jgi.p|Nanoce1779_2|672412, mRNA_6499 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|672412
Unique Name	mRNA_6499
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2781
Alignment location	scaffold_18:32148..34928 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	672498
Track	FilteredModels2
ProteinId	672412

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_18	supercontig	scaffold_18:32148..34928 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|672412	gene_6499	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|672412	mRNA_6499-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6499	CDS_6499	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_18:32148..34928+
coding sequence from alignment at scaffold_18:32148..34928+

mRNA sequence

>mRNA_6499 ID=mRNA_6499|Name=jgi.p|Nanoce1779_2|672412|organism=Nannochloropsis oceanica|type=mRNA|length=2781bp
CAGACCTTTCTCTCTGACACAAGCAGCATGGCAAGAAGACCTGAACATTT
TAAAGCATAAGACCAAGGTGCGCTCTGAAGACGTACCCTCTCGGCCTCAA
GGATGCTGCGAGGCACGGGCGGCGGCAGCGGCGGTAACACGCCTACGCGC
GGCGAAAGGAGCAACAGCAGCAACCACGACGTGGAAATCGATGAGGAAGA
GCGGCAAGGTCTACTGCGCAGCAGCAGTTTACCTCAAATGACTTCTGCGT
CTTATCCTCCCCCGATTTCCACGGCTGCTGCCGCTGATGTTGCATCGGCT
GCGGCAACCAGGGTCTGCAACCGGACGAGTCGCACGCCAAAAACATTGCT
GCTTCTCCTAGGAATCGCGTTATTGGGGTATCCTTTTTTGGCTGACCATG
TCTATCTGTGGATGGTGACAAATGAGATCAGCGTGATGCTCATGCCCGCC
TCCCGGCGTTCCTGTGTGTACCCGGCGTTGTCGGTCCCGTTTGAGGAGGC
TATAAGCCTCACTGCGTCTCTTCCTCCCACCGCGTCCTTATTGTCTTCTT
CCCCTACTCAACCCCCCTCTCGCCGTCACACTGATGCCACTATCACCCAA
CCTGCTGCTGCCACTGCTGACCCTGCTGCCGATACCGAGGAACCACCCAT
TTCCTCCACCACCACCAGTACCTCCACCTCCTCCTCCTTATCCACCATCG
ACCTAACCTCAGCAATGCCAACGACGATCTCGGATGATTTCCTAGCTAAT
GCAAGCAATACCACGACAGCGGCAGTCTCAGGCACACAACCGCCGTCATC
GCCACTAAAGGCAAGCATTACCCTTGTCGCTGTTATGGACCGTCGCCCGG
ACTCCGACCTCGCAGGTAGCAACACCCCCACATTTAAACGGTTGAGCAAC
AAATTAATGTCTCAATCCCTCGAGCAACAGCGAGCATATGCGTCCTTTTG
