jgi.p|Nanoce1779_2|105574, mRNA_7170 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|105574
Unique NamemRNA_7170
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2187
Alignment locationscaffold_16:443463..446205 -

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Properties
Property NameValue
TranscriptId105660
TrackFilteredModels2
ProteinId105574
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:443463..446205 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|105574gene_7170Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|105574mRNA_7170-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7170CDS_7170Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7170 ID=mRNA_7170|Name=jgi.p|Nanoce1779_2|105574|organism=Nannochloropsis oceanica|type=mRNA|length=2187bp
AATTTCGCGGGTCGCTCATCGATTCTAGCTCATCTTCGCACACAGTGTAG
GGCGTAACGTTAGCGGGGCGGATTAGACCAGGCAGGAGCGGGACAAAGGG
ATTCCTCTTGAACAAGATAGGGGCATAATGCCTTGCACCCGCAGCGAAAA
AGAAAGAAAATACTTACGGAAAGCATCACGCGAGGTTACACAACCAGACG
CTCGTAATTATGCGCTTGGAAGGAAGACGCGCATGTGGGATCGTGCGAAG
ACCGGGAGGTTGGTGTCAATTTCTCCCTTCTCATTCACTCACTTTCTTCA
TACGTAAACATTCACAGGGACGAGACCGTACTGCGCCAATATGCATTAGA
GCTTCTCCAGTTGCCTTGGGACGTAGGCACTTTCCGCTCGCCCCGACGTC
CCTACCACCACCCGAAGAGACGGAGCTTCGAGTGAATCATGACTCAGCAC
GATGACAGCAGAGGCAACGACAGCGTCGATGGTGGCACAAATATTGGGCC
GACCGCAGATGGTGAAATTTTACCGCTGTCCTCTAGGGATTTGGAATCGT
TCATCAATGACGGCTACGTCCTTCTTAAGCGAGCATTTGACCCGGCAGTT
GCTGCGGCGTGCCGAGATGAAATTTGGCGGGTGATGGAGGAGGAGACAAG
GACGAGAAAAGGCCGTACTACCAGTGAAAACAATGATGCTACATCGACAA
CGAATATTACGCCCACCCTTTCCTCCTCCACCCCCTCGTCCTTGGCACCA
CCAGCAGCAGCAGCTGCACCAAAACCACCAACACCGAGCTGCACCGTTAT
CTCTCGAGACGATCCTTCCACCTGGCCGACCAAATTCCCTATCACACGTA
TTTATCGATCTGAAGACGGCTCTCCTTGGTCGAATGTCTTCACTGCTCGC
TTACACAAGGCCGTCGATCAATTGTGCGGTGGCCCGGGGAGCTGGGAGTC
ATTTGGATGTGGCTGGTGGATGATAACTTTCCCGAGGGGCTCCAGCGGAG
AGGAAGGTACGAACGAGGGAGAGAGGGAGGACTATTCTTCTCCCTCTTCA
TGTTCCATACAGAGCTCTTCCGCTCCTCCGTCACCTTCTTCGTCCTTCTA
CCCTCCCCACCCCTGGCGACTGGACGGGCACTGGCACATAGATGGCCAAT
ACCGCCACCGATGCATCCACACCCAACAAGTCGGCCTCGTCCCCATCTTC
CTCTTTTCAGATATCAGACGAGGAGGAGGTGGGACGGCGTTGTGTCAAGG
CTCGCATAAGTATATAGCAAGGTTGTTGAGGGAGGCTGGCCCCCAGGGGA
TGGATGCACTCGAAGTGATCAGGAAGGGCCAGGCGTGGGTGAAGGAAAGG
ACGGAGGAAGGAAAGGAGGCAGTTGAGAGGTGTAGAGTGGTGGAGACGGT
