jgi.p|Nanoce1779_2|636340, mRNA_1099 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|636340
Unique Name	mRNA_1099
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	828
Alignment location	scaffold_2:1223349..1224176 -

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Properties


Property Name	Value
TranscriptId	636426
Track	FilteredModels2
ProteinId	636340

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:1223349..1224176 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|636340	gene_1099	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1099	CDS_1099	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|636340	mRNA_1099-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:1223349..1224176-
coding sequence from alignment at scaffold_2:1223349..1224176-

mRNA sequence

>mRNA_1099 ID=mRNA_1099|Name=jgi.p|Nanoce1779_2|636340|organism=Nannochloropsis oceanica|type=mRNA|length=828bp
ATGGGTACCGCGTTTGGCTCCCCTGCGTCCTCCTCCCTCTCCTCATCCGC
TTTTTCGTCTTCCAACATTTCCTCCACTTCCTCCTCCCCGCCGTCCTCTA
CCGCACGGCGAGCTGTCAGCCTTCCTCGCCACAACCCGTCCTGGGCCTTT
CAAACAGCCGTCTCGGAAACTTTACAACGCCGAGGCTACATCGAAGCCCT
TTGGGACGCCCTCGTCGATGGCGACAAAGCTACTCATCGCCCTCCCATTC
CTTGTGAAGTCCTGCCTCTTATTTTGCACTACGCCGCGTCGTTCAAAGAA
GTGGCCTTGAGCAAAGAAGAGCATATCCAACTGTCCAATGGCGACTATCT
CTATTTGACGCACCCCATCCCTTTCGAGCTGCACGGGTATGAGGTGGTGG
GAGCTCAGATTTTAGTGACGTCCCACGATCAGGGTTGGAGCAGTGAATTT
CCTCATTTGAAGGGGACGTATATAGGGAGCTATACATGGGGGGAGGCGGT
GGTGGTGGAGAGTGGGGCGCCAACGGGTGTCACGGAGGGGGGATCACAGC
GGGTGGTGTTGGCGCAAGAGGTTTATCGGAATTTACATGCTGTCAAGACG
TGGCAGACGCACGAGAAGAGCTTCGTGGTTTCAGAATGTGTTGGGGACGG
GGTTGGCGTTGGGTGTGGGGGATGCATGGAGGAGAGGCGGCAGTCGGATG
GGGGTCATATAGTGGCTGCTTTGAGGCCAGGGCGGGCCTTGACCTTGAAG
TTACATGCTATGTATGCTGGGTGGGTCAACCATACCCGGTGGGCGCAGAT
CACGGTGCAGTACTTGAAGGTGGCTTGA

protein sequence of jgi.p|Nanoce1779_2|636340

>mRNA_1099-protein ID=mRNA_1099-protein|Name=jgi.p|Nanoce1779_2|636340|organism=Nannochloropsis oceanica|type=polypeptide|length=276bp
MGTAFGSPASSSLSSSAFSSSNISSTSSSPPSSTARRAVSLPRHNPSWAF
QTAVSETLQRRGYIEALWDALVDGDKATHRPPIPCEVLPLILHYAASFKE
VALSKEEHIQLSNGDYLYLTHPIPFELHGYEVVGAQILVTSHDQGWSSEF
PHLKGTYIGSYTWGEAVVVESGAPTGVTEGGSQRVVLAQEVYRNLHAVKT
WQTHEKSFVVSECVGDGVGVGCGGCMEERRQSDGGHIVAALRPGRALTLK
LHAMYAGWVNHTRWAQITVQYLKVA*

