jgi.p|Nanoce1779_2|595591, mRNA_7092 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|595591
Unique Name	mRNA_7092
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2916
Alignment location	scaffold_16:277988..280903 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	595677
Track	FilteredModels2
ProteinId	595591

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_16	supercontig	scaffold_16:277988..280903 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|595591	gene_7092	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|595591	mRNA_7092-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7092	CDS_7092	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_16:277988..280903+
coding sequence from alignment at scaffold_16:277988..280903+

mRNA sequence

>mRNA_7092 ID=mRNA_7092|Name=jgi.p|Nanoce1779_2|595591|organism=Nannochloropsis oceanica|type=mRNA|length=2916bp
AGAGTAGAGGGCTTGCTGGACCAAGTGCATCGACCGGGGGGCGATCGTCT
GTGTCCACTCAGCTGCCCCTGGAAACTCCTCGGCAGTGCTCGCTCGATCA
TTCCCTCATCATCATGCTTGCCCTCCGACGACGCGCCGTGGCACTGACCA
CCACCACCATTGTGAATTCGAGCAGTAGCAGTGGGTCATCATGTTCATTG
GCCCGGGCGCTCTCCACCAAGCCACCTTCCTTCTCCAGGCATCCTCCTCC
CCATCCCAATGCCAAGGCTCGTCCTCTTGGCGACCTCAAGAAGACTGCCC
CGCCACCGACGGGCACCGGTGCTCCTCCTCCTCCTTCTGGGGGGCCTGTG
CCCCCTACGCCTCACGAACCATCGGGCGGCTTAGGTCTCGGCACCGCGAT
AGGGATGGTGATCTTGGCAGGCGGGACAGCCGTGACAGGGTATTACTACG
TGCTGGCCGACGAGAAGGAGAAGGCGCAAATCGAGGGCTACGTCGCCGAG
GCTAAAGCTATGGTTGGGCTTGCTTCTTCTGCGACTACTGCTGCTGGTGC
AGATGCTGCTGTTGAGACTGCCGCTGCTGCAGAGAAGACGAAGGTAAAAG
TGGAGAAGGTAGTGCATGATGTCGAGGAGGGGACGGCGAGAGCTTCAGAG
AATGTGAAGGCAAAAATTCGGGAGGCAAGCACCACGGCCACAAATGCCTT
TCATGACGTGGAAGATAAGGCATCTGCGAACGTGCATGGCAGTAATGGCG
ATGAGAGGAAGAGGAAGAAGACGGAGGTCGAGGCGGAGGGACCAGCAGCA
AAAGAGAACGGGGGCATGGCGGCAGCGGAGAAGCAGGCGAAGGGAGCACT
GTCCACTGCCAAAGGGATCACGGCTCACGCGGCCGTCGAAAATGTGGAGA
AGCTCGCTGACCAAATCATGGCGGACATCCATGAGCGTACCAACCACAAG
AAAGAAGAAGAAGCAGCAGCAACAGCAGCAGCAGCAGCCACCGCGGAAGA
