jgi.p|Nanoce1779_2|100200, mRNA_7026 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|100200
Unique NamemRNA_7026
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1158
Alignment locationscaffold_16:84943..86480 +

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Properties
Property NameValue
TranscriptId100286
TrackFilteredModels2
ProteinId100200
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:84943..86480 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|100200gene_7026Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|100200mRNA_7026-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7026CDS_7026Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7026 ID=mRNA_7026|Name=jgi.p|Nanoce1779_2|100200|organism=Nannochloropsis oceanica|type=mRNA|length=1158bp
ATCCATCACCATTTTTCACAACCAGGTGGTGCGGGGGCCGCAGCAGTGAT
GACCACGACGCTCACCTCGCCCTTGGGGGCGCTCCTTAAAGGCCGACGCC
ATCCTTTTCACCACAGTCAGAAAGAGGAAGACATCCATTATGCCATCACG
GTACGTCGACGGATCACGTGAGGATGGAGGCATGTGTAGACCCAAGGGAG
AGGGAGGGGAGGGAGGAAAAGCGCAAGAGTCGAGAACGCGCGGCAAGGGC
GCGGAAAAGAGTAAGACGGGATGCCATTTGTTGCTTGCATGTTTGTTCAT
CTCTGCATCTGGATTGTGTCACTGTTGGGCATGATGAGTGCGGCGTTGTG
TTGCTCGACATTCCATGCCTCACGGCGAAGGGCAGGAGCCTTCCACGGAG
GGAGAGGAAGAAGAGGAAGAGGAGGAAGGTACCTTCGACTTCGACGACCT
CCCTTCCCACGACTATCACGGACAACCTCAGCACCTTCCTGCTGCTGCAT
CAACATCGTCATCGCAACCTCATGCTATCAGTGCTGCCGGATACCTTCCG
AACGCCTCTTCCGCCACCGAAGCCGGAGTCGGAGCTGGAGCTGGAGCAGG
ATGCGTTTACCCACACCAGCATCAGTATTACCCGCAGCAGCAGCATGCCA
TGATGGTAGCGGTACAACAGCAACGGCAACAGCAGCAACAGCAGCAGCAG
CAGTTCTTCTACTACCACCAACAAGTCCTCGCTCAGAGGCAGGCGCACGC
CCGTCACCAACAGCATCTGCAGCGGCAACTCCACGCACGGCAGCAATGCC
TTTCCATGCCGTCCTCCCTTGCTTCCTCCTCCTCCCCTACCCCTTCCTCG
TTCCCTACGAAGGCATCCGACTACCACTATGTCCAGCAGCAGCAGCAGCA
GCAGCAGCAACCACGCCGATGGTTGAGTCGTGCGGCTGCTCCTGAGGATG
ACGAGGAGGAAGAGGAGGAATGGAGAGAGGAAGAGGAGGACGACCAGATG
ATGTTCCGCGACACGATGTGTCATCATCAGCAGCAGCAGGTTTTCGGTTC
CATGGACGGAGTGTGCTCGTCGGGGAAAGGAGGGAAGGAGGAGGAGGAGG
AGGAAGATGAGGATGTGGAGTCAATGATGCAATCCGACCCCGAGGAGATC
CAGGCCGC
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protein sequence of jgi.p|Nanoce1779_2|100200

>mRNA_7026-protein ID=mRNA_7026-protein|Name=jgi.p|Nanoce1779_2|100200|organism=Nannochloropsis oceanica|type=polypeptide|length=225bp
MPFVACMFVHLCIWIVSLLGMMSAALCCSTFHASRRRAGAFHGGRGRRGR
GGRYLRLRRPPFPRLSRTTSAPSCCCINIVIATSCYQCCRIPSERLFRHR
SRSRSWSWSRMRLPTPASVLPAAAACHDGSGTTATATAATAAAAVLLLPP
TSPRSEAGARPSPTASAAATPRTAAMPFHAVLPCFLLLPYPFLVPYEGIR
LPLCPAAAAAAAATTPMVESCGCS*
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mRNA from alignment at scaffold_16:84943..86480+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7026 ID=mRNA_7026|Name=jgi.p|Nanoce1779_2|100200|organism=Nannochloropsis oceanica|type=mRNA|length=1538bp|location=Sequence derived from alignment at scaffold_16:84943..86480+ (Nannochloropsis oceanica)
ATCCATCACCATTTTTCACAACCAGGTGGTGCGGGGGCCGCAGCAGTGAT
GACCACGACGCTCACCTCGCCCTTGGGGGCGCTCCTTAAAGGCCGACGCC
ATCCTTTTCACCACAGTCAGAAAGAGGAAGACATCCATTATGCCATCACG
GTACGTCGACGGATCACGTGAGGATGGAGGCATGTGTAGACCCAAGGGAG
AGGGAGGGGAGGGAGGAAAAGCGCAAGAGTCGAGAACGCGCGGCAAGGGC
GCGGAAAAGAGTAAGACGGGATGCCATTTGTTGCTTGCATGTTTGTTCAT
CTCTGCATCTGGATTGTGTCACTGTTGGGCATGATGAGTGCGGCGTTGTG
TTGCTCGACATTCCATGCCTCACGGCGAAGGGCAGGTAAGGGGGGGGGAG
TGGTGGAGGAGGGGAAGGGAGGGAAGGTGGGATGTGTTCGAAGAAGCAAC
CAGGCACCTTGCTACTGTTCTACAGGAGCAGAAATGTAAGTGCTCGGTCA
GTTACCCTATAGTATGGTTCGTGAAATACATGAGGAGGGAGGGAAGAAAA
GGGCAAGAAAGACGAGTGTGTGTAGCTGTCACGATGATATAGCCCGCCAA
GTCTGAAAATTTCAAGGCCTTTGCAGGTACATTACTCCCCCTCCCCCCCT
CCTTCTTCCCTCGGCATGTCTTCTTTCCTCCACTCACTCTCGTCATCCTA
GCACTCGGCGTTTCGTTTACTCACTGATCTCTCCTCATGTTGCTTCCCTA
TTCCGACACCACCAGGAGCCTTCCACGGAGGGAGAGGAAGAAGAGGAAGA
GGAGGAAGGTACCTTCGACTTCGACGACCTCCCTTCCCACGACTATCACG
GACAACCTCAGCACCTTCCTGCTGCTGCATCAACATCGTCATCGCAACCT
CATGCTATCAGTGCTGCCGGATACCTTCCGAACGCCTCTTCCGCCACCGA
AGCCGGAGTCGGAGCTGGAGCTGGAGCAGGATGCGTTTACCCACACCAGC
ATCAGTATTACCCGCAGCAGCAGCATGCCATGATGGTAGCGGTACAACAG
CAACGGCAACAGCAGCAACAGCAGCAGCAGCAGTTCTTCTACTACCACCA
ACAAGTCCTCGCTCAGAGGCAGGCGCACGCCCGTCACCAACAGCATCTGC
AGCGGCAACTCCACGCACGGCAGCAATGCCTTTCCATGCCGTCCTCCCTT
GCTTCCTCCTCCTCCCCTACCCCTTCCTCGTTCCCTACGAAGGCATCCGA
CTACCACTATGTCCAGCAGCAGCAGCAGCAGCAGCAGCAACCACGCCGAT
GGTTGAGTCGTGCGGCTGCTCCTGAGGATGACGAGGAGGAAGAGGAGGAA
TGGAGAGAGGAAGAGGAGGACGACCAGATGATGTTCCGCGACACGATGTG
TCATCATCAGCAGCAGCAGGTTTTCGGTTCCATGGACGGAGTGTGCTCGT
CGGGGAAAGGAGGGAAGGAGGAGGAGGAGGAGGAAGATGAGGATGTGGAG
TCAATGATGCAATCCGACCCCGAGGAGATCCAGGCCGC
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Coding sequence (CDS) from alignment at scaffold_16:84943..86480+