GGGTTATGACCACTTATTGTGGGAAGGACAAGAGGAGGAAAATGCAAATT
TGTTAGGAGGGAGGCCGGTGGCGTGGGGGAAGCTGCTGGCGCTGCAGCAA
GCCTTGGAAAATTATGATTACGCTCTTTATCTTGATCTAGACATAGCGAT
CATACAGCCGCTGCTGAGCCTGGAGGGGTATGTGGGGAGGTTGGAGGGGG
AAGAGAAGGATTTCATGGTTGCGGAGGACGGGAACGGGGTGAACACGGGG
GTGATGTTGGTACGAAAGAGTGAATGGAGTAAGTGGTTTTTAAGAGAACT
CTGGCGGGTGGGCGAAAGTCTCGTCACGTGCGATTGTATTTTTTACTACG
AACAACGGGCATTCCACCATGCCCTGCAAACGGAGCAGTGGCAGAAAGGG
TTAAGGTGGTGGACTCGTCACATCCCTCTGGTGGGTTGGTTCCAAAACCC
CCTCCGGGGGCACCCTCCCGGCCCCTCCCTCCAGACCCTCCCTCTCTTCC
ACCCAAACCACACCCCCGTGGCCTCCTCCGAAGAGATCTGGCAGCACGTT
GAAATTGCCCCGCAATGCGCTTTTAATGCGGTCGACTCGTTGACCGACAG
TGAGTTTATCGTCCACTTCGCGGGACAGAAAGGGAGGAGGAAAGAGAAGT
TGATGGATCACTATGGCAAGATTGCCCAGGACGTATTGGAAAATGTGGCA
AATCCCCTGAGGGAACGATTGAGGGACGGAGGGAGGGAAGGAGGGGGTTT
GCCTGTGGTGCATCAGACGTGGAAGACGCATGTGCTGGAGGGTGCGAAAT
TAGCGTGGCATATGTCGTGGCGTCGGAATGGCTTTAGGGTTCAATTGAGG
AATGACACGGAATGCCTTGATGATATAGAGAGATTGTGTCTAGTGACGGG
GGAGACGGACTACATGCGTGTGTACAGCAGTTTGAATCCGGTGCAACGGG
CGGACTTTTGGCGCTATGCAATTACGTGGCTAGAGGGAGGGATCTACGCC
GATATTGATATTGGAGCCACGCCAGAGACGGCTAGGTTTTTCATGGAGCG
ATGGCAAGGAGGGGGGGAAAGGGGAGGAGAGGGGGGAGGGAAGAAGGCGG
GGACGGCCTTGGTGGGCATAATTGAAAATGTCCCTTATGATAATTTTTTG
GGGCGTATGCATTGGAAAGGAGGGATGAGTCCGATGTATAGTCGTCTTCC
GCAGTTGAGGCAGTCATTTTTTTATGCCCGCAAAGGACATCCAGGGCTGC
TCAGATTGATGGATGGGATTAGAGCAATGGTGAGGAGGTGGGAGGAGAGT
GGGCACACGGACCTAGGGAGGGCTTGGCCGAAACTGAGTGCGAAGGAACT
GAGGGAGATGGAGGCAAGTGGAGCTTTGACGCTAGAAATGACTGGCCCGG
GAGTATGGACTGATTACATGCTGACACCTTTATTGCATAAGAAGGGCAGG
GCAAGGAGGAGGGAGGGAGGGGAGGAAGGAGAGGAAGAGTTGGAGGCATT
GAGAGCCTCGTCAGTGGTTTTGGGGACAATGGAGGGATATAGCCTCATTA
GGTATGGAAGCATGGGGTCGTGGAAGACGGATGCCCACAAGGCGGATTCA
CGGATGTGGCGGAACCTTCTGCTCTTTTATTTGAGTCCGCTGCTTTTGGC
GCTGTCGGTGCGTTGTCTGCGCCGGCGACAACGTAGGGGGATCGAGGCGA
AACGGAGGGCGAGGGAGGGAGGGGGGAATGGGTTGAATGGGGGAGGGGGG
ATCAGCATGGTGGGTTTAGGGATCGCTGATGGAGGGAGTGGTGGCCTGCC
GATGACAGCGGACCGGAACAAGGTCCATTGA

