jgi.p|Nanoce1779_2|574191, mRNA_802 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|574191
Unique Name	mRNA_802
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1814
Alignment location	scaffold_2:465346..467375 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	574277
Track	FilteredModels2
ProteinId	574191

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:465346..467375 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574191	gene_802	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574191	mRNA_802-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_802	CDS_802	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:465346..467375+
coding sequence from alignment at scaffold_2:465346..467375+

mRNA sequence

>mRNA_802 ID=mRNA_802|Name=jgi.p|Nanoce1779_2|574191|organism=Nannochloropsis oceanica|type=mRNA|length=1814bp
CAGGCCGCCCTTTCTGGTGCATCTGCCAAGTCAAGTGGTCCATCAATTCT
TCGCATCTAATACCGCGCCCCACAGAGCCCATCTCGAACAACAATCATGA
AGTTCACGACCTGCCTCGCGCTCGCCATGTGCATGGCATCAGCCTCCACC
TCGGCTTCCTTCTTTCCCAGCACAAACACAAAAAAGCAAACAATGAGCGT
ACCCCCCCCGGCTCGCCGTCTCCTGACCAAGGTCCGCGGTGGGAGCGACT
CGTCCATTGTCGTCCAGCCCCTCATGAAAGCCCCCGCTGAAGCCTACAAG
ACCGTCCTAACCCTTGGTATCAAGAAAGCCAACCAACCGGCCAGTAAGAT
ATTGTTGCTCGGCCTCGTCGCGGGAATGCAGGTCGGAATCGGCGCTGCCA
TGGCCGTGGCGACTCTGGGTGGGGTGCCTCTGCTCCAAGAGCAAAACCCA
GCGCTCGCCAAAGTCCTGTTTGGTATTGTCGGCCTCCCGTGCTCCCTCCT
CCTGGTTGTAGCCACAGGCTCGGAGCTGTTTACCGGGAATACCGCGATGG
TCGGCACAGCATTTTTCGAAGGTAAAGTCTCGCGACAGCAGCTGGCCAAA
TCGTGGGGATGCTCTTACCTGGGTAACCTGTTGGGGGCGTCTTTCCTCGC
CATCCTATGCAATTATGCCGGAGTCTTTTCGCAAGCTGCGGGCACCTTTA
CGGCGGTGGCAGATGCAAAGGCTTCCCTGCCGTTTGGTGTGGCGGTTGCG
AGGGGCATTGTGTGTAACTGGCTGGTCTGCAGCGCCGTGTGGTGCTCCAC
TGCCGCGGCTGATTTGGTGTCTAAGGCGGTGGCGATTCTGATGATCATCA
CGATTTTTGCGGCGCTCGGTTTTGAGCATTCGATTGCCAATATGTTTGTG
GGACCATTTGGGGCGTTACAGAAGAGCTCGCGCACGAGCTTTCTCAAGTT
CTTCTTCAAGAACCTGGTGCCCGTCACGATTGGCAACATCATCGGCGGCT
CGTTATTGATGGCAGGAACGCAGCACCTTGCTTTCGGGGGCAAGAACATG
GTGAGCCCACCCTCCTCTTCCTCGGATAAGAAGCGGGAGTGAATCGGTGA
CCCTGATGGGGGGCAAACAGAAGAAGAAAACTGCCAAGACGATAACAGCA
GCACCAGTAGCAGCAGTAGCAGCGAGCAGGGAATATCGGTTTGGGGCTCC
AGGGAGGAAGGGAGTGGAGGTGAAGAAAATGGTTGGGGCTTGGGGAGGGA
CACGCTGAAGCACGAAGGGGTAGTAGAGCCCCCGCCCTTGTCACAGTTGC
ATTCTCCTTCGACCTCCTCATCTCTTCCTGATTTTCAAGGAACAGCGCAA
TTTTAGCAACGAACGAAGGAGACGGAGCGGAATGACAACGATGAGAGGGA
CCAGCAGGGGGGGCAGGGAGTGAATGAGGGAAGGAAGCAGATAACAAAAT
ATAGAGGGCGCCGAGTTTTATTAAAAATGTATTAATAGCCCCTAGATAGT
GAGTGAGTAGCGGTAATCTATATGCCTGTGGTGCTTGACGAGTGTGTGTG
TACGTGTGCGTAACTCTGTGTGTCTCTGACCGAGAATTAGAAAATGAGAA
AATTGCGCGAGCGTCTGGGTGTTTTTAGTGTGCGTGTGTGTGTTGTGCCT
GTCGATGACTCGCTTTCTGTCTCAGTGTGTTGTGATGACCTTATCGTTAA
CTTAAGTGTATGTGTGTGTTGTGCCTGTCGATGACTCGCTATCTGTGTCT
GAGTATTGTGATGATCATCTGGTGGTTCACTTTAGTGTTTGTGTGAATGT
TATGCCTGTCGATG