GGGAGAGGCCGGTGATGTCATGTTCACGCACCCATTTTTGTTGCATGGAC
GGAGTGCGAATTGTGCGAAGGTATCGAGGGAGGGAGGGAGGGAGGGAGGG
AGGGAGCAAGGGGTGAGGTTTATGTGTCATCCCAGTGTAAGCTTGACAAG
AGTTCCGAGGGTAGGGGGGAGGGAGGAAGAAAATAAGCAAGGGATGAGTG
TGGTGGAGAGGGCGATTGTGGCGGGGTGGGAGGGGAAGGAAGACGGGAGA
GAGATGTTTTTGCACGATGAATGTTTGGCTGCGACTGAGGGCTGGGAAGA
GAGGAAAAGAAGACGACAAGCACAGGGCAGGAAGCAAAAGAGAAGACTTA
AAGAGGGAGGCGGGGAAGGCAACAACGACGAGGAAGCCCTGGAAGCATTG
CCCGTGGGGGTTGATGCAAATGTGATGTCAGTGATGGGGATGACGGGCTT
TGGTAGAGGTGGAAGGAAGAAGAGACTGCAGAGTTGAGAAGAAAGAGACC
AACAGCAACAACAATTGTAGCAGCAGCGACAACAGCAGCGGCAGCAGCGG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGCATGCATGTAATTTTCTTA
CGAAATGTCATATAAGATGAAAAATCAAACACAAATACGAGTAGATAAAA
TGCCCTAAATCAGCAGTAAGAATATTCACGCGAGAAATGTCAAAGCTAAA
ATTTATCTTTACCGGGTGGTTAACTTTGGTATGATCTAAAATCTTCTTAT
ATCCCTACCCACTTATATACACTTCCCTTCTTCCCTC
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protein sequence of jgi.p|Nanoce1779_2|105574

>mRNA_7170-protein ID=mRNA_7170-protein|Name=jgi.p|Nanoce1779_2|105574|organism=Nannochloropsis oceanica|type=polypeptide|length=483bp
MTQHDDSRGNDSVDGGTNIGPTADGEILPLSSRDLESFINDGYVLLKRAF
DPAVAAACRDEIWRVMEEETRTRKGRTTSENNDATSTTNITPTLSSSTPS
SLAPPAAAAAPKPPTPSCTVISRDDPSTWPTKFPITRIYRSEDGSPWSNV
FTARLHKAVDQLCGGPGSWESFGCGWWMITFPRGSSGEEGTNEGEREDYS
SPSSCSIQSSSAPPSPSSSFYPPHPWRLDGHWHIDGQYRHRCIHTQQVGL
VPIFLFSDIRRGGGGTALCQGSHKYIARLLREAGPQGMDALEVIRKGQAW
VKERTEEGKEAVERCRVVETVGEAGDVMFTHPFLLHGRSANCAKVSREGG
REGGREQGVRFMCHPSVSLTRVPRVGGREEENKQGMSVVERAIVAGWEGK
EDGREMFLHDECLAATEGWEERKRRRQAQGRKQKRRLKEGGGEGNNDEEA
LEALPVGVDANVMSVMGMTGFGRGGRKKRLQS*
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mRNA from alignment at scaffold_16:443463..446205-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7170 ID=mRNA_7170|Name=jgi.p|Nanoce1779_2|105574|organism=Nannochloropsis oceanica|type=mRNA|length=2743bp|location=Sequence derived from alignment at scaffold_16:443463..446205- (Nannochloropsis oceanica)
AATTTCGCGGGTCGCTCATCGATTCTAGCTCATCTTCGCACACAGTGTAG
GGCGTAACGTTAGCGGGGCGGATTAGACCAGGCAGGAGCGGGACAAAGGG
ATTCCTCTTGAACAAGATAGGGGCATAATGCCTTGCACCCGCAGCGAAAA
AGAAAGAAAATACTTACGGAAAGCATCACGCGAGGTTACACAACCAGACG
CTCGTAATTATGCGCTTGGAAGGAAGACGCGCATGTGGGATCGTGCGAAG
ACCGGGAGGTTGGTGTCAATTTCTCCCTTCTCATTCACTCACTTTCTTCA