protein sequence of jgi.p|Nanoce1779_2|672412

>mRNA_6499-protein ID=mRNA_6499-protein|Name=jgi.p|Nanoce1779_2|672412|organism=Nannochloropsis oceanica|type=polypeptide|length=893bp
MLRGTGGGSGGNTPTRGERSNSSNHDVEIDEEERQGLLRSSSLPQMTSAS
YPPPISTAAAADVASAAATRVCNRTSRTPKTLLLLLGIALLGYPFLADHV
YLWMVTNEISVMLMPASRRSCVYPALSVPFEEAISLTASLPPTASLLSSS
PTQPPSRRHTDATITQPAAATADPAADTEEPPISSTTTSTSTSSSLSTID
LTSAMPTTISDDFLANASNTTTAAVSGTQPPSSPLKASITLVAVMDRRPD
SDLAGSNTPTFKRLSNKLMSQSLEQQRAYASFWGYDHLLWEGQEEENANL
LGGRPVAWGKLLALQQALENYDYALYLDLDIAIIQPLLSLEGYVGRLEGE
EKDFMVAEDGNGVNTGVMLVRKSEWSKWFLRELWRVGESLVTCDCIFYYE
QRAFHHALQTEQWQKGLRWWTRHIPLVGWFQNPLRGHPPGPSLQTLPLFH
PNHTPVASSEEIWQHVEIAPQCAFNAVDSLTDSEFIVHFAGQKGRRKEKL
MDHYGKIAQDVLENVANPLRERLRDGGREGGGLPVVHQTWKTHVLEGAKL
AWHMSWRRNGFRVQLRNDTECLDDIERLCLVTGETDYMRVYSSLNPVQRA
DFWRYAITWLEGGIYADIDIGATPETARFFMERWQGGGERGGEGGGKKAG
TALVGIIENVPYDNFLGRMHWKGGMSPMYSRLPQLRQSFFYARKGHPGLL
RLMDGIRAMVRRWEESGHTDLGRAWPKLSAKELREMEASGALTLEMTGPG
VWTDYMLTPLLHKKGRARRREGGEEGEEELEALRASSVVLGTMEGYSLIR
YGSMGSWKTDAHKADSRMWRNLLLFYLSPLLLALSVRCLRRRQRRGIEAK
RRAREGGGNGLNGGGGISMVGLGIADGGSGGLPMTADRNKVH*

