAGGATGAGGTG
TCCATCGGGACCCTGGCTCAGACCGTGGCCAAGGCCATGGAGTTCAAGGG
CAAGGTGGTGTTCGACACCGACAAGGCCGATGGCCAGTACAAGAAGACTG
CCAGCAACGCCAAGCTCCGTTCCCTCCGTCCAGACTTCCGCTTCACGACC
ATAGAGGAGGGACTTGCCCAGACCTGTGCTTGGTTCAAGGAGAATTACGC
GACTGCCCGAAAGTAAATGTCCAAGAACAACAAAAAGGTGGTACTGGTCA
CGGGAGGGACGGGCCTGGTAGGCAAGGGAATCGAAGATTTCACCTCGACT
GACCCCATCGCCACCGAGACGGAGACATATATCTTCCTCAGCTCCAAGGA
TGGAGATTTGCGCGATAAGGCGCAGACGTATGCCATTTTTGAGAAGTACC
GCCCGGCGATGGTCATTCACTTGGCGGCGTTGGTCGGGGGATTGTTTCGT
AACATGAAGGAGAAGGTGGAGTTTTACCGCGAGAATGTGTTGATCAACGA
TAACGTGATGGAGGCCTGCAAGGATCATAAGGTGGAGAAACTGGTTTCGT
GCTTGTCGACGTGTGTGTTCCCCGATAAGACGACGTACCCGATCGATGAG
AGCATGATTCATAATGGGCCGCCCCATGCCTCTAATGAGGGGTACGCGTA
TGCCAAACGCATGCTCGACGTCATGTCTCGCTGCTACAAGGAAGAATACG
GCTGCAACTTCACCTCCATCATTCCTACAAACATCTATGGTCCCCATGAT
AACTTCAATGTCCAAGACGGACACGTCATCCCCGGTCTTATTCACAAGTG
CTACAACGCCGAGCAGGCGGGCACAGATTTCACCATTTGGGGATCTGGCA
AACCTCTGCGTCAGTTCATTTACTCCCGGGATTTGGCAGAGTTGATCGTG
TGGACCATGCGCGAGTATCACTCCGCGGATCCCCTCATTCTCTCGGTCGG
CGAGGAGGATGAGGTGTCCATCGGGACCCTGGCTCAGACCGTGGCCAAGG
CCATGGAGTTCAAGGGCAAGGTGGTGTTCGACACCGACAAGGCCGATGGC
CAGTACAAGAAGACTGCCAGCAACGCCAAGCTCCGTTCCCTCCGTCCAGA
CTTCCGCTTCACGACCATAGAGGAGGGACTTGCCCAGACCTGTGCTTGGT
TCAAGGAGAATTACGCGACTGCCCGAAAGTAAATGTCCAAGAACAACAAA
AAGGTGGTACTGGTCACGGGAGGGACGGGCCTGGTAGGCAAGGGAATCGA
AGATTTCACCTCGACTGACCCCATCGCCACCGAGACGGAGACATATATCT
TCCTCAGCTCCAAGGATGGAGATTTGCGCGATAAGGCGCAGACGTATGCC
ATTTTTGAGAAGTACCGCCCGGCGATGGTCATTCACTTGGCGGCGTTGGT
CGGGGGATTGTTTCGTAACATGAAGGAGAAGGTGGAGTTTTACCGCGAGA
ATGTGTTGATCAACGATAACGTGATGGAGGCCTGCAAGGATCATAAGGTG
GAGAAACTGGTTTCGTGCTTGTCGACGTGTGTGTTCCCCGATAAGACGAC
GTACCCGATCGATGAGAGCATGATTCATAATGGGCCGCCCCATGCCTCTA
ATGAGGGGTACGCGTATGCCAAACGCATGCTCGACGTCATGTCTCGCTGC
TACAAGGAAGAATACGGCTGCAACTTCACCTCCATCATTCCTACAAACAT
CTATGGTCCCCATGATAACTTCAATGTCCAAGACGGACACGTCATCCCCG
GTCTTATTCACAAGTGCTACAACGCCGAGCAGGCGGGCACAGATTTCACC
ATTTGGGGATCTGGCAAACCTCTGCGTCAGTTCATTTACTCCCGGGATTT
GGCAGAGTTGATCGTGTGGACCATGCGCGAGTATCACTCCGCGGATCCCC
TCATTCTCTCGGTCGGCGAGGAGGATGAGGTGTCCATCGGGACCCTGGCT
CAGACCGTGGCCAAGGCCATGGAGTTCAAGGGCAAGGTGGTGTTCGACAC
CGACAAGGCCGATGGCCAGTACAAGAAGACTGCCAGCAACGCCAAGCTCC
GTTCCCTCCGTCCAGACTTCCGCTTCACGACCATAGAGGAGGGACTTGCC
CAGACCTGTGCTTGGTTCAAGGAGAATTACGCGACTGCCCGAAAGTAAAT
GTCCAAGAACAACAAAAAGGTGGTACTGGTCACGGGAGGGACGGGCCTGG
TAGGCAAGGGAATCGAAGATTTCACCTCGACTGACCCCATCGCCACCGAG
ACGGAGACATATATCTTCCTCAGCTCCAAGGATGGAGATTTGCGCGATAA
GGCGCAGACGTATGCCATTTTTGAGAAGTACCGCCCGGCGATGGTCATTC
ACTTGGCGGCGTTGGTCGGGGGATTGTTTCGTAACATGAAGGAGAAGGTG
GAGTTTTACCGCGAGAATGTGTTGATCAACGATAACGTGATGGAGGCCTG
CAAGGATCATAAGGTGGAGAAACTGGTTTCGTGCTTGTCGACGTGTGTGT
TCCCCGATAAGACGACGTACCCGATCGATGAGAGCATGATTCATAATGGG
