jgi.p|Nanoce1779_2|595684, mRNA_7122 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|595684
Unique Name	mRNA_7122
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1903
Alignment location	scaffold_16:336565..338467 -

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Properties


Property Name	Value
TranscriptId	595770
Track	FilteredModels2
ProteinId	595684

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_16	supercontig	scaffold_16:336565..338467 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|595684	gene_7122	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|595684	mRNA_7122-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7122	CDS_7122	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_16:336565..338467-
coding sequence from alignment at scaffold_16:336565..338467-

mRNA sequence

>mRNA_7122 ID=mRNA_7122|Name=jgi.p|Nanoce1779_2|595684|organism=Nannochloropsis oceanica|type=mRNA|length=1903bp
GGAAAACGGTCCGTCGGCGACGAGAGCAACGGAGCAACCGCCGACCGTCT
TAGGCTAGCAAGGTAATCGATTATTTCAAGATAGGGTTCGGAAGACACAC
TTATGCTTGCCCAGCCAGTTCTGGCAGTCATACCCCACCGCACCACAGCA
CACTCAAGGTCCTCGTAAATTTCTGTGCTGCTTTACGCAGCTTCGTGCCT
GGCAGATTTCAATTATCTCGCCGGCGGCCAGGGCACACGCTAGACCTGCC
CTCTTCCCCTTTGTGTCACACTGAAGCGGAGGGCCATGGTCGAATTAGAG
CACCAGCAACAACTCCAGTCCTTTCCAGCCCCATTGTATCCCTCCTCATC
AACATCCCCTGGCAGTGTAGCGATGGCCTGGCTGGGCCGTAACGGGGAAA
ATTTGCGCCGCGTGCTAAGGGACCTCACCATCAAGGGCCAGCAGATGCCG
CGGAGTCGCAAGGCTGCGACGGCGTTGCTGGTCGGCCTACTGGCTACCTT
GTACTATGGGAGGAGTAAGGACGAGCTTCAGGTGCATACACAACGGACGG
AAATGACGGAAGCTATCATGGCCTTGCTAAGCCTCGATGAGTCGTCGGCG
TTCAAAAGTACTTGGGCGACGCATAATGGCCACATAGCAACGTTGCATGG
CTATCTACGGCCCCAACCCCCTTGCTTACCTTGCACCCAAGAAATTGTGC
ATACAGATGACGGGGGCCACTTTGCATTGGAATGGTACAGTGAGCGAGTG
GGGGCGTCGGCGGTAACAGCAGCCAACACAAGGAAGGTGAGTATGACCGC
ACTCCGCGAGGATTTGCGGACGCGACCTATCGTCCTGCTTCTTCACGGCG
TGAACGATAGCGGACAGCATTCGTACATGCGTCATTTAGCTCACGTGGTC
TGCACAAAAAAAGGATGGCGAGCCGTATGCATGACCTACCGAGGCTGTGG
TACCTTGTCCTTGACTTCGCCACAATGCTATGATGCTGCCAACACGGCAG
ACATCGCCCTGGCCGTAGACACAATCCGAGCGCGTTTTCCTGCCGCATCT
TTGTTCCTGGTGGGCTTTTCCCTCGGCGCAAATATCATGGTCAAGTACTT
GGGCGAAGAAGGGCCTCGGGCTGTGGGCAGGATCTTTGGGGCGGTCGCGA
TTTCAAATCCGTGGGCATTTCATCCCCAGATTGAGTCTTTGCATTACACC
AACAAACCTGGCAGCTTCCATCGCATTTCGGCCTGGGTCTACTCCATCTT
GGTGGCACACGAGTACAAGAAATACGTGCGTCGACACAAGAATCAATTGA
GAGAGCGTCTGAAGGAGCTGCAGCGGCCACTAGAGAGCATGCACACGCTG
CGCGAGCTAGACGAAAACGTGACAGTGCCACTGAATGGTTGGCGAGACTT
GAATCATTACATGACTGCAGCGTCAAGCTCTGAGTATATTGAAGGGGTGG
CGATCCCGTTGCTGGGCCTTAATGCCTTGGACGATCCTCTCGTGAGCCGC
GAGGCTCTAGAGCACACAGTTGCGAAAGCGAGCAAGAATCCGAATGTGAT
CCTTGTGAATACCACCCGGGGCGGGCATATAGGCTGGGGAGGACAGGCTA
GGACGGCGAGCTGGGCGGAGAACTTGACCGTGGAGTTCATACATGCGGCT
GCGAAGGTGCAGGGCTTGTTGCTGGACAGGGAAGAGCCAGAAAAGGAAAT
TGAGAGGCCACACGCGCGCTTGTGAGCTCTAAGGTGTACTGGAATGAGCA
AAATACAGATTTTATACCTAATCAGACGGTGGGGACCCGGGTCTGGGGAT
AGAGGGAGAAGTAAGGGTAGAGATAGAACGAGGGCGACAAACGCACATGC
TACGCCGCTCACGAGCATGAGCAAAATAACTAAAATATTAAAAAGGAAAA
GAA