AGCGTCGCCCAAGGAATCCTCCTCAATTGGCAAGCTCCAGACGGACGCGG
CACTGAAACATTTCGCCACGTACGAGGACAGGGGGAAAGACTTGCGTTTT
GACTCCTTGACGCGAGCAGCCGAAGAGGCCTTAGCACAGGGAGAAGCGTT
ACGGAAGCACCTTGAAGTGACTCTGCTGAAGGATTTATCTTCTCTGAGCA
CGGAAGCTTTGCAGCATCGTGTTTTTCAACTAGTGGGGGAACTGCAGGAG
AGGACGAAGTGGGAGGCGCTGCGATTGCACGAAGCGGTGCGGAAGGCTGA
GGTGGAGGTGAGTGGGAAATATGTGGAACTGATAGCCAAACTCCGAGAGG
AGAGCATGGAGGAAGTGGGTCGACAAGCCCGGGCGTTGGACGCGGAGAAA
CAATCGGCGGTGCAGCAGGTGTTGGACGAGAAGGAAAAAGAATGCAAATT
GCTTCTGGAACAGGAAATGGCGTCGTTTATCGCGGATGCGACCAAGGCGT
TTGAGGAGGAACGAGCGAGGGACAGGGCCGAGATAGAAGGGAAGGCAAAG
CGGGATTTGGAGAACGCTATGTATGAGAAGGAAACTGCTCACCAATCCCT
CGTCGCCGGGCGGATGGAAGAGCTCGACAAGCTCAAGGCGCAGGTGGAGG
CCCTGGACGAGGTTTTCAAAACGGATACCGACTATGAGCACCTCTCTTGG
AAAGTCCACAAGGTCTCTGCTGCTCTCCTCGCCTTCGAGCTCGCTCTACA
AACATCCCTCCCCTTAAAAAAGGAACTCTCTGCCCTCAAGAACGTCACGA
AGGGAGACCCCGTCATGGATGCTGTGCTGTCATCCCTCCCTCCCGCCCTT
GACGACGGTGTCTTTACCCTCTCCGAGCTGCAGGTCAGGTTCCCTATTGT
GCAAGCTGCAGCGCGCGAAGCTGCTTTTGTGCCCGCGTCAAGCCCGGGGA
TGCTCGGCCATATGTTCGGAAGTGTCCTTGCGGCCATCACAATCAAACCA
CGCGGGTTGGTCGAGGGAGCAGGGGCAGACGAGGTGCTTTCTCGCGCGGC
GTATCACGTGGAGCGGGGGAATCTGGCGGGAGCGGTTGGCGAACTGGAGA
GCATGGAAGGCTTGGTCGGGAGGGCGGTGACAAGCTGGGTGGTAGATGCG
AAGGGCAGGTTAGTGATGGAGCAGGCAGTGAGGGCCATGAATGCAAGGAG
TGCCGTGCTGAATGCCAGTATGGTGTAAGAAAGGAGAACGAGGGATGGAG
GGGGAGGGATGGGGAGGAGAAATGGAAACAGGAAGGGATAAAATGGAGGA
TCGGCCGGGCAGTGATAGAGAGCAGGAGAAGTGGCAAGGAGGAGTAGGAG
AGGAATTTCGTTAGAGAACGAGTGCGAGGAAGGACAAGTAGATACATTAT
TACATTGTAAGCGTCAAATTTCCATAGAGCTAGGGGAGGAGAAGAGGAAA
GGATAAAGGAGGGAAAGGCCTACGAAGAAAGAGAAGGAATAAAGAAGAAG
GGTGGTGTCATAATGACTGGATGTCATTTCTTATGTTGTAGAATCAAATC
ATAACTGCGCCGCCAAAAGTTGACTCGATGGGAGGGCGAGTGTCTGCTTT
CTGCCTCAGTGGATAAATAAAAAAGAAAATGCACCCAATCGCAACTTTAT
ATCTGCCCACTACAGCGTCAATCCTCCAACCTCTTCCTCTTCTACCTACA
GCACGCCAGCTAGCGGCTAGCGTGGGCCTCATTCTCTCTCAGATCACACC
CACTGGGTGATAGTTCAAGTGAGCGAGTGCCAAAACGACATGCAGGAACC
CCTCCACTGATTCTTCTCCACTCTCTTTTTGTGAGGTTGGACCCCTGGCA
AACTTTGCTTCACTTTCGCTCTCTATGTACATAAATAACACCCCATGTTT
TCTTCCCTCCCTCCCT

