jgi.p|Nanoce1779_2|593992, mRNA_6165 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|593992
Unique NamemRNA_6165
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1303
Alignment locationscaffold_14:679216..680518 -

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Properties
Property NameValue
TranscriptId594078
TrackFilteredModels2
ProteinId593992
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:679216..680518 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593992gene_6165Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593992mRNA_6165-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6165CDS_6165Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6165 ID=mRNA_6165|Name=jgi.p|Nanoce1779_2|593992|organism=Nannochloropsis oceanica|type=mRNA|length=1303bp
AGGGGTACTGGCAGGATGGGGAGCGAGGTTTGTGGCGGCGGTGGTGTTTG
GTGTGTGCCAGGCGTTGCCCCTTCTGCACGTCATGCACGACTCATCCCAC
CTGGCGTTCGGGAACACGGAGAGGTGGTGGCAAATGGGGGGGAGGCTGGC
CATGGATTTCTTCGCGGGGGCGAACATGACGAGTTGGCACAATCAGCACG
TGATAGGGCATCACATTTATACGAATGTGTTCATGGCTGACCCGGACTTG
CCCGATAAGAGCGCTGGGGACCCGAGGCGGCTGGTTAAGAAGCAGGCATG
GGAGGGGATGTACAAGTGGCAGCACCTCTACTTGCCACCTTTGTACGGCA
TCCTGGGCATCAAGTTCCGGGTGCAAGACGTGATGGAGACGTACGGGAGC
GGGTCGAATGGGCCGGTGAGGGTTAACCCCTTGAGCCCCTGGCAGTGGGG
GGAGATGATCTTCACCAAGCTCTTCTGGTTCGGCTGGCGCGTGGTGTTCC
CGCTCATGTCGGCAAGCTTTCGGACGAGCATGGCCACGTTCTGGCCCTTG
TTCTTCGTGAGTGAGTTCATGACGGGATACTTCCTGGCGTTCAATTTCCA
GGTGTCACACGTCTCGTCCGAGTGCGATTATCCGCTGGGCGAGGCGCCGA
GGGAGGAAGCGGTAGAGGGCTCGGCAGGAGGGAAGGAAGGTATCAAGGAC
GAATGGGCCGTGAGCCAGGTGAAGAGTAGCGTGGACTACGCCCACAATAA
CGCTTTGACGACCTTCCTGTGCGGGGCTTTGAACTACCAGGTGACGCACC
ACCTGTTCCCCACTGTAAGTCAGTACCACTACCCCAAGATCGCGCCCATC
ATCCAGGAGGTATGCAAGGAGTTTAACGTCGACTACAAGGTCCTGCCCGA
TTTTGTGACGGCGTTCCATGCGCACATTGCGCATTTGAAGGCCTTGGGAG
AGAGGGGCGAGGCGGCGGAGGTGCACATGGGTTAGGAAGCTCTCTGACGG
CCTCGGTAGATGAGGGATTGAAGTCGAGAGCGGCATGGTTTCCGTGAAGG
GTTGATGGGGATTTGTGAAGAAATGACGATTGAGGGGAAAAAGTGGCGGG
GAAAGAAATAGAAGAGTGCAATAGAAGAGAGAGTGCATACGAGAAGACGA
GAGCGATGGCGTCGCGTTTGTGATTTGTCGCGTCCTTGAGGATGTTTCAG
GAAGTTATCTTGTGTGTTTCACCGTTTTATTATTATGCTGACAATATATG
ATAGTGCGAAAGAGTAAGGCCGACCAAAAGAAGCAACATTTATGAGAAAT
TAA
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protein sequence of jgi.p|Nanoce1779_2|593992

