jgi.p|Nanoce1779_2|593618, mRNA_6057 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|593618
Unique Name	mRNA_6057
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1402
Alignment location	scaffold_14:428091..429492 +

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Properties


Property Name	Value
TranscriptId	593704
Track	FilteredModels2
ProteinId	593618

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_14	supercontig	scaffold_14:428091..429492 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593618	gene_6057	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593618	mRNA_6057-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6057	CDS_6057	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_14:428091..429492+
coding sequence from alignment at scaffold_14:428091..429492+

mRNA sequence

>mRNA_6057 ID=mRNA_6057|Name=jgi.p|Nanoce1779_2|593618|organism=Nannochloropsis oceanica|type=mRNA|length=1402bp
TACCTCCTCTCCCACAACCCTCTTTTCAACCTACAAGCAAAAATCTCTTA
TTAAGACCCTTCCACGCTCACGGAGGACGCTACGAAATGTCGTTATCGGT
GTCCACAAGGGATTAACAGTCCCTTTCACTGTGGCGAAGGGAGAAAACTC
AAAGAACTTTCATATTTTGCCCCAGCAACTGCTGCACGCAGCGCCTCATC
CACTGCCTCCATACCAGCGGCTCGTCTTTCTCATCCTAATGATCTGACAT
CTCCCATTCCAACCCTCTAGAACCATGACTTCGGCACCACCCACCAGCAA
ACCACCCCGCTTTGACCCCGCGAACTCCCTGTTCGACCTCAACACCTTTG
CCGGGCGCCTCAGTCACTTCCTCCGAGTCTTGAACCCCCGCACACTTTTC
ACCCCTTCGCAAGAATTACAACGATGCGATAGTATCATTCAGGACTGGCG
CAAGGGCATCCATCACGATGACCAAGAGCTATGGGACTGCAAAGCTACCC
TCGAAGCCTGCACCCACCCCGTGAGCAAGGAAGCCATTCCCGTGCCCTTC
CGGATGTCGGCCTTTACGCCCGGCAACGTCCCCATTGTGTTAATGATGAT
GAATGCCACATCTCCAGGAAGCGTTCTTTTTGTGCATTGGCTCAATCAAA
CTTATAATTCTGCCGTTAATTTCAGTAATCGCTCAGGGGGCGGGGAAGCA
GAAACCACGCAAGTACTTCAGTCCTACCTGTTGGCGGTTGTAACTTCCTG
CTCCCTAGCTTTGGGGCTCGGCAAGGTGGCCAAGCGAATCCCAGCAGCTT
CTCCTGCGCTCTTTTCATACATTGCGGTTTCGGCTGCTGGTATGAGCAAC
ATTATGTTTTCACGTCAAAATGAACTGAGGGAAGGGGCACCCATGAGCGA
CGCCACGGGCAAATATCACGGCCAATCCCTCATTGCAGGAAAGAGTGTCG
TGTTACAGACGGCTGTCTCTCGGGGGCTTATCTTCCCTTTGCCTGTCCTG
CTGTTGCCGCATGCCATAATGCAGGGCTTGGGCAAGCTAAGCCTTCTACC
CAAGAACCCCCGAATGCGTCTAGCTGTTGAAGTGGCTGCAATCACGGGGT
CATTGGCAGGGGCCCTGCCTGTGTGTATGGCCTTGTTTCCTCAAACTGCC
TCCTTCAAGGCGACGGAGCTCGAGCCTCATTTTCAGGGATTGAAAGATGG
CCAGGGTCGGTTTATTGCCACGTTTCAGACTAACAAGGGACTGTGAGGGA
GGGGTGTGTGTGTGTACAGCCATGTAAGGTAGCAAAGCTCTCAGTATGCT
GTCAAAAGCGGTTTTATGATAGCAAGAACGACACTAGTATGACGAGATAG
TGTGCTGTAACACTGCTTTTTCCTTCTCTCTCTCTCTCTCTCTCTCTCTC
TC

protein sequence of jgi.p|Nanoce1779_2|593618

>mRNA_6057-protein ID=mRNA_6057-protein|Name=jgi.p|Nanoce1779_2|593618|organism=Nannochloropsis oceanica|type=polypeptide|length=324bp
MTSAPPTSKPPRFDPANSLFDLNTFAGRLSHFLRVLNPRTLFTPSQELQR
CDSIIQDWRKGIHHDDQELWDCKATLEACTHPVSKEAIPVPFRMSAFTPG
NVPIVLMMMNATSPGSVLFVHWLNQTYNSAVNFSNRSGGGEAETTQVLQS
YLLAVVTSCSLALGLGKVAKRIPAASPALFSYIAVSAAGMSNIMFSRQNE
LREGAPMSDATGKYHGQSLIAGKSVVLQTAVSRGLIFPLPVLLLPHAIMQ
GLGKLSLLPKNPRMRLAVEVAAITGSLAGALPVCMALFPQTASFKATELE
PHFQGLKDGQGRFIATFQTNKGL*

