jgi.p|Nanoce1779_2|187270, mRNA_8235 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|187270
Unique NamemRNA_8235
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1570
Alignment locationscaffold_23:144412..146319 +

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Properties
Property NameValue
TranscriptId187356
TrackFilteredModels2
ProteinId187270
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_23supercontigscaffold_23:144412..146319 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|187270gene_8235Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|187270mRNA_8235-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8235CDS_8235Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8235 ID=mRNA_8235|Name=jgi.p|Nanoce1779_2|187270|organism=Nannochloropsis oceanica|type=mRNA|length=1570bp
ACAAGGCCGTGTCTGCTTCTGTGCCAGCCGTCATCACCTCATTATTACCT
CTGCACGATGCAAACGATATATGAACTTGAAAGGATTTTGAGAAATTTTG
ACTTAAACTTAGATGTCATTTTGGGCTCTTCGAGACACTGGCCACGCATT
TGTCTGTCACACTGCTAGCTCTGCTCGTGTGCTTGGTGTCGTGAATGTAT
CAATACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTA
CTACTACTACTACTACTACTACTACTGCTACTACTACTTCTACTGCTGCT
ATTACCACCACCTTCCTCCAAACGAGAAGAAGACGGCACCATCCTCCCCT
TCTTTCTCTGCACCCCCTCCCTCCCTCCCTCCCTCCCTCTCCTCAACCAT
AAGACCATCGCCCTCGCCAACAACCAAACGCTCTCCACCACTCCCTCCCA
CATCCTCCCTACCCCTCCTCCCCTCCCGCACTCCCCATTTTGGACATCCC
AGGCATACAGCCATGCATCCTCTTCTTTCCCGTTAATCATATAATATCTG
GGTAGCCGCCCTTTATTTTGAAAATTCAAACTCGAGTAAAATTTGATGGC
GGGGCGGTTGGAAGGGAGGACATGAAGGTAGACTAGCCCCAGAACGACGG
GGGAGGAGGAGGAGGGCGGAAGGGCGGGGGGGAGGGAGGGGAAGGGATTC
GAAGGGAGGACATGGGGGGAGATCGGGCCAAGGGTGACGGGGGGGAAGGG
GGAGGGAGGGAGGGAGGGAAGGCGAGAGGAAGAGGTGGAGGAGGGGATGC
TGATTGACGTAGTGATGCAGCTGGAGGAGGAAGAGAAGGAGGATGGGGAG
GAGGAAGGGACGGCGGTGGAGGTGGCTTGTCCCCCAGTACCACAGCTGCT
GGTCGCCGGAGGGAGGGGAGAATGGCAGGACGTGGAGGAGGATGTGATGG
AGGAGTGGCCGAGGGCTTGGAGGAGGAGGGAAGAAAGCAGGGAGGTAGGT
GCTGCAGTTGATGGTATTGGTGTCTTCACAAAAGTGGAGGAGAAGAGCGG
AGAGGAAGGAGCGGAAGAGAAAGAGGAGGAAGGGGAGGAAGAAGAAGCGG
TTGAAGAGGGAGCTAAACCGCTTCTGATCCCCTTGTCCTGCCCTCCTCCT
ATATGCCCTCCCTCCTCCTCCTCCTCCTCCTCCTTCTCCTCCTCCTCCTT
CGTTGCCACCAGCTGTCTAGTAGTCTTCATCACCACTTCCTTCTCTCCTC
CTCTTCGCCCTCCCTGCTCCTGCTCCTCCTCCTCTCCCTCCATCGCGACC
AGTGTTATCAATGGCTGCAATGTCCCTACCATATACTGATGCACTGCACA
TTCATAAAAAGAATGTGAATACTTGACGGGGAAAAGTTCTTCGTGCAGGG
TTTTGATGGCGTGCAGGTCGTTGGGACAGAGCGGGCGAAAGGGCGAGGAG
TGGTGTCAATGGTTGTAGTGGTGCTGCTGGCGTGAGCGAGAGGCATGAAT
GGATAGTTAGATTGCACTGCGGAAAAAAGGCTCTAGTGCATGCTACGCAT
GTGCTACAGGGCGATGCTGC
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protein sequence of jgi.p|Nanoce1779_2|187270

