jgi.p|Nanoce1779_2|595720, mRNA_7132 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|595720
Unique NamemRNA_7132
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1757
Alignment locationscaffold_16:371284..373219 -

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Properties
Property NameValue
TranscriptId595806
TrackFilteredModels2
ProteinId595720
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:371284..373219 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595720gene_7132Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595720mRNA_7132-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7132CDS_7132Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7132 ID=mRNA_7132|Name=jgi.p|Nanoce1779_2|595720|organism=Nannochloropsis oceanica|type=mRNA|length=1757bp
AACAGGTCTATCCCTGTTGCCACACAAGGTACGTGATGCTCTCCGCCGGG
AAGGAGGGTTCGCGATTGCCAGGACGGTTTCATTTCCCCCTCTTCTTCAG
CAGCCTCCCAGTCCTTATGGTCGTCCTCCTCGTTTTCAGTCTCTCCGCTC
CTCGCACCGCTGCCGTGGTCGTGTCCATTCCACACCATCATTGCATAGGT
CATGCGGAGGCTACGGCGGTGATTGATATCCATAATGTGATCGGGGACCT
TCCCGTGCGAGCAGGCAAGGAATTTGTTGTCACAGTGCATGCGACGCCTA
ATGCGGTTCTGGATGGTGGAGTAATTTATATGGTGGTCAAGGCCCTGGGT
GTCTCAGTTTCCTCTCATTCGTTCAACATTTGCAAGGACATAGGTCTAGA
GTGCCCTGTCGTGCCCCAACAAAAAATTACTGCTGTTTTCCACTTCCCAG
TGCCCTGGTACGCGATCACAATGAAGGCCGACGTTGTGATTACTGCCACG
GACAAACTTGGCCAGTCCCTTGCGTGTGTGTTGGCACCGCAAGTTCCAGT
TGTACGAAAGGGCTATGAGGATCCCGTCTTACCGGAGGTGGTGGCTGGAG
AGTTGAGTCCGACACAAGAGGGAGAAAGGCAGATAGACGGCAGGGGCACG
GATTTGGGTGATGATTATGACGTGTATGCTGGAAGAAGCTGTGGGGACGG
TGGTGGGAAGTTTGTGAGTGCGAGTAAGGGTTTATGGGCTCTTGTTTGTG
AGTGAAGAGGCGATGCTGACAGGACTTGCGAAATTGAAAGCTTGTAATGT
AGATTAAAAACAGAACAAAATCAGAAGTAGAATAATGAAATGAGAACGCG
TACGCATCTGGTGGTTTATATGCGGCTCGGATCGTTCTTTATCTTGGGTG
TATGCTTCATACACGTCTGCAGCGGGAGTTAAAAGAACGTCCGAAGGAGA
AAGCAAAAAGTTCACCACTCGGGGCCGCCAGCTGTCCTCTCATCCCTCTT
GCTTACCAGTCCCTGTCGTACTCCTTGGTATCACACATGGGCTGCCATCT
TTGCCATGGACCACCTACTTACAGCTATTTTACTTCTCCCTTCATTCGCT
CACGCAGCTCGGACCCTCCGAGGGAGGCAACGATGGTGAAAGACTGGTCG
CACCTGCTTTGCGCCCCCCTACAGTTCGTACCTTGTGTTTTCGGTCTATT
TTTTTTGTCTGTCTGTCTCTCTTCCGCGTGGCATTTCTTACCTTTCTCTT
CCTCGTCTCAACGCCTCCTTATATGGGCCTTGTTCTCCTTTACTAGTACC
ACGCGAACACACACGATATGAATCGTCCAGGCTTGCACACCTCTTCTGCT
TTGCGGGACTTTGCGGGGTGTGCGGCGCATAACATACAAATAAACCTACT
ATCTTTCTATTTTTACATGTGAGGGGCGCGGGGGGCGGGGAGGGGGGGGG
GGGTACTCGCCCAACCGCTAAAAATAGAAATGCATAGCTTCAAATCCACC
CCACGCTCCCTTATTTGATCTCTAAGCTGGTGTGTGGGGAGTGTTTGGCC
ATCAAATGATTTAGGGGGCGCTGCAGCTTATTCAGGCGAGTTTGACGGAG
