jgi.p|Nanoce1779_2|667814, mRNA_820 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|667814
Unique NamemRNA_820
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length559
Alignment locationscaffold_2:508028..508880 -

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Properties
Property NameValue
TranscriptId667900
TrackFilteredModels2
ProteinId667814
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:508028..508880 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|667814gene_820Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|667814mRNA_820-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_820CDS_820Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_820 ID=mRNA_820|Name=jgi.p|Nanoce1779_2|667814|organism=Nannochloropsis oceanica|type=mRNA|length=559bp
ATGCCACGCGCCCCAACTGCAAGCACAACGCCCAGCAGTATCGATGGGTT
GGAGACATTCCGCCAAGCTTTTGAGGGGCGGAAGATCTGGAAGTTGGTCA
CTTTCAGGACAAGCGGCGCGAGAAGCGGCACCAGCAGCGGCAGCGGCAAC
AGCTGCAGCAGCGGCAACAGCAGCAGCAGCGGCCGTACCACTATTACCAC
CAAAAAGAAAAATTGACGACAAAGAGAGGTGGGGAGGGGGAAGCGATGAA
CGCCGGGTTGAGTCGAGGAATGGAGGAGACGAACGTGGTGGACGTAAGAT
GAGAAGAAAGCATCACTATAGTAATGTAGTATCACCATTTGGAACACAGT
AGTGGCAACAGCTGCAGCCGCAGCAGACAGTAGCAGCCGCAGCAGCAGCA
GACCATCAGCATCAGCTGCACTATCGCCAGCAAGAGCAGTAATAGCAGCA
GCAGCAGCTTCAGCAGCGCAACAAGATTTGGCGATTGCCAAGGAACAAAC
GTACCAAAACCAAATCAAGACGAGGTGGGATACCCAAAACAACACAAGAT
GTTATGAGG
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protein sequence of jgi.p|Nanoce1779_2|667814

>mRNA_820-protein ID=mRNA_820-protein|Name=jgi.p|Nanoce1779_2|667814|organism=Nannochloropsis oceanica|type=polypeptide|length=103bp
MGWRHSAKLLRGGRSGSWSLSGQAAREAAPAAAAATAAAAATAAAAAVPL
LPPKRKIDDKERWGGGSDERRVESRNGGDERGGRKMRRKHHYSNVVSPFG
TQ*
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mRNA from alignment at scaffold_2:508028..508880-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_820 ID=mRNA_820|Name=jgi.p|Nanoce1779_2|667814|organism=Nannochloropsis oceanica|type=mRNA|length=853bp|location=Sequence derived from alignment at scaffold_2:508028..508880- (Nannochloropsis oceanica)
ATGCCACGCGCCCCAACTGCAAGCACAACGCCCAGCAGTATCGATGGGTT
GGAGACATTCCGCCAAGCTTTTGAGGGGCGGAAGATCTGGAAGTTGGTCA
CTTTCAGGACAAGGTAAGAATGGCGCGGAAGTGAAGGAAGGGGCGGAGGG
GAAAAGGGAGGATGATGCGGCTCATGGTGCTTGATTATATGCGTTTTGTG
CTTCTTGCCCTCGTACATGTGAGTTTAATGCGTGCTATTGCACCGCTTGC
TTGGAGAATGAAGAAGTGTTGGAGGAATTGATAACCAACGTTTTCCTTCT
TCTACAGATTAGGAAAAACCAGTTACTTTTTACTTTCACGTCGAGTAACT
TCATGGCGCAGATGCCATTTTCTCCGCAATCAGAAACACCGTCAACGGTA
CATGTAGCGGCGCGAGAAGCGGCACCAGCAGCGGCAGCGGCAACAGCTGC
AGCAGCGGCAACAGCAGCAGCAGCGGCCGTACCACTATTACCACCAAAAA
GAAAAATTGACGACAAAGAGAGGTGGGGAGGGGGAAGCGATGAACGCCGG
GTTGAGTCGAGGAATGGAGGAGACGAACGTGGTGGACGTAAGATGAGAAG
AAAGCATCACTATAGTAATGTAGTATCACCATTTGGAACACAGTAGTGGC
AACAGCTGCAGCCGCAGCAGACAGTAGCAGCCGCAGCAGCAGCAGACCAT
CAGCATCAGCTGCACTATCGCCAGCAAGAGCAGTAATAGCAGCAGCAGCA
GCTTCAGCAGCGCAACAAGATTTGGCGATTGCCAAGGAACAAACGTACCA
AAACCAAATCAAGACGAGGTGGGATACCCAAAACAACACAAGATGTTATG
AGG
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Coding sequence (CDS) from alignment at scaffold_2:508028..508880-

>mRNA_820 ID=mRNA_820|Name=jgi.p|Nanoce1779_2|667814|organism=Nannochloropsis oceanica|type=CDS|length=618bp|location=Sequence derived from alignment at scaffold_2:508028..508880- (Nannochloropsis oceanica)
CGGCGCGAGAAGCGGCACCAGCAGCGGCAGCGGCAACAGCTGCAGCAGCG
GCAACAGCAGCAGCAGCGGCCGTACCACTATTACCACCAAAAAGAAAAAT
TGACGACAAAGAGAGGTGGGGAGGGGGAAGCGATGAACGCCGGGTTGAGT
CGAGGAATGGAGGAGACGAACGTGGTGGACGTAAGATGAGAAGAAAGCAT
CACTATAGTAATGTAGTATCACCATTTGGAACACAGTAGATGGGTTGGAG
ACATTCCGCCAAGCTTTTGAGGGGCGGAAGATCTGGAAGTTGGTCACTTT
CAGGACAAGCGGCGCGAGAAGCGGCACCAGCAGCGGCAGCGGCAACAGCT
GCAGCAGCGGCAACAGCAGCAGCAGCGGCCGTACCACTATTACCACCAAA
AAGAAAAATTGACGACAAAGAGAGGTGGGGAGGGGGAAGCGATGAACGCC
GGGTTGAGTCGAGGAATGGAGGAGACGAACGTGGTGGACGTAAGATGAGA
AGAAAGCATCACTATAGTAATGTAGTATCACCATTTGGAACACAGTAGAT
GGGTTGGAGACATTCCGCCAAGCTTTTGAGGGGCGGAAGATCTGGAAGTT
GGTCACTTTCAGGACAAG
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Synonyms
Publications