jgi.p|Nanoce1779_2|567389, mRNA_6809 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|567389
Unique Name	mRNA_6809
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2031
Alignment location	scaffold_17:152399..154549 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	567475
Track	FilteredModels2
ProteinId	567389

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_17	supercontig	scaffold_17:152399..154549 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|567389	gene_6809	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|567389	mRNA_6809-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6809	CDS_6809	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_17:152399..154549+
coding sequence from alignment at scaffold_17:152399..154549+

mRNA sequence

>mRNA_6809 ID=mRNA_6809|Name=jgi.p|Nanoce1779_2|567389|organism=Nannochloropsis oceanica|type=mRNA|length=2031bp
ATGCGGCCGCTCCCACCCCTGCCATCGTCGGAGTCGTCATCGAACAAAAA
GGAGGCGACGGCCAGGACGTCAGCAAGCAGTCAAGACATCATTCTTTATG
AAGAAGAGGATACAGAGGACTGGGCGGCATTTATGGAGGAGTACGATGCG
CTGGGAGCAGAAGAAGGGGAGGTAGCAGCAGGGCTTGCCTCTCTTGGAAG
TGAAGGTCCGCTGGTGGTGGAGGAGTATCGAGTGGAAGAGGACGCGGAAG
GGGCCATGCGCATGGTGCAAAGCAATAAAGACAGGCAGCAGAATTATGGC
AAAGATTCCGTGAAAGCCTTGTTGCGGGAAACCCGTAAGAACGGCGCTAT
GACGGAGGACGATTGGTTCGAGTTCTTGCGCCGGGCGGGGATAGAACGTG
CAGGGGGAGGCAACGAACATCATGGCGCTTTCTCAGAGGACAGCGAGGAT
AGTGGAAAGAATAGGAAAGATCCCCCCCCCCTGCGACTTGGGCGACAGAC
ACGCAAAGGCCCGCCTAAATTTGTGGACCGGATTAGTGTGGTAGTTTCAG
GAGGCAAGGGTGGGAAGGGTTGTATTTCTTTTGAAACGATTGGTGCTGCC
TCCAAGCGTCCCTCTGGCGGGCATGGAGGACGAGGAGGGAACGTGATTTT
TGTGGCCGACCCACGCGTGCAGAGCTTGGAGATGGACCGCCATCACTTTC
ATGGCAAGCCTGGAGGGACGGGCGATTCCAAGAACCAGCGCGGGGCCCGT
GGTCGACACACGGTGGTGCGTGTACCGTGTGGGACGATTGTCAAGGAGGT
CTTGCGGCGCTGTGCCAATGGGTGCAATGGCAACTATTATGAGCGCGTCC
AAGTATGCGATCTGGACGAACCCCTCAGCTATTACACGGCGGCCACGGGC
GGAAAGCCAGGGCTAGGCAACTCAATACAGGCAGGGCGCGTGCGCAAAAC
CTCAGCGGCTTCGGGGAATTTCCGCGCGCCCGGACATCAGGGCGAAGAGC
GCTATTATGAACTGGAGCTCAAGACGATTGCCGACGTGGGGTTGGTTGGC
TATCCGAATGCAGGAAAGTCGACGCTGCTGGGGGGACTCTCGATGGCGCA
GCCTAAAGTGGCGGCTTACCCTTTCACGACGCTCCACCCGACGGTTGGTC
GCGTGGAGTACACGGATGCGGCGAGTCTGACAGTGGCAGATTTACCCGGA
TTGATTGAAGGGGCGCATGCCAATAAAGGGTTGGGGCATGAGTTTTTACG
ACACATTGAGCGAACTAAAGTGTTGTTGTATGTGCTTGATGGGATAGGTG
GGGAAGGACGAGGGGTAGCGGCAGGGGTGGAGGACGGGAGTGTCGTGGAG
GAGGCACCGGCCCATGTCTTGCGGAAATTGAAAGAGGAGCTGGAGCTGTA
TTGTCCAGGGTTATCGCGGCGTCCGTCGTTGGTTTGGCTTAACAAAGCGG
ATCTGAACTCTGATTGGGTGCAAGAGGCCAAATCAGCCGTGGAGGCTGTG
CTGAGAGAAGACGAAGTGGAAGTAGATGCTCGCAAAGACGCAGGTGACGT
AGAAGGGGTCATGACTCGGGATTGGAAAGTACCACCTATTTTGTGGGGGA
GTGCCTGCACTGGGGAACGCATTGGCGAGTTAGCACATGAGCTAAGGCGA
GCGGTGGAACTTGTCGCACTTGAAGAGGAAAATGTAAGAGGGATCAATGG
CCCGGGAAGCAATTGTAGTGGTAGTGGTAGTGGTAGTGATGGTGGAAGCC
GTGCGACAAAAGGCTCGGGTGATAATGTGGAAGAGGATGCTGCTTACGCC
GAGGGGATGTGCATCGCACATGCTTATTCCAAGGCCTTGGAAGAGTCTCA
AGCACGCAACACTGAGTGGATTTCAGGAATTCAGGGTGTCAGCGCAGCTG
TCATTCGCGCTCGGCGCTACGCCGCGGGCCTTGCTGTCACATATCGCCAG
AACTACTGGCTCACGGATGCGATTCACTCCGCCATGCAGGTGCAGCAGCC
GAAAGGCGGCACCGGTGAGCCGACGAAATGA