TAGAGGAGGAGGAGGAGGCAGAGGAAACCGAGCCGGAATTCATCGAAGTC
AAAGAAGAGGAGCTGGAGTCGGCGCCCAGCATCGGCTCAGCACGCCCACC
GTTCACATTTCCGGGGCCACGCCGACCCGCGCCGGGTGCAGCAGTGCGGA
GGGGAGG
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protein sequence of jgi.p|Nanoce1779_2|595720

>mRNA_7132-protein ID=mRNA_7132-protein|Name=jgi.p|Nanoce1779_2|595720|organism=Nannochloropsis oceanica|type=polypeptide|length=240bp
MLSAGKEGSRLPGRFHFPLFFSSLPVLMVVLLVFSLSAPRTAAVVVSIPH
HHCIGHAEATAVIDIHNVIGDLPVRAGKEFVVTVHATPNAVLDGGVIYMV
VKALGVSVSSHSFNICKDIGLECPVVPQQKITAVFHFPVPWYAITMKADV
VITATDKLGQSLACVLAPQVPVVRKGYEDPVLPEVVAGELSPTQEGERQI
DGRGTDLGDDYDVYAGRSCGDGGGKFVSASKGLWALVCE*
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mRNA from alignment at scaffold_16:371284..373219-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7132 ID=mRNA_7132|Name=jgi.p|Nanoce1779_2|595720|organism=Nannochloropsis oceanica|type=mRNA|length=1936bp|location=Sequence derived from alignment at scaffold_16:371284..373219- (Nannochloropsis oceanica)
AACAGGTCTATCCCTGTTGCCACACAAGGTACGTGATGCTCTCCGCCGGG
AAGGAGGGTTCGCGATTGCCAGGACGGTTTCATTTCCCCCTCTTCTTCAG
CAGCCTCCCAGTCCTTATGGTCGTCCTCCTCGTTTTCAGTCTCTCCGCTC
CTCGCACCGCTGCCGTGGTCGTGTCCATTCCACACCATCATTGCATAGGT
CATGCGGAGGCTACGGCGGTGATTGATATCCATAATGTGATCGGTAAGTC
TCAGAAAGACGGTGCTTGAGGTGGCATTCGGGATTGCCACTTCGCTAACT
GCTCCTCATTTTCTAATATTCTTGAGTATTTTGTCTGGATTGTGAATTGA
GTGTGTGTATATTTGCAAGACGTATTTGTGGAGCTCTCCCACATACCAGC
CCACCAACCGCACGCAACACAGGGGACCTTCCCGTGCGAGCAGGCAAGGA
ATTTGTTGTCACAGTGCATGCGACGCCTAATGCGGTTCTGGATGGTGGAG
TAATTTATATGGTGGTCAAGGCCCTGGGTGTCTCAGTTTCCTCTCATTCG
TTCAACATTTGCAAGGACATAGGTCTAGAGTGCCCTGTCGTGCCCCAACA
AAAAATTACTGCTGTTTTCCACTTCCCAGTGCCCTGGTACGCGATCACAA
TGAAGGCCGACGTTGTGATTACTGCCACGGACAAACTTGGCCAGTCCCTT
GCGTGTGTGTTGGCACCGCAAGTTCCAGTTGTACGAAAGGGCTATGAGGA
TCCCGTCTTACCGGAGGTGGTGGCTGGAGAGTTGAGTCCGACACAAGAGG
GAGAAAGGCAGATAGACGGCAGGGGCACGGATTTGGGTGATGATTATGAC
GTGTATGCTGGAAGAAGCTGTGGGGACGGTGGTGGGAAGTTTGTGAGTGC
GAGTAAGGGTTTATGGGCTCTTGTTTGTGAGTGAAGAGGCGATGCTGACA
GGACTTGCGAAATTGAAAGCTTGTAATGTAGATTAAAAACAGAACAAAAT
CAGAAGTAGAATAATGAAATGAGAACGCGTACGCATCTGGTGGTTTATAT
GCGGCTCGGATCGTTCTTTATCTTGGGTGTATGCTTCATACACGTCTGCA
GCGGGAGTTAAAAGAACGTCCGAAGGAGAAAGCAAAAAGTTCACCACTCG
GGGCCGCCAGCTGTCCTCTCATCCCTCTTGCTTACCAGTCCCTGTCGTAC
TCCTTGGTATCACACATGGGCTGCCATCTTTGCCATGGACCACCTACTTA
CAGCTATTTTACTTCTCCCTTCATTCGCTCACGCAGCTCGGACCCTCCGA
GGGAGGCAACGATGGTGAAAGACTGGTCGCACCTGCTTTGCGCCCCCCTA
CAGTTCGTACCTTGTGTTTTCGGTCTATTTTTTTTGTCTGTCTGTCTCTC