protein sequence of jgi.p|Nanoce1779_2|595591

>mRNA_7092-protein ID=mRNA_7092-protein|Name=jgi.p|Nanoce1779_2|595591|organism=Nannochloropsis oceanica|type=polypeptide|length=705bp
MLALRRRAVALTTTTIVNSSSSSGSSCSLARALSTKPPSFSRHPPPHPNA
KARPLGDLKKTAPPPTGTGAPPPPSGGPVPPTPHEPSGGLGLGTAIGMVI
LAGGTAVTGYYYVLADEKEKAQIEGYVAEAKAMVGLASSATTAAGADAAV
ETAAAAEKTKVKVEKVVHDVEEGTARASENVKAKIREASTTATNAFHDVE
DKASANVHGSNGDERKRKKTEVEAEGPAAKENGGMAAAEKQAKGALSTAK
GITAHAAVENVEKLADQIMADIHERTNHKKEEEAAATAAAAATAEEASPK
ESSSIGKLQTDAALKHFATYEDRGKDLRFDSLTRAAEEALAQGEALRKHL
EVTLLKDLSSLSTEALQHRVFQLVGELQERTKWEALRLHEAVRKAEVEVS
GKYVELIAKLREESMEEVGRQARALDAEKQSAVQQVLDEKEKECKLLLEQ
EMASFIADATKAFEEERARDRAEIEGKAKRDLENAMYEKETAHQSLVAGR
MEELDKLKAQVEALDEVFKTDTDYEHLSWKVHKVSAALLAFELALQTSLP
LKKELSALKNVTKGDPVMDAVLSSLPPALDDGVFTLSELQVRFPIVQAAA
REAAFVPASSPGMLGHMFGSVLAAITIKPRGLVEGAGADEVLSRAAYHVE
RGNLAGAVGELESMEGLVGRAVTSWVVDAKGRLVMEQAVRAMNARSAVLN
ASMV*