protein sequence of jgi.p|Nanoce1779_2|567389

>mRNA_6809-protein ID=mRNA_6809-protein|Name=jgi.p|Nanoce1779_2|567389|organism=Nannochloropsis oceanica|type=polypeptide|length=677bp
MRPLPPLPSSESSSNKKEATARTSASSQDIILYEEEDTEDWAAFMEEYDA
LGAEEGEVAAGLASLGSEGPLVVEEYRVEEDAEGAMRMVQSNKDRQQNYG
KDSVKALLRETRKNGAMTEDDWFEFLRRAGIERAGGGNEHHGAFSEDSED
SGKNRKDPPPLRLGRQTRKGPPKFVDRISVVVSGGKGGKGCISFETIGAA
SKRPSGGHGGRGGNVIFVADPRVQSLEMDRHHFHGKPGGTGDSKNQRGAR
GRHTVVRVPCGTIVKEVLRRCANGCNGNYYERVQVCDLDEPLSYYTAATG
GKPGLGNSIQAGRVRKTSAASGNFRAPGHQGEERYYELELKTIADVGLVG
YPNAGKSTLLGGLSMAQPKVAAYPFTTLHPTVGRVEYTDAASLTVADLPG
LIEGAHANKGLGHEFLRHIERTKVLLYVLDGIGGEGRGVAAGVEDGSVVE
EAPAHVLRKLKEELELYCPGLSRRPSLVWLNKADLNSDWVQEAKSAVEAV
LREDEVEVDARKDAGDVEGVMTRDWKVPPILWGSACTGERIGELAHELRR
AVELVALEEENVRGINGPGSNCSGSGSGSDGGSRATKGSGDNVEEDAAYA
EGMCIAHAYSKALEESQARNTEWISGIQGVSAAVIRARRYAAGLAVTYRQ
NYWLTDAIHSAMQVQQPKGGTGEPTK*