TACGTAAACATTCACAGGGACGAGACCGTACTGCGCCAATATGCATTAGA
GCTTCTCCAGTTGCCTTGGGACGTAGGCACTTTCCGCTCGCCCCGACGTC
CCTACCACCACCCGAAGGCAAGAAGCCATGCCCCACCACTCCCTCCCCCA
TTCCCCAAAGCCCCCCCCACTATTCCCTACCCCAACACCCACATGATGCA
CAAGTAAAAGGTCTGACTGGAGGAATGAATTTGGGGCCAGGTGCCCGACT
CAACCCCCCTCGTACGATAGAGATGTTGTCGTTTCAGCCCATGCTCCGGG
CGTGTGGCATGAGGGTGCAAGGGGTCGCACATTTCTCTGGGGGCAATTAG
TTGCCTCCTAAAGGCACTCGGGTGACCTATCTCTTCGAGAAAGGCACTAA
GCGGGGGACTGGCCCAAGCCACATGGCTTGCGCCCTCCTTATTCTTGTGA
AGAATTGCAAGCGGGTGCGATATTACATGGCTGCTTGGTTTTGTTCGATC
CCTTTTCTTCTCTTTCGGAAGGAGTGAGGAGCAGACATTCACCCCTTTCC
TCTAATGATTTTACAAAGGCGAGTCTGATGGGCATGTAGGGAATCCAACA
TCGCCTTAGACTTCGGAACATTATTCACTTTTTGTCGCATGCTCAATGGT
TGCACCCATTCACATGCACACAGAGACGGAGCTTCGAGTGAATCATGACT
CAGCACGATGACAGCAGAGGCAACGACAGCGTCGATGGTGGCACAAATAT
TGGGCCGACCGCAGATGGTGAAATTTTACCGCTGTCCTCTAGGGATTTGG
AATCGTTCATCAATGACGGCTACGTCCTTCTTAAGCGAGCATTTGACCCG
GCAGTTGCTGCGGCGTGCCGAGATGAAATTTGGCGGGTGATGGAGGAGGA
GACAAGGACGAGAAAAGGCCGTACTACCAGTGAAAACAATGATGCTACAT
CGACAACGAATATTACGCCCACCCTTTCCTCCTCCACCCCCTCGTCCTTG
GCACCACCAGCAGCAGCAGCTGCACCAAAACCACCAACACCGAGCTGCAC
CGTTATCTCTCGAGACGATCCTTCCACCTGGCCGACCAAATTCCCTATCA
CACGTATTTATCGATCTGAAGACGGCTCTCCTTGGTCGAATGTCTTCACT
GCTCGCTTACACAAGGCCGTCGATCAATTGTGCGGTGGCCCGGGGAGCTG
GGAGTCATTTGGATGTGGCTGGTGGATGATAACTTTCCCGAGGGGCTCCA
GCGGAGAGGAAGGTACGAACGAGGGAGAGAGGGAGGACTATTCTTCTCCC
TCTTCATGTTCCATACAGAGCTCTTCCGCTCCTCCGTCACCTTCTTCGTC
CTTCTACCCTCCCCACCCCTGGCGACTGGACGGGCACTGGCACATAGATG
GCCAATACCGCCACCGATGCATCCACACCCAACAAGTCGGCCTCGTCCCC
ATCTTCCTCTTTTCAGATATCAGACGAGGAGGAGGTGGGACGGCGTTGTG
TCAAGGCTCGCATAAGTATATAGCAAGGTTGTTGAGGGAGGCTGGCCCCC
AGGGGATGGATGCACTCGAAGTGATCAGGAAGGGCCAGGCGTGGGTGAAG
GAAAGGACGGAGGAAGGAAAGGAGGCAGTTGAGAGGTGTAGAGTGGTGGA
GACGGTGGGAGAGGCCGGTGATGTCATGTTCACGCACCCATTTTTGTTGC
ATGGACGGAGTGCGAATTGTGCGAAGGTATCGAGGGAGGGAGGGAGGGAG
GGAGGGAGGGAGCAAGGGGTGAGGTTTATGTGTCATCCCAGTGTAAGCTT
GACAAGAGTTCCGAGGGTAGGGGGGAGGGAGGAAGAAAATAAGCAAGGGA
TGAGTGTGGTGGAGAGGGCGATTGTGGCGGGGTGGGAGGGGAAGGAAGAC
GGGAGAGAGATGTTTTTGCACGATGAATGTTTGGCTGCGACTGAGGGCTG
GGAAGAGAGGAAAAGAAGACGACAAGCACAGGGCAGGAAGCAAAAGAGAA
GACTTAAAGAGGGAGGCGGGGAAGGCAACAACGACGAGGAAGCCCTGGAA
GCATTGCCCGTGGGGGTTGATGCAAATGTGATGTCAGTGATGGGGATGAC
GGGCTTTGGTAGAGGTGGAAGGAAGAAGAGACTGCAGAGTTGAGAAGAAA
