jgi.p|Nanoce1779_2|574993, mRNA_1003 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|574993
Unique Name	mRNA_1003
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1355
Alignment location	scaffold_2:989683..991100 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	575079
Track	FilteredModels2
ProteinId	574993

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:989683..991100 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574993	gene_1003	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574993	mRNA_1003-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1003	CDS_1003	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:989683..991100+
coding sequence from alignment at scaffold_2:989683..991100+

mRNA sequence

>mRNA_1003 ID=mRNA_1003|Name=jgi.p|Nanoce1779_2|574993|organism=Nannochloropsis oceanica|type=mRNA|length=1355bp
GATGCCACTGGACTGCGGAGCATCATGAAACGAAGCACTTCGATTCTCCT
TCTCCCACGCTCAGTACCCATACATTTCCACACACCAGGCATCAAGAAGA
AGTAGTATGTTTGACTGGACGCAAGGGACGCAATCACGGGCCTGGCTGTT
CAAGAGCGCGGAGGAACTAGCCGAGCTTCGGGCCAAGGCACATCAACTGG
CCAAGGAAGGCATTCGGGAGGGCAGAGGCGTGCCTATGCCTCGCAGTTTC
GCCTCGCGGCTGAGCACCGAAAGCAGCAGCAGTAGCAGCAGCAGCAGTAG
CGGCAGCAGTGGCCGCCTTCCCCCTCACCCCACCACGACGGCAGGTGTCA
AGCGCCCTCGCCCGAACGAAGAGGATAATAAATTTAAAGCTGATGACAAA
GGAGTGCCGACCGCAGAGCTGGAAGCATTGACTCCCGGAGACGAGGAAGC
CTTACTGCAGTATTTTGGGTACATGATTCAAGACTCATGCGGGCACCGTT
CCGAGAGCATCAAGCGGGGATTGAGCGTCCAAGCGACTGCCTTGACTTTT
TTCTATCGCTTCTTCCTCAGTAATTCCATGCTGGATTTTGACCCAAAGGT
GGTGCTGATGGCGTGCATGTTCTTGGCGGGCAAGGTGGAATATGATTATA
TACGACTGAGTGAGCTCAAGGACGTGTTTGGGGAGAAATACGGACGGCAC
ATAATTGAGTTCGAAGGCAGTTTATTACAAGGCCTGGGGTTTTGCCTGAA
GACCTATCACCCATACAATCCCTTTTTTGGATTGGTCAATGGTTTGGAGA
ATGTCAACCACGTCAAAAAGCTCGGGCTGACGGCCGCGGACTTGAGTCGT
ATATATGCTGCGGGCCAAGAAACGATCGATCTCCTCTTGCCAACCGACTT
GCCGTTGCTGCATACACCCGCACGTATTGCCTTGGCGGTATTGTTGGTGT
GTGCGGTGGATCTGGGAATGGTTGAGCCGGTTGAAAGTTACTTATCTTAT
TGCTTTGAAGAGGAGGATGAGTACGCGAGTATTATGAACGAGGTCGCGCT
TATTCGTCCTGCTGTAGAGAAGGCTCGACATGACGTGCCCAAAACTTTGG
AGGAACGGAAGCAGAGTCGGATGGAGACGTGGAAGGAGGCGATGGCAGGC
TTGAAAAAAGCGGCACGGTGGGGGACGAAGGGGGAAGGGAAGAAGCGGAA
AAAAAGTAAAGGCAGTGCAGGAGGAGGAGACAATGGGTCGGTTGCCAGTA
TGGGGGGTAGTGGACCAGAAGAGGTTGCGGAAGATGGTTGAAAAAGTACT
GAAATAACGAAACAGCTTTTGAATGTACGGGGCTATTTCTTTTAATGTCA
AACGT

protein sequence of jgi.p|Nanoce1779_2|574993

>mRNA_1003-protein ID=mRNA_1003-protein|Name=jgi.p|Nanoce1779_2|574993|organism=Nannochloropsis oceanica|type=polypeptide|length=395bp
MFDWTQGTQSRAWLFKSAEELAELRAKAHQLAKEGIREGRGVPMPRSFAS
RLSTESSSSSSSSSSGSSGRLPPHPTTTAGVKRPRPNEEDNKFKADDKGV
PTAELEALTPGDEEALLQYFGYMIQDSCGHRSESIKRGLSVQATALTFFY
RFFLSNSMLDFDPKVVLMACMFLAGKVEYDYIRLSELKDVFGEKYGRHII
EFEGSLLQGLGFCLKTYHPYNPFFGLVNGLENVNHVKKLGLTAADLSRIY
AAGQETIDLLLPTDLPLLHTPARIALAVLLVCAVDLGMVEPVESYLSYCF
EEEDEYASIMNEVALIRPAVEKARHDVPKTLEERKQSRMETWKEAMAGLK
KAARWGTKGEGKKRKKSKGSAGGGDNGSVASMGGSGPEEVAEDG*