mRNA from alignment at scaffold_14:428091..429492+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6057 ID=mRNA_6057|Name=jgi.p|Nanoce1779_2|593618|organism=Nannochloropsis oceanica|type=mRNA|length=1402bp|location=Sequence derived from alignment at scaffold_14:428091..429492+ (Nannochloropsis oceanica)
TACCTCCTCTCCCACAACCCTCTTTTCAACCTACAAGCAAAAATCTCTTA
TTAAGACCCTTCCACGCTCACGGAGGACGCTACGAAATGTCGTTATCGGT
GTCCACAAGGGATTAACAGTCCCTTTCACTGTGGCGAAGGGAGAAAACTC
AAAGAACTTTCATATTTTGCCCCAGCAACTGCTGCACGCAGCGCCTCATC
CACTGCCTCCATACCAGCGGCTCGTCTTTCTCATCCTAATGATCTGACAT
CTCCCATTCCAACCCTCTAGAACCATGACTTCGGCACCACCCACCAGCAA
ACCACCCCGCTTTGACCCCGCGAACTCCCTGTTCGACCTCAACACCTTTG
CCGGGCGCCTCAGTCACTTCCTCCGAGTCTTGAACCCCCGCACACTTTTC
ACCCCTTCGCAAGAATTACAACGATGCGATAGTATCATTCAGGACTGGCG
CAAGGGCATCCATCACGATGACCAAGAGCTATGGGACTGCAAAGCTACCC
TCGAAGCCTGCACCCACCCCGTGAGCAAGGAAGCCATTCCCGTGCCCTTC
CGGATGTCGGCCTTTACGCCCGGCAACGTCCCCATTGTGTTAATGATGAT
GAATGCCACATCTCCAGGAAGCGTTCTTTTTGTGCATTGGCTCAATCAAA
CTTATAATTCTGCCGTTAATTTCAGTAATCGCTCAGGGGGCGGGGAAGCA
GAAACCACGCAAGTACTTCAGTCCTACCTGTTGGCGGTTGTAACTTCCTG
CTCCCTAGCTTTGGGGCTCGGCAAGGTGGCCAAGCGAATCCCAGCAGCTT
CTCCTGCGCTCTTTTCATACATTGCGGTTTCGGCTGCTGGTATGAGCAAC
ATTATGTTTTCACGTCAAAATGAACTGAGGGAAGGGGCACCCATGAGCGA
CGCCACGGGCAAATATCACGGCCAATCCCTCATTGCAGGAAAGAGTGTCG
TGTTACAGACGGCTGTCTCTCGGGGGCTTATCTTCCCTTTGCCTGTCCTG
CTGTTGCCGCATGCCATAATGCAGGGCTTGGGCAAGCTAAGCCTTCTACC
CAAGAACCCCCGAATGCGTCTAGCTGTTGAAGTGGCTGCAATCACGGGGT
CATTGGCAGGGGCCCTGCCTGTGTGTATGGCCTTGTTTCCTCAAACTGCC
TCCTTCAAGGCGACGGAGCTCGAGCCTCATTTTCAGGGATTGAAAGATGG
CCAGGGTCGGTTTATTGCCACGTTTCAGACTAACAAGGGACTGTGAGGGA
GGGGTGTGTGTGTGTACAGCCATGTAAGGTAGCAAAGCTCTCAGTATGCT
GTCAAAAGCGGTTTTATGATAGCAAGAACGACACTAGTATGACGAGATAG
TGTGCTGTAACACTGCTTTTTCCTTCTCTCTCTCTCTCTCTCTCTCTCTC
TC

Coding sequence (CDS) from alignment at scaffold_14:428091..429492+

>mRNA_6057 ID=mRNA_6057|Name=jgi.p|Nanoce1779_2|593618|organism=Nannochloropsis oceanica|type=CDS|length=972bp|location=Sequence derived from alignment at scaffold_14:428091..429492+ (Nannochloropsis oceanica)
ATGACTTCGGCACCACCCACCAGCAAACCACCCCGCTTTGACCCCGCGAA
CTCCCTGTTCGACCTCAACACCTTTGCCGGGCGCCTCAGTCACTTCCTCC
GAGTCTTGAACCCCCGCACACTTTTCACCCCTTCGCAAGAATTACAACGA
TGCGATAGTATCATTCAGGACTGGCGCAAGGGCATCCATCACGATGACCA
AGAGCTATGGGACTGCAAAGCTACCCTCGAAGCCTGCACCCACCCCGTGA
GCAAGGAAGCCATTCCCGTGCCCTTCCGGATGTCGGCCTTTACGCCCGGC
AACGTCCCCATTGTGTTAATGATGATGAATGCCACATCTCCAGGAAGCGT
TCTTTTTGTGCATTGGCTCAATCAAACTTATAATTCTGCCGTTAATTTCA
GTAATCGCTCAGGGGGCGGGGAAGCAGAAACCACGCAAGTACTTCAGTCC
TACCTGTTGGCGGTTGTAACTTCCTGCTCCCTAGCTTTGGGGCTCGGCAA
GGTGGCCAAGCGAATCCCAGCAGCTTCTCCTGCGCTCTTTTCATACATTG
CGGTTTCGGCTGCTGGTATGAGCAACATTATGTTTTCACGTCAAAATGAA
CTGAGGGAAGGGGCACCCATGAGCGACGCCACGGGCAAATATCACGGCCA
ATCCCTCATTGCAGGAAAGAGTGTCGTGTTACAGACGGCTGTCTCTCGGG
GGCTTATCTTCCCTTTGCCTGTCCTGCTGTTGCCGCATGCCATAATGCAG
GGCTTGGGCAAGCTAAGCCTTCTACCCAAGAACCCCCGAATGCGTCTAGC
TGTTGAAGTGGCTGCAATCACGGGGTCATTGGCAGGGGCCCTGCCTGTGT
GTATGGCCTTGTTTCCTCAAACTGCCTCCTTCAAGGCGACGGAGCTCGAG
CCTCATTTTCAGGGATTGAAAGATGGCCAGGGTCGGTTTATTGCCACGTT
TCAGACTAACAAGGGACTGTGA

Synonyms

Publications