GAGACCAACAGCAACAACAATTGTAGCAGCAGCGACAACAGCAGCGGCAG
CAGCGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGCATGCATGTAATT
TTCTTACGAAATGTCATATAAGATGAAAAATCAAACACAAATACGAGTAG
ATAAAATGCCCTAAATCAGCAGTAAGAATATTCACGCGAGAAATGTCAAA
GCTAAAATTTATCTTTACCGGGTGGTTAACTTTGGTATGATCTAAAATCT
TCTTATATCCCTACCCACTTATATACACTTCCCTTCTTCCCTC
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Coding sequence (CDS) from alignment at scaffold_16:443463..446205-

>mRNA_7170 ID=mRNA_7170|Name=jgi.p|Nanoce1779_2|105574|organism=Nannochloropsis oceanica|type=CDS|length=1449bp|location=Sequence derived from alignment at scaffold_16:443463..446205- (Nannochloropsis oceanica)
ATGACTCAGCACGATGACAGCAGAGGCAACGACAGCGTCGATGGTGGCAC
AAATATTGGGCCGACCGCAGATGGTGAAATTTTACCGCTGTCCTCTAGGG
ATTTGGAATCGTTCATCAATGACGGCTACGTCCTTCTTAAGCGAGCATTT
GACCCGGCAGTTGCTGCGGCGTGCCGAGATGAAATTTGGCGGGTGATGGA
GGAGGAGACAAGGACGAGAAAAGGCCGTACTACCAGTGAAAACAATGATG
CTACATCGACAACGAATATTACGCCCACCCTTTCCTCCTCCACCCCCTCG
TCCTTGGCACCACCAGCAGCAGCAGCTGCACCAAAACCACCAACACCGAG
CTGCACCGTTATCTCTCGAGACGATCCTTCCACCTGGCCGACCAAATTCC
CTATCACACGTATTTATCGATCTGAAGACGGCTCTCCTTGGTCGAATGTC
TTCACTGCTCGCTTACACAAGGCCGTCGATCAATTGTGCGGTGGCCCGGG
GAGCTGGGAGTCATTTGGATGTGGCTGGTGGATGATAACTTTCCCGAGGG
GCTCCAGCGGAGAGGAAGGTACGAACGAGGGAGAGAGGGAGGACTATTCT
TCTCCCTCTTCATGTTCCATACAGAGCTCTTCCGCTCCTCCGTCACCTTC
TTCGTCCTTCTACCCTCCCCACCCCTGGCGACTGGACGGGCACTGGCACA
TAGATGGCCAATACCGCCACCGATGCATCCACACCCAACAAGTCGGCCTC
GTCCCCATCTTCCTCTTTTCAGATATCAGACGAGGAGGAGGTGGGACGGC
GTTGTGTCAAGGCTCGCATAAGTATATAGCAAGGTTGTTGAGGGAGGCTG
GCCCCCAGGGGATGGATGCACTCGAAGTGATCAGGAAGGGCCAGGCGTGG
GTGAAGGAAAGGACGGAGGAAGGAAAGGAGGCAGTTGAGAGGTGTAGAGT
GGTGGAGACGGTGGGAGAGGCCGGTGATGTCATGTTCACGCACCCATTTT
TGTTGCATGGACGGAGTGCGAATTGTGCGAAGGTATCGAGGGAGGGAGGG
AGGGAGGGAGGGAGGGAGCAAGGGGTGAGGTTTATGTGTCATCCCAGTGT
AAGCTTGACAAGAGTTCCGAGGGTAGGGGGGAGGGAGGAAGAAAATAAGC
AAGGGATGAGTGTGGTGGAGAGGGCGATTGTGGCGGGGTGGGAGGGGAAG
GAAGACGGGAGAGAGATGTTTTTGCACGATGAATGTTTGGCTGCGACTGA
GGGCTGGGAAGAGAGGAAAAGAAGACGACAAGCACAGGGCAGGAAGCAAA
AGAGAAGACTTAAAGAGGGAGGCGGGGAAGGCAACAACGACGAGGAAGCC
CTGGAAGCATTGCCCGTGGGGGTTGATGCAAATGTGATGTCAGTGATGGG
GATGACGGGCTTTGGTAGAGGTGGAAGGAAGAAGAGACTGCAGAGTTGA
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Synonyms
Publications