CCGCCCCATGCCTCTAATGAGGGGTACGCGTATGCCAAACGCATGCTCGA
CGTCATGTCTCGCTGCTACAAGGAAGAATACGGCTGCAACTTCACCTCCA
TCATTCCTACAAACATCTATGGTCCCCATGATAACTTCAATGTCCAAGAC
GGACACGTCATCCCCGGTCTTATTCACAAGTGCTACAACGCCGAGCAGGC
GGGCACAGATTTCACCATTTGGGGATCTGGCAAACCTCTGCGTCAGTTCA
TTTACTCCCGGGATTTGGCAGAGTTGATCGTGTGGACCATGCGCGAGTAT
CACTCCGCGGATCCCCTCATTCTCTCGGTCGGCGAGGAGGATGAGGTGTC
CATCGGGACCCTGGCTCAGACCGTGGCCAAGGCCATGGAGTTCAAGGGCA
AGGTGGTGTTCGACACCGACAAGGCCGATGGCCAGTACAAGAAGACTGCC
AGCAACGCCAAGCTCCGTTCCCTCCGTCCAGACTTCCGCTTCACGACCAT
AGAGGAGGGACTTGCCCAGACCTGTGCTTGGTTCAAGGAGAATTACGCGA
CTGCCCGAAAGTAAATGTCCAAGAACAACAAAAAGGTGGTACTGGTCACG
GGAGGGACGGGCCTGGTAGGCAAGGGAATCGAAGATTTCACCTCGACTGA
CCCCATCGCCACCGAGACGGAGACATATATCTTCCTCAGCTCCAAGGATG
GAGATTTGCGCGATAAGGCGCAGACGTATGCCATTTTTGAGAAGTACCGC
CCGGCGATGGTCATTCACTTGGCGGCGTTGGTCGGGGGATTGTTTCGTAA
CATGAAGGAGAAGGTGGAGTTTTACCGCGAGAATGTGTTGATCAACGATA
ACGTGATGGAGGCCTGCAAGGATCATAAGGTGGAGAAACTGGTTTCGTGC
TTGTCGACGTGTGTGTTCCCCGATAAGACGACGTACCCGATCGATGAGAG
CATGATTCATAATGGGCCGCCCCATGCCTCTAATGAGGGGTACGCGTATG
CCAAACGCATGCTCGACGTCATGTCTCGCTGCTACAAGGAAGAATACGGC
TGCAACTTCACCTCCATCATTCCTACAAACATCTATGGTCCCCATGATAA
CTTCAATGTCCAAGACGGACACGTCATCCCCGGTCTTATTCACAAGTGCT
ACAACGCCGAGCAGGCGGGCACAGATTTCACCATTTGGGGATCTGGCAAA
CCTCTGCGTCAGTTCATTTACTCCCGGGATTTGGCAGAGTTGATCGTGTG
GACCATGCGCGAGTATCACTCCGCGGATCCCCTCATTCTCTCGGTCGGCG
AGGAGGATGAGGTGTCCATCGGGACCCTGGCTCAGACCGTGGCCAAGGCC
ATGGAGTTCAAGGGCAAGGTGGTGTTCGACACCGACAAGGCCGATGGCCA
GTACAAGAAGACTGCCAGCAACGCCAAGCTCCGTTCCCTCCGTCCAGACT
TCCGCTTCACGACCATAGAGGAGGGACTTGCCCAGACCTGTGCTTGGTTC
AAGGAGAATTACGCGACTGCCCGAAAGTAAATGTCCAAGAACAACAAAAA
GGTGGTACTGGTCACGGGAGGGACGGGCCTGGTAGGCAAGGGAATCGAAG
ATTTCACCTCGACTGACCCCATCGCCACCGAGACGGAGACATATATCTTC
CTCAGCTCCAAGGATGGAGATTTGCGCGATAAGGCGCAGACGTATGCCAT
TTTTGAGAAGTACCGCCCGGCGATGGTCATTCACTTGGCGGCGTTGGTCG
GGGGATTGTTTCGTAACATGAAGGAGAAGGTGGAGTTTTACCGCGAGAAT
GTGTTGATCAACGATAACGTGATGGAGGCCTGCAAGGATCATAAGGTGGA
GAAACTGGTTTCGTGCTTGTCGACGTGTGTGTTCCCCGATAAGACGACGT
ACCCGATCGATGAGAGCATGATTCATAATGGGCCGCCCCATGCCTCTAAT
GAGGGGTACGCGTATGCCAAACGCATGCTCGACGTCATGTCTCGCTGCTA
CAAGGAAGAATACGGCTGCAACTTCACCTCCATCATTCCTACAAACATCT
ATGGTCCCCATGATAACTTCAATGTCCAAGACGGACACGTCATCCCCGGT
CTTATTCACAAGTGCTACAACGCCGAGCAGGCGGGCACAGATTTCACCAT
TTGGGGATCTGGCAAACCTCTGCGTCAGTTCATTTACTCCCGGGATTTGG
CAGAGTTGATCGTGTGGACCATGCGCGAGTATCACTCCGCGGATCCCCTC
ATTCTCTCGGTCGGCGAGGAGGATGAGGTGTCCATCGGGACCCTGGCTCA
GACCGTGGCCAAGGCCATGGAGTTCAAGGGCAAGGTGGTGTTCGACACCG
ACAAGGCCGATGGCCAGTACAAGAAGACTGCCAGCAACGCCAAGCTCCGT
TCCCTCCGTCCAGACTTCCGCTTCACGACCATAGAGGAGGGACTTGCCCA
GACCTGTGCTTGGTTCAAGGAGAATTACGCGACTGCCCGAAAGTAA back to top
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