mRNA from alignment at scaffold_17:152399..154549+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6809 ID=mRNA_6809|Name=jgi.p|Nanoce1779_2|567389|organism=Nannochloropsis oceanica|type=mRNA|length=2151bp|location=Sequence derived from alignment at scaffold_17:152399..154549+ (Nannochloropsis oceanica)
ATGCGGCCGCTCCCACCCCTGCCATCGTCGGAGTCGTCATCGAACAAAAA
GGAGGCGACGGCCAGGACGTCAGCAAGCAGTCAAGACATCATTCTTTATG
AAGAAGAGGATACAGAGGACTGGGCGGCATTTATGGAGGAGTACGATGCG
CTGGGAGCAGAAGAAGGGGAGGTAGCAGCAGGGCTTGCCTCTCTTGGAAG
TGAAGGTCCGCTGGTGGTGGAGGAGTATCGAGTGGAAGAGGACGCGGAAG
GGGCCATGCGCATGGTGCAAAGCAATAAAGACAGGCAGCAGAATTATGGC
AAAGATTCCGTGAAAGCCTTGTTGCGGGAAACCCGTAAGAACGGCGCTAT
GACGGAGGACGATTGGTTCGAGTTCTTGCGCCGGGCGGGGATAGAACGTG
CAGGGGGAGGCAACGAACATCATGGCGCTTTCTCAGAGGACAGCGAGGAT
AGTGGAAAGAATAGGAAAGATCCCCCCCCCCTGCGACTTGGGCGACAGAC
ACGCAAAGGCCCGCCTAAATTTGTGGACCGGATTAGTGTGGTAGTTTCAG
GAGGCAAGGGTGGGAAGGGTTGTATTTCTTTTGAAACGATTGGTGCTGCC
TCCAAGCGTCCCTCTGGCGGGCATGGAGGACGAGGAGGGAACGTGATTTT
TGTGGCCGACCCACGCGTGCAGAGCTTGGAGATGGACCGCCATCACTTTC
ATGGCAAGCCTGGAGGGACGGGCGATTCCAAGAACCAGCGCGGGGCCCGT
GGTCGACACACGGTGGTGCGTGTACCGTGTGGGACGATTGTCAAGGAGGT
CTTGCGGCGCTGTGCCAATGGGTGCAATGGCAACTATTATGAGCGCGTCC
AAGTATGCGATCTGGACGAACCCCTCAGCTATTACACGGCGGCCACGGGC
GGAAAGCCAGGGCTAGGCAACTCAATACAGGCAGGGCGCGTGCGCAAAAC
CTCAGCGGCTTCGGGGAATTTCCGCGCGCCCGGACATCAGGGCGAAGAGC
GCTATTATGAACTGGAGCTCAAGACGATTGCCGACGTGGGGTTGGTTGGC
TATCCGAATGCAGGAAAGTCGACGCTGCTGGGGGGACTCTCGATGGCGCA
GCCTAAAGTGGCGGCTTACCCTTTCACGACGCTCCACCCGACGGTTGGTC
GCGTGGAGTACACGGATGCGGCGAGTCTGACAGTGGCAGATTTACCCGGA
TTGATTGAAGGGGCGCATGCCAATAAAGGGTTGGGGCATGAGTTTTTACG
ACACATTGAGCGAACTAAAGTGTTGTTGTATGTGCTTGATGGGATAGGTG
GGGAAGGACGAGGGGTAGCGGCAGGGGTGGAGGACGGGAGTGTCGTGGAG
GAGGCACCGGCCCATGTCTTGCGGAAATTGAAAGAGGAGCTGGAGCTGTA
TTGTCCAGGGTTATCGCGGCGTCCGTCGTTGGTTTGGCTTAACAAAGCGG
ATCTGAACTCTGATTGGGTGCAAGAGGCCAAATCAGCCGTGGAGGCTGTG
CTGAGAGAAGACGAAGTGGAAGTAGATGCTCGCAAAGACGCAGGTGACGT
AGAAGGGGTCATGACTCGGGATTGGAAAGTACCACCTATTTTGTGGGGGA
GTGCCTGCACTGGGGAACGCATTGGCGAGTTAGCACATGAGCTAAGGCGA
GCGGTGGAACTTGTCGCACTTGAAGAGGAAAATGTAAGAGGGATCAATGG
CCCGGGAAGCAATTGTAGTGGTAGTGGTAGTGGTAGTGATGGTGGAAGCC
GTGCGACAAAAGGCTCGGGTGATAATGGTAATCATTATCGGCAGCAGCTG
AGGCACGAGCAGCAGCAACAGCAACTACATCTGCCGCAGATGGGTGAGAT
CATGGTAGCGGTAGGTACCACAGAGGAAACTGCATCACTTCAAAGAGTGG
AAGAGGATGCTGCTTACGCCGAGGGGATGTGCATCGCACATGCTTATTCC
AAGGCCTTGGAAGAGTCTCAAGCACGCAACACTGAGTGGATTTCAGGAAT
TCAGGGTGTCAGCGCAGCTGTCATTCGCGCTCGGCGCTACGCCGCGGGCC
TTGCTGTCACATATCGCCAGAACTACTGGCTCACGGATGCGATTCACTCC
GCCATGCAGGTGCAGCAGCCGAAAGGCGGCACCGGTGAGCCGACGAAATG
A