protein sequence of jgi.p|Nanoce1779_2|574191

>mRNA_802-protein ID=mRNA_802-protein|Name=jgi.p|Nanoce1779_2|574191|organism=Nannochloropsis oceanica|type=polypeptide|length=332bp
MKFTTCLALAMCMASASTSASFFPSTNTKKQTMSVPPPARRLLTKVRGGS
DSSIVVQPLMKAPAEAYKTVLTLGIKKANQPASKILLLGLVAGMQVGIGA
AMAVATLGGVPLLQEQNPALAKVLFGIVGLPCSLLLVVATGSELFTGNTA
MVGTAFFEGKVSRQQLAKSWGCSYLGNLLGASFLAILCNYAGVFSQAAGT
FTAVADAKASLPFGVAVARGIVCNWLVCSAVWCSTAAADLVSKAVAILMI
ITIFAALGFEHSIANMFVGPFGALQKSSRTSFLKFFFKNLVPVTIGNIIG
GSLLMAGTQHLAFGGKNMVSPPSSSSDKKRE*

mRNA from alignment at scaffold_2:465346..467375+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_802 ID=mRNA_802|Name=jgi.p|Nanoce1779_2|574191|organism=Nannochloropsis oceanica|type=mRNA|length=2030bp|location=Sequence derived from alignment at scaffold_2:465346..467375+ (Nannochloropsis oceanica)
CAGGCCGCCCTTTCTGGTGCATCTGCCAAGTCAAGTGGTCCATCAATTCT
TCGCATCTAATACCGCGCCCCACAGAGCCCATCTCGAACAACAATCATGA
AGTTCACGACCTGCCTCGGTACGTATGCCGACCTTTAAGTTAGGGCATGT
ATCTGACATATTTGCCTTAATCTCTGGGCTCGGACGAAGCTCACTCCATC
CCACAATCCTCCCGACAGCGCTCGCCATGTGCATGGCATCAGCCTCCACC
TCGGCTTCCTTCTTTCCCAGCACAAACACAAAAAAGCAAACAATGAGCGT
ACCCCCCCCGGCTCGCCGTCTCCTGACCAAGGTCCGCGGTGGGAGCGACT
CGTCCATTGTCGTCCAGCCCCTCATGAAAGCCCCCGCTGAAGCCTACAAG
ACCGTCCTAACCCTTGGTATCAAGAAAGCCAACCAACCGGCCAGTAAGAT
ATTGTTGCTCGGCCTCGTCGCGGGAATGCAGGTCGGAATCGGCGCTGCCA
TGGCCGTGGCGACTCTGGGTGGGGTGCCTCTGCTCCAAGAGCAAAACCCA
GCGCTCGCCAAAGTCCTGTTTGGTATTGTCGGCCTCCCGTGCTCCCTCCT
CCTGGTTGTAGCCACAGGCTCGGAGCTGTTTACCGGGAATACCGCGATGG
TCGGCACAGCATTTTTCGAAGGTAAAGTCTCGCGACAGCAGCTGGCCAAA
TCGTGGGGATGCTCTTACCTGGGTAACCTGTTGGGGGCGTCTTTCCTCGC
CATCCTATGCAATTATGCCGGAGTCTTTTCGCAAGCTGCGGGCACCTTTA
CGGCGGTGGCAGATGCAAAGGCTTCCCTGCCGTTTGGTGTGGCGGTTGCG
AGGGGCATTGTGTGTAACTGGCTGGTCTGCAGCGCCGTGTGGTGCTCCAC
TGCCGCGGCTGATTTGGTGTCTAAGGCGGTGGCGATTCTGATGATCATCA
CGATTTTTGCGGCGCTCGGTTTTGAGCATTCGATTGCCAATATGTTTGTG
GGACCATTTGGGGCGTTACAGAAGAGCTCGCGCACGAGCTTTCTCAAGTT
CTTCTTCAAGAACCTGGTGAGTATTTATTCGCTTTCTAATTATGTCCCTC
GATCTACTTACCTATTCAACTTCCGTTTCCCTCCCTTTCTCCCGCCGCGC
CTACCTTTCCCTCCACCTTTTTTACCTCATAGGTGCCCGTCACGATTGGC
AACATCATCGGCGGCTCGTTATTGATGGCAGGAACGCAGCACCTTGCTTT
CGGGGGCAAGAACATGGTGAGCCCACCCTCCTCTTCCTCGGATAAGAAGC
GGGAGTGAATCGGTGACCCTGATGGGGGGCAAACAGAAGAAGAAAACTGC
CAAGACGATAACAGCAGCACCAGTAGCAGCAGTAGCAGCGAGCAGGGAAT
ATCGGTTTGGGGCTCCAGGGAGGAAGGGAGTGGAGGTGAAGAAAATGGTT
GGGGCTTGGGGAGGGACACGCTGAAGCACGAAGGGGTAGTAGAGCCCCCG
CCCTTGTCACAGTTGCATTCTCCTTCGACCTCCTCATCTCTTCCTGATTT
TCAAGGAACAGCGCAATTTTAGCAACGAACGAAGGAGACGGAGCGGAATG
ACAACGATGAGAGGGACCAGCAGGGGGGGCAGGGAGTGAATGAGGGAAGG
AAGCAGATAACAAAATATAGAGGGCGCCGAGTTTTATTAAAAATGTATTA
ATAGCCCCTAGATAGTGAGTGAGTAGCGGTAATCTATATGCCTGTGGTGC
TTGACGAGTGTGTGTGTACGTGTGCGTAACTCTGTGTGTCTCTGACCGAG
AATTAGAAAATGAGAAAATTGCGCGAGCGTCTGGGTGTTTTTAGTGTGCG
TGTGTGTGTTGTGCCTGTCGATGACTCGCTTTCTGTCTCAGTGTGTTGTG
ATGACCTTATCGTTAACTTAAGTGTATGTGTGTGTTGTGCCTGTCGATGA
CTCGCTATCTGTGTCTGAGTATTGTGATGATCATCTGGTGGTTCACTTTA
GTGTTTGTGTGAATGTTATGCCTGTCGATG

