jgi.p|Nanoce1779_2|597314, mRNA_6547 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|597314
Unique NamemRNA_6547
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length696
Alignment locationscaffold_18:134389..135084 +

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Properties
Property NameValue
TranscriptId597400
TrackFilteredModels2
ProteinId597314
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:134389..135084 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597314gene_6547Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597314mRNA_6547-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6547CDS_6547Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6547 ID=mRNA_6547|Name=jgi.p|Nanoce1779_2|597314|organism=Nannochloropsis oceanica|type=mRNA|length=696bp
GGTGCCTGTGTGAGTGTGAATAATTGAGAATACGCTCAGGACGTAGAGCT
GAAAGGCCTTCAGCAGGAGGAGAAGGTGAGCAACGAAGCACGCATGCGCT
GGTGTTCGTGTTCTGCTTCAATCCACGCAAAGTCCCACCGCGGGGCTCCC
TCTCGATGAGCGTGTGGATGGAAGCCAAGCGATGGCCTGCGCCTCTCTCA
ACTCTCCTGGTATTGCTCACTGCCAAAGCCTTTACCCTTTATCAAACACC
TGGGAGGCATGCGCCGAGCTCGTCTGCAGTGGGTTGTGTGACTGACGGTG
GACAGGGTGCACCAAGGCCTTCGATGAGGAACGGAGGGCTCCCAAGCGTC
GCCCTCCTCCCTAACAGAAAGCATCCCGTATGCTTTGCCCCCATGTCCTC
TTGGATGAAAATCTTCTTGCCCTCCACCAGCATAACACAAACAGAAATAA
AGAGCTGATGTGCATTCGAGATTGAAATCTCGGAACTGCCTAAATTACAG
ACCCACACGCCCTTTCCCCTACCCACAGAAAGGAGAAGAAAAAGAAGTGA
GAGGCATCATGGCTTGCATCATCTTTCCCGATCAATTCACTCACCTGCCA
CCACCCACGACCACCTCCTCGCACTACACAGCACAGATATAATGTCTTCC
AAGCGTGGACGCGGTGGTACCACGGGCGCCAAGTTCCGTATGACCC
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protein sequence of jgi.p|Nanoce1779_2|597314

>mRNA_6547-protein ID=mRNA_6547-protein|Name=jgi.p|Nanoce1779_2|597314|organism=Nannochloropsis oceanica|type=polypeptide|length=101bp
MSVWMEAKRWPAPLSTLLVLLTAKAFTLYQTPGRHAPSSSAVGCVTDGGQ
GAPRPSMRNGGLPSVALLPNRKHPVCFAPMSSWMKIFLPSTSITQTEIKS
*
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mRNA from alignment at scaffold_18:134389..135084+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6547 ID=mRNA_6547|Name=jgi.p|Nanoce1779_2|597314|organism=Nannochloropsis oceanica|type=mRNA|length=696bp|location=Sequence derived from alignment at scaffold_18:134389..135084+ (Nannochloropsis oceanica)
GGTGCCTGTGTGAGTGTGAATAATTGAGAATACGCTCAGGACGTAGAGCT
GAAAGGCCTTCAGCAGGAGGAGAAGGTGAGCAACGAAGCACGCATGCGCT
GGTGTTCGTGTTCTGCTTCAATCCACGCAAAGTCCCACCGCGGGGCTCCC
TCTCGATGAGCGTGTGGATGGAAGCCAAGCGATGGCCTGCGCCTCTCTCA
ACTCTCCTGGTATTGCTCACTGCCAAAGCCTTTACCCTTTATCAAACACC
TGGGAGGCATGCGCCGAGCTCGTCTGCAGTGGGTTGTGTGACTGACGGTG
GACAGGGTGCACCAAGGCCTTCGATGAGGAACGGAGGGCTCCCAAGCGTC
GCCCTCCTCCCTAACAGAAAGCATCCCGTATGCTTTGCCCCCATGTCCTC
TTGGATGAAAATCTTCTTGCCCTCCACCAGCATAACACAAACAGAAATAA
AGAGCTGATGTGCATTCGAGATTGAAATCTCGGAACTGCCTAAATTACAG
ACCCACACGCCCTTTCCCCTACCCACAGAAAGGAGAAGAAAAAGAAGTGA
GAGGCATCATGGCTTGCATCATCTTTCCCGATCAATTCACTCACCTGCCA
CCACCCACGACCACCTCCTCGCACTACACAGCACAGATATAATGTCTTCC
AAGCGTGGACGCGGTGGTACCACGGGCGCCAAGTTCCGTATGACCC
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Coding sequence (CDS) from alignment at scaffold_18:134389..135084+

>mRNA_6547 ID=mRNA_6547|Name=jgi.p|Nanoce1779_2|597314|organism=Nannochloropsis oceanica|type=CDS|length=303bp|location=Sequence derived from alignment at scaffold_18:134389..135084+ (Nannochloropsis oceanica)
ATGAGCGTGTGGATGGAAGCCAAGCGATGGCCTGCGCCTCTCTCAACTCT
CCTGGTATTGCTCACTGCCAAAGCCTTTACCCTTTATCAAACACCTGGGA
GGCATGCGCCGAGCTCGTCTGCAGTGGGTTGTGTGACTGACGGTGGACAG
GGTGCACCAAGGCCTTCGATGAGGAACGGAGGGCTCCCAAGCGTCGCCCT
CCTCCCTAACAGAAAGCATCCCGTATGCTTTGCCCCCATGTCCTCTTGGA
TGAAAATCTTCTTGCCCTCCACCAGCATAACACAAACAGAAATAAAGAGC
TGA
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Synonyms
Publications