Coding sequence (CDS) from alignment at scaffold_17:152399..154549+

>mRNA_6809 ID=mRNA_6809|Name=jgi.p|Nanoce1779_2|567389|organism=Nannochloropsis oceanica|type=CDS|length=4062bp|location=Sequence derived from alignment at scaffold_17:152399..154549+ (Nannochloropsis oceanica)
ATGCGGCCGCTCCCACCCCTGCCATCGTCGGAGTCGTCATCGAACAAAAA
GGAGGCGACGGCCAGGACGTCAGCAAGCAGTCAAGACATCATTCTTTATG
AAGAAGAGGATACAGAGGACTGGGCGGCATTTATGGAGGAGTACGATGCG
CTGGGAGCAGAAGAAGGGGAGGTAGCAGCAGGGCTTGCCTCTCTTGGAAG
TGAAGGTCCGCTGGTGGTGGAGGAGTATCGAGTGGAAGAGGACGCGGAAG
GGGCCATGCGCATGGTGCAAAGCAATAAAGACAGGCAGCAGAATTATGGC
AAAGATTCCGTGAAAGCCTTGTTGCGGGAAACCCGTAAGAACGGCGCTAT
GACGGAGGACGATTGGTTCGAGTTCTTGCGCCGGGCGGGGATAGAACGTG
CAGGGGGAGGCAACGAACATCATGGCGCTTTCTCAGAGGACAGCGAGGAT
AGTGGAAAGAATAGGAAAGATCCCCCCCCCCTGCGACTTGGGCGACAGAC
ACGCAAAGGCCCGCCTAAATTTGTGGACCGGATTAGTGTGGTAGTTTCAG
GAGGCAAGGGTGGGAAGGGTTGTATTTCTTTTGAAACGATTGGTGCTGCC
TCCAAGCGTCCCTCTGGCGGGCATGGAGGACGAGGAGGGAACGTGATTTT
TGTGGCCGACCCACGCGTGCAGAGCTTGGAGATGGACCGCCATCACTTTC
ATGGCAAGCCTGGAGGGACGGGCGATTCCAAGAACCAGCGCGGGGCCCGT
GGTCGACACACGGTGGTGCGTGTACCGTGTGGGACGATTGTCAAGGAGGT
CTTGCGGCGCTGTGCCAATGGGTGCAATGGCAACTATTATGAGCGCGTCC
AAGTATGCGATCTGGACGAACCCCTCAGCTATTACACGGCGGCCACGGGC
GGAAAGCCAGGGCTAGGCAACTCAATACAGGCAGGGCGCGTGCGCAAAAC
CTCAGCGGCTTCGGGGAATTTCCGCGCGCCCGGACATCAGGGCGAAGAGC
GCTATTATGAACTGGAGCTCAAGACGATTGCCGACGTGGGGTTGGTTGGC
TATCCGAATGCAGGAAAGTCGACGCTGCTGGGGGGACTCTCGATGGCGCA
GCCTAAAGTGGCGGCTTACCCTTTCACGACGCTCCACCCGACGGTTGGTC
GCGTGGAGTACACGGATGCGGCGAGTCTGACAGTGGCAGATTTACCCGGA
TTGATTGAAGGGGCGCATGCCAATAAAGGGTTGGGGCATGAGTTTTTACG
ACACATTGAGCGAACTAAAGTGTTGTTGTATGTGCTTGATGGGATAGGTG
GGGAAGGACGAGGGGTAGCGGCAGGGGTGGAGGACGGGAGTGTCGTGGAG
GAGGCACCGGCCCATGTCTTGCGGAAATTGAAAGAGGAGCTGGAGCTGTA
TTGTCCAGGGTTATCGCGGCGTCCGTCGTTGGTTTGGCTTAACAAAGCGG
ATCTGAACTCTGATTGGGTGCAAGAGGCCAAATCAGCCGTGGAGGCTGTG
CTGAGAGAAGACGAAGTGGAAGTAGATGCTCGCAAAGACGCAGGTGACGT
AGAAGGGGTCATGACTCGGGATTGGAAAGTACCACCTATTTTGTGGGGGA
GTGCCTGCACTGGGGAACGCATTGGCGAGTTAGCACATGAGCTAAGGCGA
GCGGTGGAACTTGTCGCACTTGAAGAGGAAAATGTAAGAGGGATCAATGG
CCCGGGAAGCAATTGTAGTGGTAGTGGTAGTGGTAGTGATGGTGGAAGCC
GTGCGACAAAAGGCTCGGGTGATAATGTGGAAGAGGATGCTGCTTACGCC
GAGGGGATGTGCATCGCACATGCTTATTCCAAGGCCTTGGAAGAGTCTCA
AGCACGCAACACTGAGTGGATTTCAGGAATTCAGGGTGTCAGCGCAGCTG