mRNA from alignment at scaffold_2:989683..991100+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1003 ID=mRNA_1003|Name=jgi.p|Nanoce1779_2|574993|organism=Nannochloropsis oceanica|type=mRNA|length=1418bp|location=Sequence derived from alignment at scaffold_2:989683..991100+ (Nannochloropsis oceanica)
GATGCCACTGGACTGCGGAGCATCATGAAACGAAGCACTTCGATTCTCCT
TCTCCCACGCTCAGTACCCATACATTTCCACACACCAGGCATCAAGAAGA
AGTAGTATGTTTGACTGGACGCAAGGGACGCAATCACGGGCCTGGCTGTT
CAAGAGCGCGGAGGAACTAGGTACGTGTTGCTCCCCATTTCCAATTCCCA
TCCTCCCTTCCTTACCCCGTTTGCTACATACAGCCGAGCTTCGGGCCAAG
GCACATCAACTGGCCAAGGAAGGCATTCGGGAGGGCAGAGGCGTGCCTAT
GCCTCGCAGTTTCGCCTCGCGGCTGAGCACCGAAAGCAGCAGCAGTAGCA
GCAGCAGCAGTAGCGGCAGCAGTGGCCGCCTTCCCCCTCACCCCACCACG
ACGGCAGGTGTCAAGCGCCCTCGCCCGAACGAAGAGGATAATAAATTTAA
AGCTGATGACAAAGGAGTGCCGACCGCAGAGCTGGAAGCATTGACTCCCG
GAGACGAGGAAGCCTTACTGCAGTATTTTGGGTACATGATTCAAGACTCA
TGCGGGCACCGTTCCGAGAGCATCAAGCGGGGATTGAGCGTCCAAGCGAC
TGCCTTGACTTTTTTCTATCGCTTCTTCCTCAGTAATTCCATGCTGGATT
TTGACCCAAAGGTGGTGCTGATGGCGTGCATGTTCTTGGCGGGCAAGGTG
GAATATGATTATATACGACTGAGTGAGCTCAAGGACGTGTTTGGGGAGAA
ATACGGACGGCACATAATTGAGTTCGAAGGCAGTTTATTACAAGGCCTGG
GGTTTTGCCTGAAGACCTATCACCCATACAATCCCTTTTTTGGATTGGTC
AATGGTTTGGAGAATGTCAACCACGTCAAAAAGCTCGGGCTGACGGCCGC
GGACTTGAGTCGTATATATGCTGCGGGCCAAGAAACGATCGATCTCCTCT
TGCCAACCGACTTGCCGTTGCTGCATACACCCGCACGTATTGCCTTGGCG
GTATTGTTGGTGTGTGCGGTGGATCTGGGAATGGTTGAGCCGGTTGAAAG
TTACTTATCTTATTGCTTTGAAGAGGAGGATGAGTACGCGAGTATTATGA
ACGAGGTCGCGCTTATTCGTCCTGCTGTAGAGAAGGCTCGACATGACGTG
CCCAAAACTTTGGAGGAACGGAAGCAGAGTCGGATGGAGACGTGGAAGGA
GGCGATGGCAGGCTTGAAAAAAGCGGCACGGTGGGGGACGAAGGGGGAAG
GGAAGAAGCGGAAAAAAAGTAAAGGCAGTGCAGGAGGAGGAGACAATGGG
TCGGTTGCCAGTATGGGGGGTAGTGGACCAGAAGAGGTTGCGGAAGATGG
TTGAAAAAGTACTGAAATAACGAAACAGCTTTTGAATGTACGGGGCTATT
TCTTTTAATGTCAAACGT