TTCCGCGTGGCATTTCTTACCTTTCTCTTCCTCGTCTCAACGCCTCCTTA
TATGGGCCTTGTTCTCCTTTACTAGTACCACGCGAACACACACGATATGA
ATCGTCCAGGCTTGCACACCTCTTCTGCTTTGCGGGACTTTGCGGGGTGT
GCGGCGCATAACATACAAATAAACCTACTATCTTTCTATTTTTACATGTG
AGGGGCGCGGGGGGCGGGGAGGGGGGGGGGGGTACTCGCCCAACCGCTAA
AAATAGAAATGCATAGCTTCAAATCCACCCCACGCTCCCTTATTTGATCT
CTAAGCTGGTGTGTGGGGAGTGTTTGGCCATCAAATGATTTAGGGGGCGC
TGCAGCTTATTCAGGCGAGTTTGACGGAGTAGAGGAGGAGGAGGAGGCAG
AGGAAACCGAGCCGGAATTCATCGAAGTCAAAGAAGAGGAGCTGGAGTCG
GCGCCCAGCATCGGCTCAGCACGCCCACCGTTCACATTTCCGGGGCCACG
CCGACCCGCGCCGGGTGCAGCAGTGCGGAGGGGAGG
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Coding sequence (CDS) from alignment at scaffold_16:371284..373219-

>mRNA_7132 ID=mRNA_7132|Name=jgi.p|Nanoce1779_2|595720|organism=Nannochloropsis oceanica|type=CDS|length=1440bp|location=Sequence derived from alignment at scaffold_16:371284..373219- (Nannochloropsis oceanica)
GGGACCTTCCCGTGCGAGCAGGCAAGGAATTTGTTGTCACAGTGCATGCG
ACGCCTAATGCGGTTCTGGATGGTGGAGTAATTTATATGGTGGTCAAGGC
CCTGGGTGTCTCAGTTTCCTCTCATTCGTTCAACATTTGCAAGGACATAG
GTCTAGAGTGCCCTGTCGTGCCCCAACAAAAAATTACTGCTGTTTTCCAC
TTCCCAGTGCCCTGGTACGCGATCACAATGAAGGCCGACGTTGTGATTAC
TGCCACGGACAAACTTGGCCAGTCCCTTGCGTGTGTGTTGGCACCGCAAG
TTCCAGTTGTACGAAAGGGCTATGAGGATCCCGTCTTACCGGAGGTGGTG
GCTGGAGAGTTGAGTCCGACACAAGAGGGAGAAAGGCAGATAGACGGCAG
GGGCACGGATTTGGGTGATGATTATGACGTGTATGCTGGAAGAAGCTGTG
GGGACGGTGGTGGGAAGTTTGTGAGTGCGAGTAAGGGTTTATGGGCTCTT
GTTTGTGAGTGAATGCTCTCCGCCGGGAAGGAGGGTTCGCGATTGCCAGG
ACGGTTTCATTTCCCCCTCTTCTTCAGCAGCCTCCCAGTCCTTATGGTCG
TCCTCCTCGTTTTCAGTCTCTCCGCTCCTCGCACCGCTGCCGTGGTCGTG
TCCATTCCACACCATCATTGCATAGGTCATGCGGAGGCTACGGCGGTGAT
TGATATCCATAATGTGATCGGGGACCTTCCCGTGCGAGCAGGCAAGGAAT
TTGTTGTCACAGTGCATGCGACGCCTAATGCGGTTCTGGATGGTGGAGTA
ATTTATATGGTGGTCAAGGCCCTGGGTGTCTCAGTTTCCTCTCATTCGTT
CAACATTTGCAAGGACATAGGTCTAGAGTGCCCTGTCGTGCCCCAACAAA
AAATTACTGCTGTTTTCCACTTCCCAGTGCCCTGGTACGCGATCACAATG
AAGGCCGACGTTGTGATTACTGCCACGGACAAACTTGGCCAGTCCCTTGC
GTGTGTGTTGGCACCGCAAGTTCCAGTTGTACGAAAGGGCTATGAGGATC
CCGTCTTACCGGAGGTGGTGGCTGGAGAGTTGAGTCCGACACAAGAGGGA
GAAAGGCAGATAGACGGCAGGGGCACGGATTTGGGTGATGATTATGACGT
GTATGCTGGAAGAAGCTGTGGGGACGGTGGTGGGAAGTTTGTGAGTGCGA
GTAAGGGTTTATGGGCTCTTGTTTGTGAGTGAATGCTCTCCGCCGGGAAG
GAGGGTTCGCGATTGCCAGGACGGTTTCATTTCCCCCTCTTCTTCAGCAG
CCTCCCAGTCCTTATGGTCGTCCTCCTCGTTTTCAGTCTCTCCGCTCCTC
GCACCGCTGCCGTGGTCGTGTCCATTCCACACCATCATTGCATAGGTCAT
GCGGAGGCTACGGCGGTGATTGATATCCATAATGTGATCG
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Synonyms
Publications