mRNA from alignment at scaffold_16:277988..280903+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7092 ID=mRNA_7092|Name=jgi.p|Nanoce1779_2|595591|organism=Nannochloropsis oceanica|type=mRNA|length=2916bp|location=Sequence derived from alignment at scaffold_16:277988..280903+ (Nannochloropsis oceanica)
AGAGTAGAGGGCTTGCTGGACCAAGTGCATCGACCGGGGGGCGATCGTCT
GTGTCCACTCAGCTGCCCCTGGAAACTCCTCGGCAGTGCTCGCTCGATCA
TTCCCTCATCATCATGCTTGCCCTCCGACGACGCGCCGTGGCACTGACCA
CCACCACCATTGTGAATTCGAGCAGTAGCAGTGGGTCATCATGTTCATTG
GCCCGGGCGCTCTCCACCAAGCCACCTTCCTTCTCCAGGCATCCTCCTCC
CCATCCCAATGCCAAGGCTCGTCCTCTTGGCGACCTCAAGAAGACTGCCC
CGCCACCGACGGGCACCGGTGCTCCTCCTCCTCCTTCTGGGGGGCCTGTG
CCCCCTACGCCTCACGAACCATCGGGCGGCTTAGGTCTCGGCACCGCGAT
AGGGATGGTGATCTTGGCAGGCGGGACAGCCGTGACAGGGTATTACTACG
TGCTGGCCGACGAGAAGGAGAAGGCGCAAATCGAGGGCTACGTCGCCGAG
GCTAAAGCTATGGTTGGGCTTGCTTCTTCTGCGACTACTGCTGCTGGTGC
AGATGCTGCTGTTGAGACTGCCGCTGCTGCAGAGAAGACGAAGGTAAAAG
TGGAGAAGGTAGTGCATGATGTCGAGGAGGGGACGGCGAGAGCTTCAGAG
AATGTGAAGGCAAAAATTCGGGAGGCAAGCACCACGGCCACAAATGCCTT
TCATGACGTGGAAGATAAGGCATCTGCGAACGTGCATGGCAGTAATGGCG
ATGAGAGGAAGAGGAAGAAGACGGAGGTCGAGGCGGAGGGACCAGCAGCA
AAAGAGAACGGGGGCATGGCGGCAGCGGAGAAGCAGGCGAAGGGAGCACT
GTCCACTGCCAAAGGGATCACGGCTCACGCGGCCGTCGAAAATGTGGAGA
AGCTCGCTGACCAAATCATGGCGGACATCCATGAGCGTACCAACCACAAG
AAAGAAGAAGAAGCAGCAGCAACAGCAGCAGCAGCAGCCACCGCGGAAGA
AGCGTCGCCCAAGGAATCCTCCTCAATTGGCAAGCTCCAGACGGACGCGG
CACTGAAACATTTCGCCACGTACGAGGACAGGGGGAAAGACTTGCGTTTT
GACTCCTTGACGCGAGCAGCCGAAGAGGCCTTAGCACAGGGAGAAGCGTT
ACGGAAGCACCTTGAAGTGACTCTGCTGAAGGATTTATCTTCTCTGAGCA
CGGAAGCTTTGCAGCATCGTGTTTTTCAACTAGTGGGGGAACTGCAGGAG
AGGACGAAGTGGGAGGCGCTGCGATTGCACGAAGCGGTGCGGAAGGCTGA
GGTGGAGGTGAGTGGGAAATATGTGGAACTGATAGCCAAACTCCGAGAGG
AGAGCATGGAGGAAGTGGGTCGACAAGCCCGGGCGTTGGACGCGGAGAAA
CAATCGGCGGTGCAGCAGGTGTTGGACGAGAAGGAAAAAGAATGCAAATT
GCTTCTGGAACAGGAAATGGCGTCGTTTATCGCGGATGCGACCAAGGCGT
TTGAGGAGGAACGAGCGAGGGACAGGGCCGAGATAGAAGGGAAGGCAAAG
CGGGATTTGGAGAACGCTATGTATGAGAAGGAAACTGCTCACCAATCCCT
CGTCGCCGGGCGGATGGAAGAGCTCGACAAGCTCAAGGCGCAGGTGGAGG
CCCTGGACGAGGTTTTCAAAACGGATACCGACTATGAGCACCTCTCTTGG
AAAGTCCACAAGGTCTCTGCTGCTCTCCTCGCCTTCGAGCTCGCTCTACA
AACATCCCTCCCCTTAAAAAAGGAACTCTCTGCCCTCAAGAACGTCACGA
AGGGAGACCCCGTCATGGATGCTGTGCTGTCATCCCTCCCTCCCGCCCTT
GACGACGGTGTCTTTACCCTCTCCGAGCTGCAGGTCAGGTTCCCTATTGT
GCAAGCTGCAGCGCGCGAAGCTGCTTTTGTGCCCGCGTCAAGCCCGGGGA
TGCTCGGCCATATGTTCGGAAGTGTCCTTGCGGCCATCACAATCAAACCA
CGCGGGTTGGTCGAGGGAGCAGGGGCAGACGAGGTGCTTTCTCGCGCGGC
GTATCACGTGGAGCGGGGGAATCTGGCGGGAGCGGTTGGCGAACTGGAGA
GCATGGAAGGCTTGGTCGGGAGGGCGGTGACAAGCTGGGTGGTAGATGCG
AAGGGCAGGTTAGTGATGGAGCAGGCAGTGAGGGCCATGAATGCAAGGAG
TGCCGTGCTGAATGCCAGTATGGTGTAAGAAAGGAGAACGAGGGATGGAG
GGGGAGGGATGGGGAGGAGAAATGGAAACAGGAAGGGATAAAATGGAGGA
TCGGCCGGGCAGTGATAGAGAGCAGGAGAAGTGGCAAGGAGGAGTAGGAG
AGGAATTTCGTTAGAGAACGAGTGCGAGGAAGGACAAGTAGATACATTAT
TACATTGTAAGCGTCAAATTTCCATAGAGCTAGGGGAGGAGAAGAGGAAA
GGATAAAGGAGGGAAAGGCCTACGAAGAAAGAGAAGGAATAAAGAAGAAG
GGTGGTGTCATAATGACTGGATGTCATTTCTTATGTTGTAGAATCAAATC
ATAACTGCGCCGCCAAAAGTTGACTCGATGGGAGGGCGAGTGTCTGCTTT
CTGCCTCAGTGGATAAATAAAAAAGAAAATGCACCCAATCGCAACTTTAT
ATCTGCCCACTACAGCGTCAATCCTCCAACCTCTTCCTCTTCTACCTACA
GCACGCCAGCTAGCGGCTAGCGTGGGCCTCATTCTCTCTCAGATCACACC
CACTGGGTGATAGTTCAAGTGAGCGAGTGCCAAAACGACATGCAGGAACC
CCTCCACTGATTCTTCTCCACTCTCTTTTTGTGAGGTTGGACCCCTGGCA
AACTTTGCTTCACTTTCGCTCTCTATGTACATAAATAACACCCCATGTTT
TCTTCCCTCCCTCCCT

