jgi.p|Nanoce1779_2|530689, mRNA_6989 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|530689
Unique Name	mRNA_6989
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	834
Alignment location	scaffold_17:632239..633844 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	530775
Track	FilteredModels2
ProteinId	530689

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_17	supercontig	scaffold_17:632239..633844 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|530689	gene_6989	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|530689	mRNA_6989-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6989	CDS_6989	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_17:632239..633844+
coding sequence from alignment at scaffold_17:632239..633844+

mRNA sequence

>mRNA_6989 ID=mRNA_6989|Name=jgi.p|Nanoce1779_2|530689|organism=Nannochloropsis oceanica|type=mRNA|length=834bp
ATGCTTAATCAACAGGATGACGCTGCCGTGGCGGAACAAGACCGCTTGAC
CATGGCTCAGCAAGAAGAGATAGAAAGTCAAATTGCAGCTACACAGCCTT
TGGTGGGGGCGCTGGAGCCACCATCCGTCTTGCTGCCCGATTACAAAGAT
AACCCTGCGAAAGGATTTGTAGCGGGCGTGGAGGACCTGGCGCAGCGGTA
CCGAATGATGCGGCGTGTCCGCGGGGATGGGAACTGCTTCTACCGTGCTT
TTTTGTTTGCCTACCTAGCTGGGCTGGTGGAGGGAGGGGTGGGGGAGGGA
GGGAAGAAAAAGAAAGAGTGGGATAAGCTGGCCAAGACGGTGAAGGATAG
CAAGGGATGGTTGGTGGAGGTGGGGTTTGAGGAGGTTGCTATTGACATGT
TCTGGGAGGTTTTTGTGGAAGAGCTGGAAGAGCTTCCCCAAAAGACACTC
GCCGATCTGGAGGCGACATTTAACGACCCTCACGGCGTGGCATCTTACAT
GGTCTGGTACTGCCGTCTCTTGACCGCAGGCTTTCTGAAGAAGCACCGGG
AGGAATACGAGGCTTTCCTGGATGGCCGCTACACCGACATGAACGACTTC
TGCGCCCGGGAAGTAGAGCCCGTAGGGAAGGAGTGCGAGGAACTGCAGAT
AGTGGCCTTGATGCGCGTTTTGGACGCCCAGGTCCATATCGAATACCTGG
ACGGGAGGCCTCTGCCGGATGGAGGGCATTTGCCTGTGCATGTCCTGCCG
GAGGGAGGGGGGGAGGGAGGGGGGGAGGGAGGGGGGGTAACGCTGTTGTA
CCGCCCAGGACATTATGACGTGTTGTCGGCGTGA

protein sequence of jgi.p|Nanoce1779_2|530689

>mRNA_6989-protein ID=mRNA_6989-protein|Name=jgi.p|Nanoce1779_2|530689|organism=Nannochloropsis oceanica|type=polypeptide|length=278bp
MLNQQDDAAVAEQDRLTMAQQEEIESQIAATQPLVGALEPPSVLLPDYKD
NPAKGFVAGVEDLAQRYRMMRRVRGDGNCFYRAFLFAYLAGLVEGGVGEG
GKKKKEWDKLAKTVKDSKGWLVEVGFEEVAIDMFWEVFVEELEELPQKTL
ADLEATFNDPHGVASYMVWYCRLLTAGFLKKHREEYEAFLDGRYTDMNDF
CAREVEPVGKECEELQIVALMRVLDAQVHIEYLDGRPLPDGGHLPVHVLP
EGGGEGGGEGGGVTLLYRPGHYDVLSA*