Coding sequence (CDS) from alignment at scaffold_2:465346..467375+

>mRNA_802 ID=mRNA_802|Name=jgi.p|Nanoce1779_2|574191|organism=Nannochloropsis oceanica|type=CDS|length=2988bp|location=Sequence derived from alignment at scaffold_2:465346..467375+ (Nannochloropsis oceanica)
ATGAAGTTCACGACCTGCCTCGCGCTCGCCATGTGCATGGCATCAGCCTC
CACCTCGGCTTCCTTCTTTCCCAGCACAAACACAAAAAAGCAAACAATGA
GCGTACCCCCCCCGGCTCGCCGTCTCCTGACCAAGGTCCGCGGTGGGAGC
GACTCGTCCATTGTCGTCCAGCCCCTCATGAAAGCCCCCGCTGAAGCCTA
CAAGACCGTCCTAACCCTTGGTATCAAGAAAGCCAACCAACCGGCCAGTA
AGATATTGTTGCTCGGCCTCGTCGCGGGAATGCAGGTCGGAATCGGCGCT
GCCATGGCCGTGGCGACTCTGGGTGGGGTGCCTCTGCTCCAAGAGCAAAA
CCCAGCGCTCGCCAAAGTCCTGTTTGGTATTGTCGGCCTCCCGTGCTCCC
TCCTCCTGGTTGTAGCCACAGGCTCGGAGCTGTTTACCGGGAATACCGCG
ATGGTCGGCACAGCATTTTTCGAAGGTAAAGTCTCGCGACAGCAGCTGGC
CAAATCGTGGGGATGCTCTTACCTGGGTAACCTGTTGGGGGCGTCTTTCC
TCGCCATCCTATGCAATTATGCCGGAGTCTTTTCGCAAGCTGCGGGCACC
TTTACGGCGGTGGCAGATGCAAAGGCTTCCCTGCCGTTTGGTGTGGCGGT
TGCGAGGGGCATTGTGTGTAACTGGCTGGTCTGCAGCGCCGTGTGGTGCT
CCACTGCCGCGGCTGATTTGGTGTCTAAGGCGGTGGCGATTCTGATGATC
ATCACGATTTTTGCGGCGCTCGGTTTTGAGCATTCGATTGCCAATATGTT
TGTGGGACCATTTGGGGCGTTACAGAAGAGCTCGCGCACGAGCTTTCTCA
AGTTCTTCTTCAAGAACCTGGTGCCCGTCACGATTGGCAACATCATCGGC
GGCTCGTTATTGATGGCAGGAACGCAGCACCTTGCTTTCGGGGGCAAGAA
CATGGTGAGCCCACCCTCCTCTTCCTCGGATAAGAAGCGGGAGTGAATGA
AGTTCACGACCTGCCTCGCGCTCGCCATGTGCATGGCATCAGCCTCCACC
TCGGCTTCCTTCTTTCCCAGCACAAACACAAAAAAGCAAACAATGAGCGT
ACCCCCCCCGGCTCGCCGTCTCCTGACCAAGGTCCGCGGTGGGAGCGACT
CGTCCATTGTCGTCCAGCCCCTCATGAAAGCCCCCGCTGAAGCCTACAAG
ACCGTCCTAACCCTTGGTATCAAGAAAGCCAACCAACCGGCCAGTAAGAT
ATTGTTGCTCGGCCTCGTCGCGGGAATGCAGGTCGGAATCGGCGCTGCCA
TGGCCGTGGCGACTCTGGGTGGGGTGCCTCTGCTCCAAGAGCAAAACCCA