Coding sequence (CDS) from alignment at scaffold_16:277988..280903+

>mRNA_7092 ID=mRNA_7092|Name=jgi.p|Nanoce1779_2|595591|organism=Nannochloropsis oceanica|type=CDS|length=2115bp|location=Sequence derived from alignment at scaffold_16:277988..280903+ (Nannochloropsis oceanica)
ATGCTTGCCCTCCGACGACGCGCCGTGGCACTGACCACCACCACCATTGT
GAATTCGAGCAGTAGCAGTGGGTCATCATGTTCATTGGCCCGGGCGCTCT
CCACCAAGCCACCTTCCTTCTCCAGGCATCCTCCTCCCCATCCCAATGCC
AAGGCTCGTCCTCTTGGCGACCTCAAGAAGACTGCCCCGCCACCGACGGG
CACCGGTGCTCCTCCTCCTCCTTCTGGGGGGCCTGTGCCCCCTACGCCTC
ACGAACCATCGGGCGGCTTAGGTCTCGGCACCGCGATAGGGATGGTGATC
TTGGCAGGCGGGACAGCCGTGACAGGGTATTACTACGTGCTGGCCGACGA
GAAGGAGAAGGCGCAAATCGAGGGCTACGTCGCCGAGGCTAAAGCTATGG
TTGGGCTTGCTTCTTCTGCGACTACTGCTGCTGGTGCAGATGCTGCTGTT
GAGACTGCCGCTGCTGCAGAGAAGACGAAGGTAAAAGTGGAGAAGGTAGT
GCATGATGTCGAGGAGGGGACGGCGAGAGCTTCAGAGAATGTGAAGGCAA
AAATTCGGGAGGCAAGCACCACGGCCACAAATGCCTTTCATGACGTGGAA
GATAAGGCATCTGCGAACGTGCATGGCAGTAATGGCGATGAGAGGAAGAG
GAAGAAGACGGAGGTCGAGGCGGAGGGACCAGCAGCAAAAGAGAACGGGG
GCATGGCGGCAGCGGAGAAGCAGGCGAAGGGAGCACTGTCCACTGCCAAA
GGGATCACGGCTCACGCGGCCGTCGAAAATGTGGAGAAGCTCGCTGACCA
AATCATGGCGGACATCCATGAGCGTACCAACCACAAGAAAGAAGAAGAAG
CAGCAGCAACAGCAGCAGCAGCAGCCACCGCGGAAGAAGCGTCGCCCAAG
GAATCCTCCTCAATTGGCAAGCTCCAGACGGACGCGGCACTGAAACATTT
CGCCACGTACGAGGACAGGGGGAAAGACTTGCGTTTTGACTCCTTGACGC
GAGCAGCCGAAGAGGCCTTAGCACAGGGAGAAGCGTTACGGAAGCACCTT
GAAGTGACTCTGCTGAAGGATTTATCTTCTCTGAGCACGGAAGCTTTGCA
GCATCGTGTTTTTCAACTAGTGGGGGAACTGCAGGAGAGGACGAAGTGGG
AGGCGCTGCGATTGCACGAAGCGGTGCGGAAGGCTGAGGTGGAGGTGAGT
GGGAAATATGTGGAACTGATAGCCAAACTCCGAGAGGAGAGCATGGAGGA
AGTGGGTCGACAAGCCCGGGCGTTGGACGCGGAGAAACAATCGGCGGTGC
AGCAGGTGTTGGACGAGAAGGAAAAAGAATGCAAATTGCTTCTGGAACAG
GAAATGGCGTCGTTTATCGCGGATGCGACCAAGGCGTTTGAGGAGGAACG
AGCGAGGGACAGGGCCGAGATAGAAGGGAAGGCAAAGCGGGATTTGGAGA
ACGCTATGTATGAGAAGGAAACTGCTCACCAATCCCTCGTCGCCGGGCGG
ATGGAAGAGCTCGACAAGCTCAAGGCGCAGGTGGAGGCCCTGGACGAGGT
TTTCAAAACGGATACCGACTATGAGCACCTCTCTTGGAAAGTCCACAAGG
TCTCTGCTGCTCTCCTCGCCTTCGAGCTCGCTCTACAAACATCCCTCCCC
TTAAAAAAGGAACTCTCTGCCCTCAAGAACGTCACGAAGGGAGACCCCGT
CATGGATGCTGTGCTGTCATCCCTCCCTCCCGCCCTTGACGACGGTGTCT
TTACCCTCTCCGAGCTGCAGGTCAGGTTCCCTATTGTGCAAGCTGCAGCG
CGCGAAGCTGCTTTTGTGCCCGCGTCAAGCCCGGGGATGCTCGGCCATAT
GTTCGGAAGTGTCCTTGCGGCCATCACAATCAAACCACGCGGGTTGGTCG
AGGGAGCAGGGGCAGACGAGGTGCTTTCTCGCGCGGCGTATCACGTGGAG
CGGGGGAATCTGGCGGGAGCGGTTGGCGAACTGGAGAGCATGGAAGGCTT
GGTCGGGAGGGCGGTGACAAGCTGGGTGGTAGATGCGAAGGGCAGGTTAG
TGATGGAGCAGGCAGTGAGGGCCATGAATGCAAGGAGTGCCGTGCTGAAT
GCCAGTATGGTGTAA

Synonyms

Publications