>mRNA_6165-protein ID=mRNA_6165-protein|Name=jgi.p|Nanoce1779_2|593992|organism=Nannochloropsis oceanica|type=polypeptide|length=301bp
MHDSSHLAFGNTERWWQMGGRLAMDFFAGANMTSWHNQHVIGHHIYTNVF
MADPDLPDKSAGDPRRLVKKQAWEGMYKWQHLYLPPLYGILGIKFRVQDV
METYGSGSNGPVRVNPLSPWQWGEMIFTKLFWFGWRVVFPLMSASFRTSM
ATFWPLFFVSEFMTGYFLAFNFQVSHVSSECDYPLGEAPREEAVEGSAGG
KEGIKDEWAVSQVKSSVDYAHNNALTTFLCGALNYQVTHHLFPTVSQYHY
PKIAPIIQEVCKEFNVDYKVLPDFVTAFHAHIAHLKALGERGEAAEVHMG
*
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mRNA from alignment at scaffold_14:679216..680518-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6165 ID=mRNA_6165|Name=jgi.p|Nanoce1779_2|593992|organism=Nannochloropsis oceanica|type=mRNA|length=1303bp|location=Sequence derived from alignment at scaffold_14:679216..680518- (Nannochloropsis oceanica)
AGGGGTACTGGCAGGATGGGGAGCGAGGTTTGTGGCGGCGGTGGTGTTTG
GTGTGTGCCAGGCGTTGCCCCTTCTGCACGTCATGCACGACTCATCCCAC
CTGGCGTTCGGGAACACGGAGAGGTGGTGGCAAATGGGGGGGAGGCTGGC
CATGGATTTCTTCGCGGGGGCGAACATGACGAGTTGGCACAATCAGCACG
TGATAGGGCATCACATTTATACGAATGTGTTCATGGCTGACCCGGACTTG
CCCGATAAGAGCGCTGGGGACCCGAGGCGGCTGGTTAAGAAGCAGGCATG
GGAGGGGATGTACAAGTGGCAGCACCTCTACTTGCCACCTTTGTACGGCA
TCCTGGGCATCAAGTTCCGGGTGCAAGACGTGATGGAGACGTACGGGAGC
GGGTCGAATGGGCCGGTGAGGGTTAACCCCTTGAGCCCCTGGCAGTGGGG
GGAGATGATCTTCACCAAGCTCTTCTGGTTCGGCTGGCGCGTGGTGTTCC
CGCTCATGTCGGCAAGCTTTCGGACGAGCATGGCCACGTTCTGGCCCTTG
TTCTTCGTGAGTGAGTTCATGACGGGATACTTCCTGGCGTTCAATTTCCA
GGTGTCACACGTCTCGTCCGAGTGCGATTATCCGCTGGGCGAGGCGCCGA
GGGAGGAAGCGGTAGAGGGCTCGGCAGGAGGGAAGGAAGGTATCAAGGAC
GAATGGGCCGTGAGCCAGGTGAAGAGTAGCGTGGACTACGCCCACAATAA
CGCTTTGACGACCTTCCTGTGCGGGGCTTTGAACTACCAGGTGACGCACC
ACCTGTTCCCCACTGTAAGTCAGTACCACTACCCCAAGATCGCGCCCATC
ATCCAGGAGGTATGCAAGGAGTTTAACGTCGACTACAAGGTCCTGCCCGA
TTTTGTGACGGCGTTCCATGCGCACATTGCGCATTTGAAGGCCTTGGGAG
AGAGGGGCGAGGCGGCGGAGGTGCACATGGGTTAGGAAGCTCTCTGACGG
CCTCGGTAGATGAGGGATTGAAGTCGAGAGCGGCATGGTTTCCGTGAAGG
GTTGATGGGGATTTGTGAAGAAATGACGATTGAGGGGAAAAAGTGGCGGG
GAAAGAAATAGAAGAGTGCAATAGAAGAGAGAGTGCATACGAGAAGACGA
GAGCGATGGCGTCGCGTTTGTGATTTGTCGCGTCCTTGAGGATGTTTCAG
GAAGTTATCTTGTGTGTTTCACCGTTTTATTATTATGCTGACAATATATG
ATAGTGCGAAAGAGTAAGGCCGACCAAAAGAAGCAACATTTATGAGAAAT
TAA
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Coding sequence (CDS) from alignment at scaffold_14:679216..680518-

>mRNA_6165 ID=mRNA_6165|Name=jgi.p|Nanoce1779_2|593992|organism=Nannochloropsis oceanica|type=CDS|length=903bp|location=Sequence derived from alignment at scaffold_14:679216..680518- (Nannochloropsis oceanica)
ATGCACGACTCATCCCACCTGGCGTTCGGGAACACGGAGAGGTGGTGGCA
AATGGGGGGGAGGCTGGCCATGGATTTCTTCGCGGGGGCGAACATGACGA
GTTGGCACAATCAGCACGTGATAGGGCATCACATTTATACGAATGTGTTC
ATGGCTGACCCGGACTTGCCCGATAAGAGCGCTGGGGACCCGAGGCGGCT
GGTTAAGAAGCAGGCATGGGAGGGGATGTACAAGTGGCAGCACCTCTACT
TGCCACCTTTGTACGGCATCCTGGGCATCAAGTTCCGGGTGCAAGACGTG
ATGGAGACGTACGGGAGCGGGTCGAATGGGCCGGTGAGGGTTAACCCCTT
GAGCCCCTGGCAGTGGGGGGAGATGATCTTCACCAAGCTCTTCTGGTTCG
GCTGGCGCGTGGTGTTCCCGCTCATGTCGGCAAGCTTTCGGACGAGCATG
GCCACGTTCTGGCCCTTGTTCTTCGTGAGTGAGTTCATGACGGGATACTT
CCTGGCGTTCAATTTCCAGGTGTCACACGTCTCGTCCGAGTGCGATTATC
CGCTGGGCGAGGCGCCGAGGGAGGAAGCGGTAGAGGGCTCGGCAGGAGGG
AAGGAAGGTATCAAGGACGAATGGGCCGTGAGCCAGGTGAAGAGTAGCGT
GGACTACGCCCACAATAACGCTTTGACGACCTTCCTGTGCGGGGCTTTGA
ACTACCAGGTGACGCACCACCTGTTCCCCACTGTAAGTCAGTACCACTAC
CCCAAGATCGCGCCCATCATCCAGGAGGTATGCAAGGAGTTTAACGTCGA
CTACAAGGTCCTGCCCGATTTTGTGACGGCGTTCCATGCGCACATTGCGC
ATTTGAAGGCCTTGGGAGAGAGGGGCGAGGCGGCGGAGGTGCACATGGGT
TAG
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Synonyms
Publications