>mRNA_7026 ID=mRNA_7026|Name=jgi.p|Nanoce1779_2|100200|organism=Nannochloropsis oceanica|type=CDS|length=1350bp|location=Sequence derived from alignment at scaffold_16:84943..86480+ (Nannochloropsis oceanica)
ATGCCATTTGTTGCTTGCATGTTTGTTCATCTCTGCATCTGGATTGTGTC
ACTGTTGGGCATGATGAGTGCGGCGTTGTGTTGCTCGACATTCCATGCCT
CACGGCGAAGGGCAGGAGCCTTCCACGGAGGGAGAGGAAGAAGAGGAAGA
GGAGGAAGGTACCTTCGACTTCGACGACCTCCCTTCCCACGACTATCACG
GACAACCTCAGCACCTTCCTGCTGCTGCATCAACATCGTCATCGCAACCT
CATGCTATCAGTGCTGCCGGATACCTTCCGAACGCCTCTTCCGCCACCGA
AGCCGGAGTCGGAGCTGGAGCTGGAGCAGGATGCGTTTACCCACACCAGC
ATCAGTATTACCCGCAGCAGCAGCATGCCATGATGGTAGCGGTACAACAG
CAACGGCAACAGCAGCAACAGCAGCAGCAGCAGTTCTTCTACTACCACCA
ACAAGTCCTCGCTCAGAGGCAGGCGCACGCCCGTCACCAACAGCATCTGC
AGCGGCAACTCCACGCACGGCAGCAATGCCTTTCCATGCCGTCCTCCCTT
GCTTCCTCCTCCTCCCCTACCCCTTCCTCGTTCCCTACGAAGGCATCCGA
CTACCACTATGTCCAGCAGCAGCAGCAGCAGCAGCAGCAACCACGCCGAT
GGTTGAGTCGTGCGGCTGCTCCTGAATGCCATTTGTTGCTTGCATGTTTG
TTCATCTCTGCATCTGGATTGTGTCACTGTTGGGCATGATGAGTGCGGCG
TTGTGTTGCTCGACATTCCATGCCTCACGGCGAAGGGCAGGAGCCTTCCA
CGGAGGGAGAGGAAGAAGAGGAAGAGGAGGAAGGTACCTTCGACTTCGAC
GACCTCCCTTCCCACGACTATCACGGACAACCTCAGCACCTTCCTGCTGC
TGCATCAACATCGTCATCGCAACCTCATGCTATCAGTGCTGCCGGATACC
TTCCGAACGCCTCTTCCGCCACCGAAGCCGGAGTCGGAGCTGGAGCTGGA
GCAGGATGCGTTTACCCACACCAGCATCAGTATTACCCGCAGCAGCAGCA
TGCCATGATGGTAGCGGTACAACAGCAACGGCAACAGCAGCAACAGCAGC
AGCAGCAGTTCTTCTACTACCACCAACAAGTCCTCGCTCAGAGGCAGGCG
CACGCCCGTCACCAACAGCATCTGCAGCGGCAACTCCACGCACGGCAGCA
ATGCCTTTCCATGCCGTCCTCCCTTGCTTCCTCCTCCTCCCCTACCCCTT
CCTCGTTCCCTACGAAGGCATCCGACTACCACTATGTCCAGCAGCAGCAG
CAGCAGCAGCAGCAACCACGCCGATGGTTGAGTCGTGCGGCTGCTCCTGA
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Synonyms
Publications