protein sequence of jgi.p|Nanoce1779_2|595684

>mRNA_7122-protein ID=mRNA_7122-protein|Name=jgi.p|Nanoce1779_2|595684|organism=Nannochloropsis oceanica|type=polypeptide|length=480bp
MVELEHQQQLQSFPAPLYPSSSTSPGSVAMAWLGRNGENLRRVLRDLTIK
GQQMPRSRKAATALLVGLLATLYYGRSKDELQVHTQRTEMTEAIMALLSL
DESSAFKSTWATHNGHIATLHGYLRPQPPCLPCTQEIVHTDDGGHFALEW
YSERVGASAVTAANTRKVSMTALREDLRTRPIVLLLHGVNDSGQHSYMRH
LAHVVCTKKGWRAVCMTYRGCGTLSLTSPQCYDAANTADIALAVDTIRAR
FPAASLFLVGFSLGANIMVKYLGEEGPRAVGRIFGAVAISNPWAFHPQIE
SLHYTNKPGSFHRISAWVYSILVAHEYKKYVRRHKNQLRERLKELQRPLE
SMHTLRELDENVTVPLNGWRDLNHYMTAASSSEYIEGVAIPLLGLNALDD
PLVSREALEHTVAKASKNPNVILVNTTRGGHIGWGGQARTASWAENLTVE
FIHAAAKVQGLLLDREEPEKEIERPHARL*

mRNA from alignment at scaffold_16:336565..338467-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7122 ID=mRNA_7122|Name=jgi.p|Nanoce1779_2|595684|organism=Nannochloropsis oceanica|type=mRNA|length=1903bp|location=Sequence derived from alignment at scaffold_16:336565..338467- (Nannochloropsis oceanica)
GGAAAACGGTCCGTCGGCGACGAGAGCAACGGAGCAACCGCCGACCGTCT
TAGGCTAGCAAGGTAATCGATTATTTCAAGATAGGGTTCGGAAGACACAC
TTATGCTTGCCCAGCCAGTTCTGGCAGTCATACCCCACCGCACCACAGCA
CACTCAAGGTCCTCGTAAATTTCTGTGCTGCTTTACGCAGCTTCGTGCCT
GGCAGATTTCAATTATCTCGCCGGCGGCCAGGGCACACGCTAGACCTGCC
CTCTTCCCCTTTGTGTCACACTGAAGCGGAGGGCCATGGTCGAATTAGAG
CACCAGCAACAACTCCAGTCCTTTCCAGCCCCATTGTATCCCTCCTCATC
AACATCCCCTGGCAGTGTAGCGATGGCCTGGCTGGGCCGTAACGGGGAAA
ATTTGCGCCGCGTGCTAAGGGACCTCACCATCAAGGGCCAGCAGATGCCG
CGGAGTCGCAAGGCTGCGACGGCGTTGCTGGTCGGCCTACTGGCTACCTT
GTACTATGGGAGGAGTAAGGACGAGCTTCAGGTGCATACACAACGGACGG
AAATGACGGAAGCTATCATGGCCTTGCTAAGCCTCGATGAGTCGTCGGCG
TTCAAAAGTACTTGGGCGACGCATAATGGCCACATAGCAACGTTGCATGG
CTATCTACGGCCCCAACCCCCTTGCTTACCTTGCACCCAAGAAATTGTGC
ATACAGATGACGGGGGCCACTTTGCATTGGAATGGTACAGTGAGCGAGTG
GGGGCGTCGGCGGTAACAGCAGCCAACACAAGGAAGGTGAGTATGACCGC
ACTCCGCGAGGATTTGCGGACGCGACCTATCGTCCTGCTTCTTCACGGCG
TGAACGATAGCGGACAGCATTCGTACATGCGTCATTTAGCTCACGTGGTC
TGCACAAAAAAAGGATGGCGAGCCGTATGCATGACCTACCGAGGCTGTGG
TACCTTGTCCTTGACTTCGCCACAATGCTATGATGCTGCCAACACGGCAG
ACATCGCCCTGGCCGTAGACACAATCCGAGCGCGTTTTCCTGCCGCATCT
TTGTTCCTGGTGGGCTTTTCCCTCGGCGCAAATATCATGGTCAAGTACTT
GGGCGAAGAAGGGCCTCGGGCTGTGGGCAGGATCTTTGGGGCGGTCGCGA
TTTCAAATCCGTGGGCATTTCATCCCCAGATTGAGTCTTTGCATTACACC
AACAAACCTGGCAGCTTCCATCGCATTTCGGCCTGGGTCTACTCCATCTT
GGTGGCACACGAGTACAAGAAATACGTGCGTCGACACAAGAATCAATTGA
GAGAGCGTCTGAAGGAGCTGCAGCGGCCACTAGAGAGCATGCACACGCTG
CGCGAGCTAGACGAAAACGTGACAGTGCCACTGAATGGTTGGCGAGACTT
GAATCATTACATGACTGCAGCGTCAAGCTCTGAGTATATTGAAGGGGTGG
CGATCCCGTTGCTGGGCCTTAATGCCTTGGACGATCCTCTCGTGAGCCGC
GAGGCTCTAGAGCACACAGTTGCGAAAGCGAGCAAGAATCCGAATGTGAT
CCTTGTGAATACCACCCGGGGCGGGCATATAGGCTGGGGAGGACAGGCTA
GGACGGCGAGCTGGGCGGAGAACTTGACCGTGGAGTTCATACATGCGGCT
GCGAAGGTGCAGGGCTTGTTGCTGGACAGGGAAGAGCCAGAAAAGGAAAT
TGAGAGGCCACACGCGCGCTTGTGAGCTCTAAGGTGTACTGGAATGAGCA
AAATACAGATTTTATACCTAATCAGACGGTGGGGACCCGGGTCTGGGGAT
AGAGGGAGAAGTAAGGGTAGAGATAGAACGAGGGCGACAAACGCACATGC
TACGCCGCTCACGAGCATGAGCAAAATAACTAAAATATTAAAAAGGAAAA
GAA