GCGCTCGCCAAAGTCCTGTTTGGTATTGTCGGCCTCCCGTGCTCCCTCCT
CCTGGTTGTAGCCACAGGCTCGGAGCTGTTTACCGGGAATACCGCGATGG
TCGGCACAGCATTTTTCGAAGGTAAAGTCTCGCGACAGCAGCTGGCCAAA
TCGTGGGGATGCTCTTACCTGGGTAACCTGTTGGGGGCGTCTTTCCTCGC
CATCCTATGCAATTATGCCGGAGTCTTTTCGCAAGCTGCGGGCACCTTTA
CGGCGGTGGCAGATGCAAAGGCTTCCCTGCCGTTTGGTGTGGCGGTTGCG
AGGGGCATTGTGTGTAACTGGCTGGTCTGCAGCGCCGTGTGGTGCTCCAC
TGCCGCGGCTGATTTGGTGTCTAAGGCGGTGGCGATTCTGATGATCATCA
CGATTTTTGCGGCGCTCGGTTTTGAGCATTCGATTGCCAATATGTTTGTG
GGACCATTTGGGGCGTTACAGAAGAGCTCGCGCACGAGCTTTCTCAAGTT
CTTCTTCAAGAACCTGGTGCCCGTCACGATTGGCAACATCATCGGCGGCT
CGTTATTGATGGCAGGAACGCAGCACCTTGCTTTCGGGGGCAAGAACATG
GTGAGCCCACCCTCCTCTTCCTCGGATAAGAAGCGGGAGTGAATGAAGTT
CACGACCTGCCTCGCGCTCGCCATGTGCATGGCATCAGCCTCCACCTCGG
CTTCCTTCTTTCCCAGCACAAACACAAAAAAGCAAACAATGAGCGTACCC
CCCCCGGCTCGCCGTCTCCTGACCAAGGTCCGCGGTGGGAGCGACTCGTC
CATTGTCGTCCAGCCCCTCATGAAAGCCCCCGCTGAAGCCTACAAGACCG
TCCTAACCCTTGGTATCAAGAAAGCCAACCAACCGGCCAGTAAGATATTG
TTGCTCGGCCTCGTCGCGGGAATGCAGGTCGGAATCGGCGCTGCCATGGC
CGTGGCGACTCTGGGTGGGGTGCCTCTGCTCCAAGAGCAAAACCCAGCGC
TCGCCAAAGTCCTGTTTGGTATTGTCGGCCTCCCGTGCTCCCTCCTCCTG
GTTGTAGCCACAGGCTCGGAGCTGTTTACCGGGAATACCGCGATGGTCGG
CACAGCATTTTTCGAAGGTAAAGTCTCGCGACAGCAGCTGGCCAAATCGT
GGGGATGCTCTTACCTGGGTAACCTGTTGGGGGCGTCTTTCCTCGCCATC
CTATGCAATTATGCCGGAGTCTTTTCGCAAGCTGCGGGCACCTTTACGGC
GGTGGCAGATGCAAAGGCTTCCCTGCCGTTTGGTGTGGCGGTTGCGAGGG
GCATTGTGTGTAACTGGCTGGTCTGCAGCGCCGTGTGGTGCTCCACTGCC
GCGGCTGATTTGGTGTCTAAGGCGGTGGCGATTCTGATGATCATCACGAT
TTTTGCGGCGCTCGGTTTTGAGCATTCGATTGCCAATATGTTTGTGGGAC
CATTTGGGGCGTTACAGAAGAGCTCGCGCACGAGCTTTCTCAAGTTCTTC
TTCAAGAACCTGGTGCCCGTCACGATTGGCAACATCATCGGCGGCTCGTT
ATTGATGGCAGGAACGCAGCACCTTGCTTTCGGGGGCAAGAACATGGTGA
GCCCACCCTCCTCTTCCTCGGATAAGAAGCGGGAGTGA

Synonyms

Publications