mRNA from alignment at scaffold_17:632239..633844+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6989 ID=mRNA_6989|Name=jgi.p|Nanoce1779_2|530689|organism=Nannochloropsis oceanica|type=mRNA|length=1606bp|location=Sequence derived from alignment at scaffold_17:632239..633844+ (Nannochloropsis oceanica)
ATGCTTAATCAACAGGATGACGCTGCCGTGGCGGAACAAGACCGCTTGAC
CATGGCTCAGCAAGAAGAGATAGAAAGTCAAATTGCAGCTACACAGCCTT
TGGTGGGGGCGCTGGAGCCACCATCCGTCTTGCTGCCCGATTACAAAGAT
AACCCTGCGAAAGGATTTGTAGCGGGCGTGGAGGACCTGGCGCAGCGGTA
CCGAATGATGCGGCGTGTCCGCGGGGATGGGAACTGCTTCTACCGTGCTT
TTTTGTTTGCCTACCTAGCTGGGCTGGTGGAGGGAGGGGTGGGGGAGGGA
GGGAAGAAAAAGAAAGAGTGGGATAAGCTGGCCAAGACGGTGAAGGATAG
CAAGGGATGGTTGGTGGAGGTGGGGTTTGAGGAGGTTGCTATTGACATGT
TCTGGGAGGTTTTTGTGGAAGAGGTAAGATGGGGAAAGGAGTTTGAAACT
CCCAACCAATAAGCAACCCACCACCCACTCACACACGGGTATACCCCTCC
CCTCGTTCCTCCCCACTCCCTCCCTCCTCTCCTCCCTCCTCCTCTCCCTC
CTTCCACCCCTCCTTCAGCTGGAAGAGCTTCCCCAAAAGACACTCGCCGA
TCTGGAGGCGACATTTAACGACCCTCACGGCGTGGCATCTTACATGGTCT
GGTACTGCCGTCTCTTGACCGCAGGCTTTCTGAAGAAGCACCGGGAGGAA
TACGAGGCTTTCCTGGATGGCCGGTAGGGAGGGAGGGAGGGAGGGAGGGA
GGGAGGGTGGGAAGAGCAAGGCATATCACCGGTTCTCAGAAGCGTCGACT
TGGTGAGAGGTAGAGAGAGACTGAAGAGGGTAGGTGTACGACGTAAGGAG
AGGATGTGAGCCAATTGCGTTACCGTGTACAAGCTCTTACCACTTTAGAC
ACCTACCTCTCTGTCTCTCTCTGTCTCTCTCTATCTGTCTGTCTCTTTCT
CTGTCTCTGTCCCTCTTTTATCTCCCTCTCTCTGTCTATCTCTGTCCCTC
TTTTTATCTTCCTCTCTGTCTCTCCCTGTCTCTCCCTGTCTCTCTCTGTC
TCTCTCTCTCTCTGTCTCTATGTCTTTGTCTCTGTCTCTCTTTTTATCTC
CCTCTCTCTGTCTCTCTTTTAATCTCCCTCTCTCTGTCTCTCTCTGTCTC
TCTCTGTCTCTCTCTGTCTCTCTTTTTATCTCTGTCTCTCTGTCTCTCTG
TCTCTCTGTCTCTCTCTCTCTCTCTCTTTTCATCTCTCTCTCTTTTCATC
TCTCTCTCATTTTCTCATCTCTCTCTCTCTTCATCTCCCTCTTCCTCTCT
CTCTCTGTCTCTGTCTCTATCTCTCTCTCTTCCTCACTCTCTCTTCACAG
CTACACCGACATGAACGACTTCTGCGCCCGGGAAGTAGAGCCCGTAGGGA
AGGAGTGCGAGGAACTGCAGATAGTGGCCTTGATGCGCGTTTTGGACGCC
CAGGTCCATATCGAATACCTGGACGGGAGGCCTCTGCCGGATGGAGGGCA
TTTGCCTGTGCATGTCCTGCCGGAGGGAGGGGGGGAGGGAGGGGGGGAGG
GAGGGGGGGTAACGCTGTTGTACCGCCCAGGACATTATGACGTGTTGTCG
GCGTGA