Coding sequence (CDS) from alignment at scaffold_16:336565..338467-

>mRNA_7122 ID=mRNA_7122|Name=jgi.p|Nanoce1779_2|595684|organism=Nannochloropsis oceanica|type=CDS|length=1440bp|location=Sequence derived from alignment at scaffold_16:336565..338467- (Nannochloropsis oceanica)
ATGGTCGAATTAGAGCACCAGCAACAACTCCAGTCCTTTCCAGCCCCATT
GTATCCCTCCTCATCAACATCCCCTGGCAGTGTAGCGATGGCCTGGCTGG
GCCGTAACGGGGAAAATTTGCGCCGCGTGCTAAGGGACCTCACCATCAAG
GGCCAGCAGATGCCGCGGAGTCGCAAGGCTGCGACGGCGTTGCTGGTCGG
CCTACTGGCTACCTTGTACTATGGGAGGAGTAAGGACGAGCTTCAGGTGC
ATACACAACGGACGGAAATGACGGAAGCTATCATGGCCTTGCTAAGCCTC
GATGAGTCGTCGGCGTTCAAAAGTACTTGGGCGACGCATAATGGCCACAT
AGCAACGTTGCATGGCTATCTACGGCCCCAACCCCCTTGCTTACCTTGCA
CCCAAGAAATTGTGCATACAGATGACGGGGGCCACTTTGCATTGGAATGG
TACAGTGAGCGAGTGGGGGCGTCGGCGGTAACAGCAGCCAACACAAGGAA
GGTGAGTATGACCGCACTCCGCGAGGATTTGCGGACGCGACCTATCGTCC
TGCTTCTTCACGGCGTGAACGATAGCGGACAGCATTCGTACATGCGTCAT
TTAGCTCACGTGGTCTGCACAAAAAAAGGATGGCGAGCCGTATGCATGAC
CTACCGAGGCTGTGGTACCTTGTCCTTGACTTCGCCACAATGCTATGATG
CTGCCAACACGGCAGACATCGCCCTGGCCGTAGACACAATCCGAGCGCGT
TTTCCTGCCGCATCTTTGTTCCTGGTGGGCTTTTCCCTCGGCGCAAATAT
CATGGTCAAGTACTTGGGCGAAGAAGGGCCTCGGGCTGTGGGCAGGATCT
TTGGGGCGGTCGCGATTTCAAATCCGTGGGCATTTCATCCCCAGATTGAG
TCTTTGCATTACACCAACAAACCTGGCAGCTTCCATCGCATTTCGGCCTG
GGTCTACTCCATCTTGGTGGCACACGAGTACAAGAAATACGTGCGTCGAC
ACAAGAATCAATTGAGAGAGCGTCTGAAGGAGCTGCAGCGGCCACTAGAG
AGCATGCACACGCTGCGCGAGCTAGACGAAAACGTGACAGTGCCACTGAA
TGGTTGGCGAGACTTGAATCATTACATGACTGCAGCGTCAAGCTCTGAGT
ATATTGAAGGGGTGGCGATCCCGTTGCTGGGCCTTAATGCCTTGGACGAT
CCTCTCGTGAGCCGCGAGGCTCTAGAGCACACAGTTGCGAAAGCGAGCAA
GAATCCGAATGTGATCCTTGTGAATACCACCCGGGGCGGGCATATAGGCT
GGGGAGGACAGGCTAGGACGGCGAGCTGGGCGGAGAACTTGACCGTGGAG
TTCATACATGCGGCTGCGAAGGTGCAGGGCTTGTTGCTGGACAGGGAAGA
GCCAGAAAAGGAAATTGAGAGGCCACACGCGCGCTTGTGA

Synonyms

Publications