TCATTCGCGCTCGGCGCTACGCCGCGGGCCTTGCTGTCACATATCGCCAG
AACTACTGGCTCACGGATGCGATTCACTCCGCCATGCAGGTGCAGCAGCC
GAAAGGCGGCACCGGTGAGCCGACGAAATGAATGCGGCCGCTCCCACCCC
TGCCATCGTCGGAGTCGTCATCGAACAAAAAGGAGGCGACGGCCAGGACG
TCAGCAAGCAGTCAAGACATCATTCTTTATGAAGAAGAGGATACAGAGGA
CTGGGCGGCATTTATGGAGGAGTACGATGCGCTGGGAGCAGAAGAAGGGG
AGGTAGCAGCAGGGCTTGCCTCTCTTGGAAGTGAAGGTCCGCTGGTGGTG
GAGGAGTATCGAGTGGAAGAGGACGCGGAAGGGGCCATGCGCATGGTGCA
AAGCAATAAAGACAGGCAGCAGAATTATGGCAAAGATTCCGTGAAAGCCT
TGTTGCGGGAAACCCGTAAGAACGGCGCTATGACGGAGGACGATTGGTTC
GAGTTCTTGCGCCGGGCGGGGATAGAACGTGCAGGGGGAGGCAACGAACA
TCATGGCGCTTTCTCAGAGGACAGCGAGGATAGTGGAAAGAATAGGAAAG
ATCCCCCCCCCCTGCGACTTGGGCGACAGACACGCAAAGGCCCGCCTAAA
TTTGTGGACCGGATTAGTGTGGTAGTTTCAGGAGGCAAGGGTGGGAAGGG
TTGTATTTCTTTTGAAACGATTGGTGCTGCCTCCAAGCGTCCCTCTGGCG
GGCATGGAGGACGAGGAGGGAACGTGATTTTTGTGGCCGACCCACGCGTG
CAGAGCTTGGAGATGGACCGCCATCACTTTCATGGCAAGCCTGGAGGGAC
GGGCGATTCCAAGAACCAGCGCGGGGCCCGTGGTCGACACACGGTGGTGC
GTGTACCGTGTGGGACGATTGTCAAGGAGGTCTTGCGGCGCTGTGCCAAT
GGGTGCAATGGCAACTATTATGAGCGCGTCCAAGTATGCGATCTGGACGA
ACCCCTCAGCTATTACACGGCGGCCACGGGCGGAAAGCCAGGGCTAGGCA
ACTCAATACAGGCAGGGCGCGTGCGCAAAACCTCAGCGGCTTCGGGGAAT
TTCCGCGCGCCCGGACATCAGGGCGAAGAGCGCTATTATGAACTGGAGCT
CAAGACGATTGCCGACGTGGGGTTGGTTGGCTATCCGAATGCAGGAAAGT
CGACGCTGCTGGGGGGACTCTCGATGGCGCAGCCTAAAGTGGCGGCTTAC
CCTTTCACGACGCTCCACCCGACGGTTGGTCGCGTGGAGTACACGGATGC
GGCGAGTCTGACAGTGGCAGATTTACCCGGATTGATTGAAGGGGCGCATG
CCAATAAAGGGTTGGGGCATGAGTTTTTACGACACATTGAGCGAACTAAA
GTGTTGTTGTATGTGCTTGATGGGATAGGTGGGGAAGGACGAGGGGTAGC
GGCAGGGGTGGAGGACGGGAGTGTCGTGGAGGAGGCACCGGCCCATGTCT
TGCGGAAATTGAAAGAGGAGCTGGAGCTGTATTGTCCAGGGTTATCGCGG
CGTCCGTCGTTGGTTTGGCTTAACAAAGCGGATCTGAACTCTGATTGGGT
GCAAGAGGCCAAATCAGCCGTGGAGGCTGTGCTGAGAGAAGACGAAGTGG
AAGTAGATGCTCGCAAAGACGCAGGTGACGTAGAAGGGGTCATGACTCGG
GATTGGAAAGTACCACCTATTTTGTGGGGGAGTGCCTGCACTGGGGAACG
CATTGGCGAGTTAGCACATGAGCTAAGGCGAGCGGTGGAACTTGTCGCAC
TTGAAGAGGAAAATGTAAGAGGGATCAATGGCCCGGGAAGCAATTGTAGT
GGTAGTGGTAGTGGTAGTGATGGTGGAAGCCGTGCGACAAAAGGCTCGGG
TGATAATGTGGAAGAGGATGCTGCTTACGCCGAGGGGATGTGCATCGCAC
ATGCTTATTCCAAGGCCTTGGAAGAGTCTCAAGCACGCAACACTGAGTGG
ATTTCAGGAATTCAGGGTGTCAGCGCAGCTGTCATTCGCGCTCGGCGCTA
CGCCGCGGGCCTTGCTGTCACATATCGCCAGAACTACTGGCTCACGGATG
CGATTCACTCCGCCATGCAGGTGCAGCAGCCGAAAGGCGGCACCGGTGAG
CCGACGAAATGA

Synonyms

Publications