jgi.p|Nanoce1779_2|595736, mRNA_7138 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|595736
Unique NamemRNA_7138
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1219
Alignment locationscaffold_16:380613..382260 -

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Properties
Property NameValue
TranscriptId595822
TrackFilteredModels2
ProteinId595736
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:380613..382260 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595736gene_7138Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595736mRNA_7138-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7138CDS_7138Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7138 ID=mRNA_7138|Name=jgi.p|Nanoce1779_2|595736|organism=Nannochloropsis oceanica|type=mRNA|length=1219bp
ACAGGTAAACTCCTCCAAAAACCAACTCCATCAACAAAATGTCTGGCGCA
GGCAAAGGTGCAGGGAAGGGCGGCAAGGCCGGGAAGGGAGGAAAGGGGGC
CAGTGGCAAGCGTGCTCCCCAGTCTCGATCCTCTCGTGCGGGTCTCCAGT
TCCCCGTCGGGCGTATCCACCGTTTCCTCAAGACCCGTGTGACGACGAGC
CAGCGCGTGGGTGCCACCGCTGCTGTCTACACGGCCGCCATCCTGGAGTA
CCTGACGGCCGAGGTCCTGGAGCTTGCCGGTAACGCCTGCAAGGACTTGA
AGGTGAAGCGTATCACTCCCCGTCACTTGCAGCTCGCCATTCGTGGTGAC
GAGGAGCTGGACGCGCTCATTAAGGCGACCATTGCCGGAGGTGGTGTCAT
CCCCCACATCCACAAATCTCTCATCACCAAGACCAAGGGCGCCAAGACCA
AGTAAGGTGGAGCAGCAGGCAGCAGTAGTTGCAGGAGCAGCGGCCTCATT
CTTATGTGTCCGCTTGTTTGCCTTTGTCTACCTTTTCCCTGTGTGCCTAC
TTTTCGCAGCAGTAAGATATATATATATAATGATAAACACCATGAAAGGA
AGACCAAGAAGCCGGACACATGCATGCATGCATTAGTAGTGTAAGGCCGC
TGTCTATGTGCGTGTGAAGAGGTAATGGAGGGCGAGAGTCGAGAACCGAC
ATGAGTGTGTGTGTGGGAGAGGGAGAATGAGAGAGACAAAGAGAGGGAAA
GAAAGGGGGGGGGAGAGAATATGTGTAAGTAAATGCTGGGATAGCTCTAA
GTCTTGCTCTTGCTGGTGCCTCTGGGTGACAGGAATGAGAATGCGCTTGT
CGCATCCCTACTCAAAACACTCCAAAAAAAGAAAGCTTGTCACAGTAAGG
AGGCACAAAGAATAACAACAAAGAGAGAAAGTTTAAAAAAAAAGAGCGCG
GGAGGAAGACCATCAAGACACGCACCGGGTCAAGGAGAAAGAACATCAAG
GGAGGAGAGAGAGAAACAGAAGGTGAAAGGTGATGGGCGTGTAAGTGCGT
GTTTGTGCACCTTGTCTCGAAGCCTCAAGGCGGCAATTTTCCAAAATGGG
AAGGCGTATGCCCAGGCTGAAAGGAGGAGCCAGCGAGTGAGAAGCACGTG
GACGTGACATGCCTCCCCTAAACATGAGGTCGACCCCAAAAAAGTGAAAT
AATTTGCGACCCCCCACTA
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protein sequence of jgi.p|Nanoce1779_2|595736