mRNA from alignment at scaffold_2:1223349..1224176-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1099 ID=mRNA_1099|Name=jgi.p|Nanoce1779_2|636340|organism=Nannochloropsis oceanica|type=mRNA|length=828bp|location=Sequence derived from alignment at scaffold_2:1223349..1224176- (Nannochloropsis oceanica)
ATGGGTACCGCGTTTGGCTCCCCTGCGTCCTCCTCCCTCTCCTCATCCGC
TTTTTCGTCTTCCAACATTTCCTCCACTTCCTCCTCCCCGCCGTCCTCTA
CCGCACGGCGAGCTGTCAGCCTTCCTCGCCACAACCCGTCCTGGGCCTTT
CAAACAGCCGTCTCGGAAACTTTACAACGCCGAGGCTACATCGAAGCCCT
TTGGGACGCCCTCGTCGATGGCGACAAAGCTACTCATCGCCCTCCCATTC
CTTGTGAAGTCCTGCCTCTTATTTTGCACTACGCCGCGTCGTTCAAAGAA
GTGGCCTTGAGCAAAGAAGAGCATATCCAACTGTCCAATGGCGACTATCT
CTATTTGACGCACCCCATCCCTTTCGAGCTGCACGGGTATGAGGTGGTGG
GAGCTCAGATTTTAGTGACGTCCCACGATCAGGGTTGGAGCAGTGAATTT
CCTCATTTGAAGGGGACGTATATAGGGAGCTATACATGGGGGGAGGCGGT
GGTGGTGGAGAGTGGGGCGCCAACGGGTGTCACGGAGGGGGGATCACAGC
GGGTGGTGTTGGCGCAAGAGGTTTATCGGAATTTACATGCTGTCAAGACG
TGGCAGACGCACGAGAAGAGCTTCGTGGTTTCAGAATGTGTTGGGGACGG
GGTTGGCGTTGGGTGTGGGGGATGCATGGAGGAGAGGCGGCAGTCGGATG
GGGGTCATATAGTGGCTGCTTTGAGGCCAGGGCGGGCCTTGACCTTGAAG
TTACATGCTATGTATGCTGGGTGGGTCAACCATACCCGGTGGGCGCAGAT
CACGGTGCAGTACTTGAAGGTGGCTTGA

Coding sequence (CDS) from alignment at scaffold_2:1223349..1224176-

>mRNA_1099 ID=mRNA_1099|Name=jgi.p|Nanoce1779_2|636340|organism=Nannochloropsis oceanica|type=CDS|length=828bp|location=Sequence derived from alignment at scaffold_2:1223349..1224176- (Nannochloropsis oceanica)
ATGGGTACCGCGTTTGGCTCCCCTGCGTCCTCCTCCCTCTCCTCATCCGC
TTTTTCGTCTTCCAACATTTCCTCCACTTCCTCCTCCCCGCCGTCCTCTA
CCGCACGGCGAGCTGTCAGCCTTCCTCGCCACAACCCGTCCTGGGCCTTT
CAAACAGCCGTCTCGGAAACTTTACAACGCCGAGGCTACATCGAAGCCCT
TTGGGACGCCCTCGTCGATGGCGACAAAGCTACTCATCGCCCTCCCATTC
CTTGTGAAGTCCTGCCTCTTATTTTGCACTACGCCGCGTCGTTCAAAGAA
GTGGCCTTGAGCAAAGAAGAGCATATCCAACTGTCCAATGGCGACTATCT
CTATTTGACGCACCCCATCCCTTTCGAGCTGCACGGGTATGAGGTGGTGG
GAGCTCAGATTTTAGTGACGTCCCACGATCAGGGTTGGAGCAGTGAATTT
CCTCATTTGAAGGGGACGTATATAGGGAGCTATACATGGGGGGAGGCGGT
GGTGGTGGAGAGTGGGGCGCCAACGGGTGTCACGGAGGGGGGATCACAGC
GGGTGGTGTTGGCGCAAGAGGTTTATCGGAATTTACATGCTGTCAAGACG
TGGCAGACGCACGAGAAGAGCTTCGTGGTTTCAGAATGTGTTGGGGACGG
GGTTGGCGTTGGGTGTGGGGGATGCATGGAGGAGAGGCGGCAGTCGGATG
GGGGTCATATAGTGGCTGCTTTGAGGCCAGGGCGGGCCTTGACCTTGAAG
TTACATGCTATGTATGCTGGGTGGGTCAACCATACCCGGTGGGCGCAGAT
CACGGTGCAGTACTTGAAGGTGGCTTGA

Synonyms

Publications