Coding sequence (CDS) from alignment at scaffold_17:632239..633844+

>mRNA_6989 ID=mRNA_6989|Name=jgi.p|Nanoce1779_2|530689|organism=Nannochloropsis oceanica|type=CDS|length=2502bp|location=Sequence derived from alignment at scaffold_17:632239..633844+ (Nannochloropsis oceanica)
ATGCTTAATCAACAGGATGACGCTGCCGTGGCGGAACAAGACCGCTTGAC
CATGGCTCAGCAAGAAGAGATAGAAAGTCAAATTGCAGCTACACAGCCTT
TGGTGGGGGCGCTGGAGCCACCATCCGTCTTGCTGCCCGATTACAAAGAT
AACCCTGCGAAAGGATTTGTAGCGGGCGTGGAGGACCTGGCGCAGCGGTA
CCGAATGATGCGGCGTGTCCGCGGGGATGGGAACTGCTTCTACCGTGCTT
TTTTGTTTGCCTACCTAGCTGGGCTGGTGGAGGGAGGGGTGGGGGAGGGA
GGGAAGAAAAAGAAAGAGTGGGATAAGCTGGCCAAGACGGTGAAGGATAG
CAAGGGATGGTTGGTGGAGGTGGGGTTTGAGGAGGTTGCTATTGACATGT
TCTGGGAGGTTTTTGTGGAAGAGCTGGAAGAGCTTCCCCAAAAGACACTC
GCCGATCTGGAGGCGACATTTAACGACCCTCACGGCGTGGCATCTTACAT
GGTCTGGTACTGCCGTCTCTTGACCGCAGGCTTTCTGAAGAAGCACCGGG
AGGAATACGAGGCTTTCCTGGATGGCCGCTACACCGACATGAACGACTTC
TGCGCCCGGGAAGTAGAGCCCGTAGGGAAGGAGTGCGAGGAACTGCAGAT
AGTGGCCTTGATGCGCGTTTTGGACGCCCAGGTCCATATCGAATACCTGG
ACGGGAGGCCTCTGCCGGATGGAGGGCATTTGCCTGTGCATGTCCTGCCG
GAGGGAGGGGGGGAGGGAGGGGGGGAGGGAGGGGGGGTAACGCTGTTGTA
CCGCCCAGGACATTATGACGTGTTGTCGGCGTGAATGCTTAATCAACAGG
ATGACGCTGCCGTGGCGGAACAAGACCGCTTGACCATGGCTCAGCAAGAA
GAGATAGAAAGTCAAATTGCAGCTACACAGCCTTTGGTGGGGGCGCTGGA
GCCACCATCCGTCTTGCTGCCCGATTACAAAGATAACCCTGCGAAAGGAT
TTGTAGCGGGCGTGGAGGACCTGGCGCAGCGGTACCGAATGATGCGGCGT
GTCCGCGGGGATGGGAACTGCTTCTACCGTGCTTTTTTGTTTGCCTACCT
AGCTGGGCTGGTGGAGGGAGGGGTGGGGGAGGGAGGGAAGAAAAAGAAAG
AGTGGGATAAGCTGGCCAAGACGGTGAAGGATAGCAAGGGATGGTTGGTG
GAGGTGGGGTTTGAGGAGGTTGCTATTGACATGTTCTGGGAGGTTTTTGT
GGAAGAGCTGGAAGAGCTTCCCCAAAAGACACTCGCCGATCTGGAGGCGA
CATTTAACGACCCTCACGGCGTGGCATCTTACATGGTCTGGTACTGCCGT
CTCTTGACCGCAGGCTTTCTGAAGAAGCACCGGGAGGAATACGAGGCTTT
CCTGGATGGCCGCTACACCGACATGAACGACTTCTGCGCCCGGGAAGTAG
AGCCCGTAGGGAAGGAGTGCGAGGAACTGCAGATAGTGGCCTTGATGCGC
GTTTTGGACGCCCAGGTCCATATCGAATACCTGGACGGGAGGCCTCTGCC
GGATGGAGGGCATTTGCCTGTGCATGTCCTGCCGGAGGGAGGGGGGGAGG
GAGGGGGGGAGGGAGGGGGGGTAACGCTGTTGTACCGCCCAGGACATTAT
GACGTGTTGTCGGCGTGAATGCTTAATCAACAGGATGACGCTGCCGTGGC
GGAACAAGACCGCTTGACCATGGCTCAGCAAGAAGAGATAGAAAGTCAAA
TTGCAGCTACACAGCCTTTGGTGGGGGCGCTGGAGCCACCATCCGTCTTG
CTGCCCGATTACAAAGATAACCCTGCGAAAGGATTTGTAGCGGGCGTGGA
GGACCTGGCGCAGCGGTACCGAATGATGCGGCGTGTCCGCGGGGATGGGA
ACTGCTTCTACCGTGCTTTTTTGTTTGCCTACCTAGCTGGGCTGGTGGAG
GGAGGGGTGGGGGAGGGAGGGAAGAAAAAGAAAGAGTGGGATAAGCTGGC
CAAGACGGTGAAGGATAGCAAGGGATGGTTGGTGGAGGTGGGGTTTGAGG
AGGTTGCTATTGACATGTTCTGGGAGGTTTTTGTGGAAGAGCTGGAAGAG
CTTCCCCAAAAGACACTCGCCGATCTGGAGGCGACATTTAACGACCCTCA
CGGCGTGGCATCTTACATGGTCTGGTACTGCCGTCTCTTGACCGCAGGCT
TTCTGAAGAAGCACCGGGAGGAATACGAGGCTTTCCTGGATGGCCGCTAC
ACCGACATGAACGACTTCTGCGCCCGGGAAGTAGAGCCCGTAGGGAAGGA
GTGCGAGGAACTGCAGATAGTGGCCTTGATGCGCGTTTTGGACGCCCAGG
TCCATATCGAATACCTGGACGGGAGGCCTCTGCCGGATGGAGGGCATTTG
CCTGTGCATGTCCTGCCGGAGGGAGGGGGGGAGGGAGGGGGGGAGGGAGG
GGGGGTAACGCTGTTGTACCGCCCAGGACATTATGACGTGTTGTCGGCGT
GA

Synonyms

Publications