>mRNA_7138-protein ID=mRNA_7138-protein|Name=jgi.p|Nanoce1779_2|595736|organism=Nannochloropsis oceanica|type=polypeptide|length=139bp
MSGAGKGAGKGGKAGKGGKGASGKRAPQSRSSRAGLQFPVGRIHRFLKTR
VTTSQRVGATAAVYTAAILEYLTAEVLELAGNACKDLKVKRITPRHLQLA
IRGDEELDALIKATIAGGGVIPHIHKSLITKTKGAKTK*
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mRNA from alignment at scaffold_16:380613..382260-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7138 ID=mRNA_7138|Name=jgi.p|Nanoce1779_2|595736|organism=Nannochloropsis oceanica|type=mRNA|length=1648bp|location=Sequence derived from alignment at scaffold_16:380613..382260- (Nannochloropsis oceanica)
ACAGGTAAACTCCTCCAAAAACCAACTCCATCAACAAAATGGTACGTATA
GCTATGTCAGCTCAGATAGGGAAGGCAGCTGCGTCGTGCAGGGTATGGCG
GGGCTTATTCGCTTTCCGTTTCTTGCTTTGATGTCCCTCTCACTCTCCTT
ACCCCCCACTCTCCCTTCCTCACAGTCTGGCGCAGGCAAAGGTGCAGGGA
AGGGCGGCAAGGCCGGGAAGGGAGGAAAGGGGGCCAGTGGCAAGCGTGCT
CCCCAGTCTCGATCCTCTCGTGCGGGTCTCCAGGTACGTGATGACTGAGA
GTTGGATGGATGCGTGACTCATCTCACCTTAACCCCCCTGACCATGATTG
TGTGTGTCTATGTGCGTGTGTGTGTGTCGTGTAAATGTCGGCAGGGATTT
GCAGCAGGCAAGCATGGTTGGGAACGATAATGAGAAGGATGATGCATGCC
TGCGTGTCCCTGCCGACATTCGATACGGTGTGTGGACGTGTTACTAGTTT
TGAGTCGCACCTTGCGTGCTTGTGTGTTTTCCCTATCCATGGCTCAAATC
CCCTGCCCTCTCCGTTCTCCCACTACAGTTCCCCGTCGGGCGTATCCACC
GTTTCCTCAAGACCCGTGTGACGACGAGCCAGCGCGTGGGTGCCACCGCT
GCTGTCTACACGGCCGCCATCCTGGAGTACCTGACGGCCGAGGTCCTGGA
GCTTGCCGGTAACGCCTGCAAGGACTTGAAGGTGAAGCGTATCACTCCCC
GTCACTTGCAGCTCGCCATTCGTGGTGACGAGGAGCTGGACGCGCTCATT
AAGGCGACCATTGCCGGAGGTGGTGTCATCCCCCACATCCACAAATCTCT
CATCACCAAGACCAAGGGCGCCAAGACCAAGTAAGGTGGAGCAGCAGGCA
GCAGTAGTTGCAGGAGCAGCGGCCTCATTCTTATGTGTCCGCTTGTTTGC
CTTTGTCTACCTTTTCCCTGTGTGCCTACTTTTCGCAGCAGTAAGATATA
TATATATAATGATAAACACCATGAAAGGAAGACCAAGAAGCCGGACACAT
GCATGCATGCATTAGTAGTGTAAGGCCGCTGTCTATGTGCGTGTGAAGAG
GTAATGGAGGGCGAGAGTCGAGAACCGACATGAGTGTGTGTGTGGGAGAG
GGAGAATGAGAGAGACAAAGAGAGGGAAAGAAAGGGGGGGGGAGAGAATA
TGTGTAAGTAAATGCTGGGATAGCTCTAAGTCTTGCTCTTGCTGGTGCCT
CTGGGTGACAGGAATGAGAATGCGCTTGTCGCATCCCTACTCAAAACACT
CCAAAAAAAGAAAGCTTGTCACAGTAAGGAGGCACAAAGAATAACAACAA
AGAGAGAAAGTTTAAAAAAAAAGAGCGCGGGAGGAAGACCATCAAGACAC
GCACCGGGTCAAGGAGAAAGAACATCAAGGGAGGAGAGAGAGAAACAGAA
GGTGAAAGGTGATGGGCGTGTAAGTGCGTGTTTGTGCACCTTGTCTCGAA
GCCTCAAGGCGGCAATTTTCCAAAATGGGAAGGCGTATGCCCAGGCTGAA
AGGAGGAGCCAGCGAGTGAGAAGCACGTGGACGTGACATGCCTCCCCTAA
ACATGAGGTCGACCCCAAAAAAGTGAAATAATTTGCGACCCCCCACTA
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Coding sequence (CDS) from alignment at scaffold_16:380613..382260-

>mRNA_7138 ID=mRNA_7138|Name=jgi.p|Nanoce1779_2|595736|organism=Nannochloropsis oceanica|type=CDS|length=1251bp|location=Sequence derived from alignment at scaffold_16:380613..382260- (Nannochloropsis oceanica)
TTCCCCGTCGGGCGTATCCACCGTTTCCTCAAGACCCGTGTGACGACGAG
CCAGCGCGTGGGTGCCACCGCTGCTGTCTACACGGCCGCCATCCTGGAGT
ACCTGACGGCCGAGGTCCTGGAGCTTGCCGGTAACGCCTGCAAGGACTTG
AAGGTGAAGCGTATCACTCCCCGTCACTTGCAGCTCGCCATTCGTGGTGA
CGAGGAGCTGGACGCGCTCATTAAGGCGACCATTGCCGGAGGTGGTGTCA
TCCCCCACATCCACAAATCTCTCATCACCAAGACCAAGGGCGCCAAGACC
AAGTAATCTGGCGCAGGCAAAGGTGCAGGGAAGGGCGGCAAGGCCGGGAA
GGGAGGAAAGGGGGCCAGTGGCAAGCGTGCTCCCCAGTCTCGATCCTCTC
GTGCGGGTCTCCAGATGTTCCCCGTCGGGCGTATCCACCGTTTCCTCAAG
ACCCGTGTGACGACGAGCCAGCGCGTGGGTGCCACCGCTGCTGTCTACAC
GGCCGCCATCCTGGAGTACCTGACGGCCGAGGTCCTGGAGCTTGCCGGTA
ACGCCTGCAAGGACTTGAAGGTGAAGCGTATCACTCCCCGTCACTTGCAG
CTCGCCATTCGTGGTGACGAGGAGCTGGACGCGCTCATTAAGGCGACCAT
TGCCGGAGGTGGTGTCATCCCCCACATCCACAAATCTCTCATCACCAAGA
CCAAGGGCGCCAAGACCAAGTAATCTGGCGCAGGCAAAGGTGCAGGGAAG
GGCGGCAAGGCCGGGAAGGGAGGAAAGGGGGCCAGTGGCAAGCGTGCTCC
CCAGTCTCGATCCTCTCGTGCGGGTCTCCAGATGTTCCCCGTCGGGCGTA
TCCACCGTTTCCTCAAGACCCGTGTGACGACGAGCCAGCGCGTGGGTGCC
ACCGCTGCTGTCTACACGGCCGCCATCCTGGAGTACCTGACGGCCGAGGT
CCTGGAGCTTGCCGGTAACGCCTGCAAGGACTTGAAGGTGAAGCGTATCA
CTCCCCGTCACTTGCAGCTCGCCATTCGTGGTGACGAGGAGCTGGACGCG
CTCATTAAGGCGACCATTGCCGGAGGTGGTGTCATCCCCCACATCCACAA
ATCTCTCATCACCAAGACCAAGGGCGCCAAGACCAAGTAATCTGGCGCAG
GCAAAGGTGCAGGGAAGGGCGGCAAGGCCGGGAAGGGAGGAAAGGGGGCC
AGTGGCAAGCGTGCTCCCCAGTCTCGATCCTCTCGTGCGGGTCTCCAGAT
G
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Synonyms
Publications