mRNA from alignment at scaffold_18:32148..34928+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6499 ID=mRNA_6499|Name=jgi.p|Nanoce1779_2|672412|organism=Nannochloropsis oceanica|type=mRNA|length=2781bp|location=Sequence derived from alignment at scaffold_18:32148..34928+ (Nannochloropsis oceanica)
CAGACCTTTCTCTCTGACACAAGCAGCATGGCAAGAAGACCTGAACATTT
TAAAGCATAAGACCAAGGTGCGCTCTGAAGACGTACCCTCTCGGCCTCAA
GGATGCTGCGAGGCACGGGCGGCGGCAGCGGCGGTAACACGCCTACGCGC
GGCGAAAGGAGCAACAGCAGCAACCACGACGTGGAAATCGATGAGGAAGA
GCGGCAAGGTCTACTGCGCAGCAGCAGTTTACCTCAAATGACTTCTGCGT
CTTATCCTCCCCCGATTTCCACGGCTGCTGCCGCTGATGTTGCATCGGCT
GCGGCAACCAGGGTCTGCAACCGGACGAGTCGCACGCCAAAAACATTGCT
GCTTCTCCTAGGAATCGCGTTATTGGGGTATCCTTTTTTGGCTGACCATG
TCTATCTGTGGATGGTGACAAATGAGATCAGCGTGATGCTCATGCCCGCC
TCCCGGCGTTCCTGTGTGTACCCGGCGTTGTCGGTCCCGTTTGAGGAGGC
TATAAGCCTCACTGCGTCTCTTCCTCCCACCGCGTCCTTATTGTCTTCTT
CCCCTACTCAACCCCCCTCTCGCCGTCACACTGATGCCACTATCACCCAA
CCTGCTGCTGCCACTGCTGACCCTGCTGCCGATACCGAGGAACCACCCAT
TTCCTCCACCACCACCAGTACCTCCACCTCCTCCTCCTTATCCACCATCG
ACCTAACCTCAGCAATGCCAACGACGATCTCGGATGATTTCCTAGCTAAT
GCAAGCAATACCACGACAGCGGCAGTCTCAGGCACACAACCGCCGTCATC
GCCACTAAAGGCAAGCATTACCCTTGTCGCTGTTATGGACCGTCGCCCGG
ACTCCGACCTCGCAGGTAGCAACACCCCCACATTTAAACGGTTGAGCAAC
AAATTAATGTCTCAATCCCTCGAGCAACAGCGAGCATATGCGTCCTTTTG
GGGTTATGACCACTTATTGTGGGAAGGACAAGAGGAGGAAAATGCAAATT
TGTTAGGAGGGAGGCCGGTGGCGTGGGGGAAGCTGCTGGCGCTGCAGCAA
GCCTTGGAAAATTATGATTACGCTCTTTATCTTGATCTAGACATAGCGAT
CATACAGCCGCTGCTGAGCCTGGAGGGGTATGTGGGGAGGTTGGAGGGGG
AAGAGAAGGATTTCATGGTTGCGGAGGACGGGAACGGGGTGAACACGGGG
GTGATGTTGGTACGAAAGAGTGAATGGAGTAAGTGGTTTTTAAGAGAACT
CTGGCGGGTGGGCGAAAGTCTCGTCACGTGCGATTGTATTTTTTACTACG
AACAACGGGCATTCCACCATGCCCTGCAAACGGAGCAGTGGCAGAAAGGG
TTAAGGTGGTGGACTCGTCACATCCCTCTGGTGGGTTGGTTCCAAAACCC
CCTCCGGGGGCACCCTCCCGGCCCCTCCCTCCAGACCCTCCCTCTCTTCC
ACCCAAACCACACCCCCGTGGCCTCCTCCGAAGAGATCTGGCAGCACGTT
GAAATTGCCCCGCAATGCGCTTTTAATGCGGTCGACTCGTTGACCGACAG
TGAGTTTATCGTCCACTTCGCGGGACAGAAAGGGAGGAGGAAAGAGAAGT
TGATGGATCACTATGGCAAGATTGCCCAGGACGTATTGGAAAATGTGGCA
AATCCCCTGAGGGAACGATTGAGGGACGGAGGGAGGGAAGGAGGGGGTTT
GCCTGTGGTGCATCAGACGTGGAAGACGCATGTGCTGGAGGGTGCGAAAT
TAGCGTGGCATATGTCGTGGCGTCGGAATGGCTTTAGGGTTCAATTGAGG
AATGACACGGAATGCCTTGATGATATAGAGAGATTGTGTCTAGTGACGGG
GGAGACGGACTACATGCGTGTGTACAGCAGTTTGAATCCGGTGCAACGGG
CGGACTTTTGGCGCTATGCAATTACGTGGCTAGAGGGAGGGATCTACGCC
GATATTGATATTGGAGCCACGCCAGAGACGGCTAGGTTTTTCATGGAGCG
ATGGCAAGGAGGGGGGGAAAGGGGAGGAGAGGGGGGAGGGAAGAAGGCGG
GGACGGCCTTGGTGGGCATAATTGAAAATGTCCCTTATGATAATTTTTTG
GGGCGTATGCATTGGAAAGGAGGGATGAGTCCGATGTATAGTCGTCTTCC
GCAGTTGAGGCAGTCATTTTTTTATGCCCGCAAAGGACATCCAGGGCTGC
TCAGATTGATGGATGGGATTAGAGCAATGGTGAGGAGGTGGGAGGAGAGT
GGGCACACGGACCTAGGGAGGGCTTGGCCGAAACTGAGTGCGAAGGAACT
GAGGGAGATGGAGGCAAGTGGAGCTTTGACGCTAGAAATGACTGGCCCGG
GAGTATGGACTGATTACATGCTGACACCTTTATTGCATAAGAAGGGCAGG
GCAAGGAGGAGGGAGGGAGGGGAGGAAGGAGAGGAAGAGTTGGAGGCATT
GAGAGCCTCGTCAGTGGTTTTGGGGACAATGGAGGGATATAGCCTCATTA
GGTATGGAAGCATGGGGTCGTGGAAGACGGATGCCCACAAGGCGGATTCA
CGGATGTGGCGGAACCTTCTGCTCTTTTATTTGAGTCCGCTGCTTTTGGC
GCTGTCGGTGCGTTGTCTGCGCCGGCGACAACGTAGGGGGATCGAGGCGA
AACGGAGGGCGAGGGAGGGAGGGGGGAATGGGTTGAATGGGGGAGGGGGG
ATCAGCATGGTGGGTTTAGGGATCGCTGATGGAGGGAGTGGTGGCCTGCC
GATGACAGCGGACCGGAACAAGGTCCATTGA