Coding sequence (CDS) from alignment at scaffold_2:989683..991100+

>mRNA_1003 ID=mRNA_1003|Name=jgi.p|Nanoce1779_2|574993|organism=Nannochloropsis oceanica|type=CDS|length=2370bp|location=Sequence derived from alignment at scaffold_2:989683..991100+ (Nannochloropsis oceanica)
ATGTTTGACTGGACGCAAGGGACGCAATCACGGGCCTGGCTGTTCAAGAG
CGCGGAGGAACTAGCCGAGCTTCGGGCCAAGGCACATCAACTGGCCAAGG
AAGGCATTCGGGAGGGCAGAGGCGTGCCTATGCCTCGCAGTTTCGCCTCG
CGGCTGAGCACCGAAAGCAGCAGCAGTAGCAGCAGCAGCAGTAGCGGCAG
CAGTGGCCGCCTTCCCCCTCACCCCACCACGACGGCAGGTGTCAAGCGCC
CTCGCCCGAACGAAGAGGATAATAAATTTAAAGCTGATGACAAAGGAGTG
CCGACCGCAGAGCTGGAAGCATTGACTCCCGGAGACGAGGAAGCCTTACT
GCAGTATTTTGGGTACATGATTCAAGACTCATGCGGGCACCGTTCCGAGA
GCATCAAGCGGGGATTGAGCGTCCAAGCGACTGCCTTGACTTTTTTCTAT
CGCTTCTTCCTCAGTAATTCCATGCTGGATTTTGACCCAAAGGTGGTGCT
GATGGCGTGCATGTTCTTGGCGGGCAAGGTGGAATATGATTATATACGAC
TGAGTGAGCTCAAGGACGTGTTTGGGGAGAAATACGGACGGCACATAATT
GAGTTCGAAGGCAGTTTATTACAAGGCCTGGGGTTTTGCCTGAAGACCTA
TCACCCATACAATCCCTTTTTTGGATTGGTCAATGGTTTGGAGAATGTCA
ACCACGTCAAAAAGCTCGGGCTGACGGCCGCGGACTTGAGTCGTATATAT
GCTGCGGGCCAAGAAACGATCGATCTCCTCTTGCCAACCGACTTGCCGTT
GCTGCATACACCCGCACGTATTGCCTTGGCGGTATTGTTGGTGTGTGCGG
TGGATCTGGGAATGGTTGAGCCGGTTGAAAGTTACTTATCTTATTGCTTT
GAAGAGGAGGATGAGTACGCGAGTATTATGAACGAGGTCGCGCTTATTCG
TCCTGCTGTAGAGAAGGCTCGACATGACGTGCCCAAAACTTTGGAGGAAC
GGAAGCAGAGTCGGATGGAGACGTGGAAGGAGGCGATGGCAGGCTTGAAA
AAAGCGGCACGGTGGGGGACGAAGGGGGAAGGGAAGAAGCGGAAAAAAAG
TAAAGGCAGTGCAGGAGGAGGAGACAATGGGTCGGTTGCCAGTATGGGGG
GTAGTGGACCAGAAGAGGTTGCGGAAGATGGTTGAATGTTTGACTGGACG
CAAGGGACGCAATCACGGGCCTGGCTGTTCAAGAGCGCGGAGGAACTAGC
CGAGCTTCGGGCCAAGGCACATCAACTGGCCAAGGAAGGCATTCGGGAGG
GCAGAGGCGTGCCTATGCCTCGCAGTTTCGCCTCGCGGCTGAGCACCGAA
AGCAGCAGCAGTAGCAGCAGCAGCAGTAGCGGCAGCAGTGGCCGCCTTCC
CCCTCACCCCACCACGACGGCAGGTGTCAAGCGCCCTCGCCCGAACGAAG
AGGATAATAAATTTAAAGCTGATGACAAAGGAGTGCCGACCGCAGAGCTG
GAAGCATTGACTCCCGGAGACGAGGAAGCCTTACTGCAGTATTTTGGGTA
CATGATTCAAGACTCATGCGGGCACCGTTCCGAGAGCATCAAGCGGGGAT
TGAGCGTCCAAGCGACTGCCTTGACTTTTTTCTATCGCTTCTTCCTCAGT
AATTCCATGCTGGATTTTGACCCAAAGGTGGTGCTGATGGCGTGCATGTT
CTTGGCGGGCAAGGTGGAATATGATTATATACGACTGAGTGAGCTCAAGG
ACGTGTTTGGGGAGAAATACGGACGGCACATAATTGAGTTCGAAGGCAGT
TTATTACAAGGCCTGGGGTTTTGCCTGAAGACCTATCACCCATACAATCC
CTTTTTTGGATTGGTCAATGGTTTGGAGAATGTCAACCACGTCAAAAAGC
TCGGGCTGACGGCCGCGGACTTGAGTCGTATATATGCTGCGGGCCAAGAA
ACGATCGATCTCCTCTTGCCAACCGACTTGCCGTTGCTGCATACACCCGC
ACGTATTGCCTTGGCGGTATTGTTGGTGTGTGCGGTGGATCTGGGAATGG
TTGAGCCGGTTGAAAGTTACTTATCTTATTGCTTTGAAGAGGAGGATGAG
TACGCGAGTATTATGAACGAGGTCGCGCTTATTCGTCCTGCTGTAGAGAA
GGCTCGACATGACGTGCCCAAAACTTTGGAGGAACGGAAGCAGAGTCGGA
TGGAGACGTGGAAGGAGGCGATGGCAGGCTTGAAAAAAGCGGCACGGTGG
GGGACGAAGGGGGAAGGGAAGAAGCGGAAAAAAAGTAAAGGCAGTGCAGG
AGGAGGAGACAATGGGTCGGTTGCCAGTATGGGGGGTAGTGGACCAGAAG
AGGTTGCGGAAGATGGTTGA

Synonyms

Publications