Coding sequence (CDS) from alignment at scaffold_18:32148..34928+

>mRNA_6499 ID=mRNA_6499|Name=jgi.p|Nanoce1779_2|672412|organism=Nannochloropsis oceanica|type=CDS|length=2679bp|location=Sequence derived from alignment at scaffold_18:32148..34928+ (Nannochloropsis oceanica)
ATGCTGCGAGGCACGGGCGGCGGCAGCGGCGGTAACACGCCTACGCGCGG
CGAAAGGAGCAACAGCAGCAACCACGACGTGGAAATCGATGAGGAAGAGC
GGCAAGGTCTACTGCGCAGCAGCAGTTTACCTCAAATGACTTCTGCGTCT
TATCCTCCCCCGATTTCCACGGCTGCTGCCGCTGATGTTGCATCGGCTGC
GGCAACCAGGGTCTGCAACCGGACGAGTCGCACGCCAAAAACATTGCTGC
TTCTCCTAGGAATCGCGTTATTGGGGTATCCTTTTTTGGCTGACCATGTC
TATCTGTGGATGGTGACAAATGAGATCAGCGTGATGCTCATGCCCGCCTC
CCGGCGTTCCTGTGTGTACCCGGCGTTGTCGGTCCCGTTTGAGGAGGCTA
TAAGCCTCACTGCGTCTCTTCCTCCCACCGCGTCCTTATTGTCTTCTTCC
CCTACTCAACCCCCCTCTCGCCGTCACACTGATGCCACTATCACCCAACC
TGCTGCTGCCACTGCTGACCCTGCTGCCGATACCGAGGAACCACCCATTT
CCTCCACCACCACCAGTACCTCCACCTCCTCCTCCTTATCCACCATCGAC
CTAACCTCAGCAATGCCAACGACGATCTCGGATGATTTCCTAGCTAATGC
AAGCAATACCACGACAGCGGCAGTCTCAGGCACACAACCGCCGTCATCGC
CACTAAAGGCAAGCATTACCCTTGTCGCTGTTATGGACCGTCGCCCGGAC
TCCGACCTCGCAGGTAGCAACACCCCCACATTTAAACGGTTGAGCAACAA
ATTAATGTCTCAATCCCTCGAGCAACAGCGAGCATATGCGTCCTTTTGGG
GTTATGACCACTTATTGTGGGAAGGACAAGAGGAGGAAAATGCAAATTTG
TTAGGAGGGAGGCCGGTGGCGTGGGGGAAGCTGCTGGCGCTGCAGCAAGC
CTTGGAAAATTATGATTACGCTCTTTATCTTGATCTAGACATAGCGATCA
TACAGCCGCTGCTGAGCCTGGAGGGGTATGTGGGGAGGTTGGAGGGGGAA
GAGAAGGATTTCATGGTTGCGGAGGACGGGAACGGGGTGAACACGGGGGT
GATGTTGGTACGAAAGAGTGAATGGAGTAAGTGGTTTTTAAGAGAACTCT
GGCGGGTGGGCGAAAGTCTCGTCACGTGCGATTGTATTTTTTACTACGAA
CAACGGGCATTCCACCATGCCCTGCAAACGGAGCAGTGGCAGAAAGGGTT
AAGGTGGTGGACTCGTCACATCCCTCTGGTGGGTTGGTTCCAAAACCCCC
TCCGGGGGCACCCTCCCGGCCCCTCCCTCCAGACCCTCCCTCTCTTCCAC
CCAAACCACACCCCCGTGGCCTCCTCCGAAGAGATCTGGCAGCACGTTGA
AATTGCCCCGCAATGCGCTTTTAATGCGGTCGACTCGTTGACCGACAGTG
AGTTTATCGTCCACTTCGCGGGACAGAAAGGGAGGAGGAAAGAGAAGTTG
ATGGATCACTATGGCAAGATTGCCCAGGACGTATTGGAAAATGTGGCAAA
TCCCCTGAGGGAACGATTGAGGGACGGAGGGAGGGAAGGAGGGGGTTTGC
CTGTGGTGCATCAGACGTGGAAGACGCATGTGCTGGAGGGTGCGAAATTA
GCGTGGCATATGTCGTGGCGTCGGAATGGCTTTAGGGTTCAATTGAGGAA
TGACACGGAATGCCTTGATGATATAGAGAGATTGTGTCTAGTGACGGGGG
AGACGGACTACATGCGTGTGTACAGCAGTTTGAATCCGGTGCAACGGGCG
GACTTTTGGCGCTATGCAATTACGTGGCTAGAGGGAGGGATCTACGCCGA
TATTGATATTGGAGCCACGCCAGAGACGGCTAGGTTTTTCATGGAGCGAT
GGCAAGGAGGGGGGGAAAGGGGAGGAGAGGGGGGAGGGAAGAAGGCGGGG
ACGGCCTTGGTGGGCATAATTGAAAATGTCCCTTATGATAATTTTTTGGG
GCGTATGCATTGGAAAGGAGGGATGAGTCCGATGTATAGTCGTCTTCCGC
AGTTGAGGCAGTCATTTTTTTATGCCCGCAAAGGACATCCAGGGCTGCTC
AGATTGATGGATGGGATTAGAGCAATGGTGAGGAGGTGGGAGGAGAGTGG
GCACACGGACCTAGGGAGGGCTTGGCCGAAACTGAGTGCGAAGGAACTGA
GGGAGATGGAGGCAAGTGGAGCTTTGACGCTAGAAATGACTGGCCCGGGA
GTATGGACTGATTACATGCTGACACCTTTATTGCATAAGAAGGGCAGGGC
AAGGAGGAGGGAGGGAGGGGAGGAAGGAGAGGAAGAGTTGGAGGCATTGA
GAGCCTCGTCAGTGGTTTTGGGGACAATGGAGGGATATAGCCTCATTAGG
TATGGAAGCATGGGGTCGTGGAAGACGGATGCCCACAAGGCGGATTCACG
GATGTGGCGGAACCTTCTGCTCTTTTATTTGAGTCCGCTGCTTTTGGCGC
TGTCGGTGCGTTGTCTGCGCCGGCGACAACGTAGGGGGATCGAGGCGAAA
CGGAGGGCGAGGGAGGGAGGGGGGAATGGGTTGAATGGGGGAGGGGGGAT
CAGCATGGTGGGTTTAGGGATCGCTGATGGAGGGAGTGGTGGCCTGCCGA
TGACAGCGGACCGGAACAAGGTCCATTGA

Synonyms

Publications