>mRNA_8235-protein ID=mRNA_8235-protein|Name=jgi.p|Nanoce1779_2|187270|organism=Nannochloropsis oceanica|type=polypeptide|length=181bp
MLIDVVMQLEEEEKEDGEEEGTAVEVACPPVPQLLVAGGRGEWQDVEEDV
MEEWPRAWRRREESREVGAAVDGIGVFTKVEEKSGEEGAEEKEEEGEEEE
AVEEGAKPLLIPLSCPPPICPPSSSSSSSFSSSSFVATSCLVVFITTSFS
PPLRPPCSCSSSSPSIATSVINGCNVPTIY*
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mRNA from alignment at scaffold_23:144412..146319+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8235 ID=mRNA_8235|Name=jgi.p|Nanoce1779_2|187270|organism=Nannochloropsis oceanica|type=mRNA|length=1908bp|location=Sequence derived from alignment at scaffold_23:144412..146319+ (Nannochloropsis oceanica)
ACAAGGCCGTGTCTGCTTCTGTGCCAGCCGTCATCACCTCATTATTACCT
CTGCACGATGCAAACGATATATGAACTTGAAAGGATTTTGAGAAATTTTG
ACTTAAACTTAGATGTCATTTTGGGCTCTTCGAGACACTGGCCACGCATT
TGTCTGTCACACTGCTAGCTCTGCTCGTGTGCTTGGTGTCGTGAATGTAT
CAATACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTA
CTACTACTACTACTACTACTACTACTGCTACTACTACTTCTACTGCTGCT
ATTACCACCACCTTCCTCCAAACGAGAAGAAGACGGCACCATCCTCCCCT
TCTTTCTCTGCACCCCCTCCCTCCCTCCCTCCCTCCCTCTCCTCAACCAT
AAGACCATCGCCCTCGCCAACAACCAAACGCTCTCCACCACTCCCTCCCA
CATCCTCCCTACCCCTCCTCCCCTCCCGCACTCCCCATTTTGGACATCCC
AGGCATACAGCCATGCATCCTCTTCTTTCCCGTTAATCATATAATATCTG
GGTAGCCGCCCTTTATTTTGAAAATTCAAACTCGAGTAAAATTTGATGGC
GGGGCGGTTGGAAGGGAGGACATGAAGGTAGACTAGCCCCAGAACGACGG
GGGAGGAGGAGGAGGGCGGAAGGGCGGGGGGGAGGGAGGGGAAGGGATTC
GAAGGGAGGACATGGGGGGAGATCGGGCCAAGGGTGACGGGGGGGAAGGG
GGAGGGAGGGAGGGAGGGAAGGCGAGAGGAAGAGGTGGAGGAGGGGATGC
TGATTGACGTAGTGATGCAGCTGGAGGAGGAAGAGAAGGAGGATGGGGAG
GAGGAAGGGACGGCGGTGGAGGTGGCTTGTCCCCCAGTACCACAGCTGCT
GGTCGCCGGAGGGAGGGGAGAATGGCAGGACGTGGAGGAGGATGTGATGG
AGGAGTGGCCGAGGGCTTGGAGGAGGAGGGAGCGACCGAGGCCCCTTCGA
CGGGCATCGGGACGTGTGCCCAGCGTGAGGATGTACATGGCGTGTGTAGC
AGGAGCGGGAGGGATAGGGGGAGGCGTAGAGAGGAAAGAAGGGAGGAGCG
GGTAAGGAGAGAGGGGGAGGAGAAGGGAGGAGTCCTCGGCGGAGAGCTCG
GCAAGGGGGATGAGCTGAGCGAGGATGAAACCGACGAGGCGCCCGTTTCG
TTTTTGATTTACGGTCTGGAAAGGGGCCGGAAGGGAGGAGGAGGGGGAGG
AGGACAAGGAGAGAGAAAGCAGGGAGGTAGGTGCTGCAGTTGATGGTATT
GGTGTCTTCACAAAAGTGGAGGAGAAGAGCGGAGAGGAAGGAGCGGAAGA
GAAAGAGGAGGAAGGGGAGGAAGAAGAAGCGGTTGAAGAGGGAGCTAAAC
CGCTTCTGATCCCCTTGTCCTGCCCTCCTCCTATATGCCCTCCCTCCTCC
TCCTCCTCCTCCTCCTTCTCCTCCTCCTCCTTCGTTGCCACCAGCTGTCT
AGTAGTCTTCATCACCACTTCCTTCTCTCCTCCTCTTCGCCCTCCCTGCT
CCTGCTCCTCCTCCTCTCCCTCCATCGCGACCAGTGTTATCAATGGCTGC
AATGTCCCTACCATATACTGATGCACTGCACATTCATAAAAAGAATGTGA
ATACTTGACGGGGAAAAGTTCTTCGTGCAGGGTTTTGATGGCGTGCAGGT
CGTTGGGACAGAGCGGGCGAAAGGTGAGGGAGGGGGGGGGGGGAGTAAGA
GGACGTAGAGGAAGAGTGGGAGGAGGAAGGGCGAGGAGTGGTGTCAATGG
TTGTAGTGGTGCTGCTGGCGTGAGCGAGAGGCATGAATGGATAGTTAGAT
TGCACTGCGGAAAAAAGGCTCTAGTGCATGCTACGCATGTGCTACAGGGC
GATGCTGC
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Coding sequence (CDS) from alignment at scaffold_23:144412..146319+

>mRNA_8235 ID=mRNA_8235|Name=jgi.p|Nanoce1779_2|187270|organism=Nannochloropsis oceanica|type=CDS|length=1086bp|location=Sequence derived from alignment at scaffold_23:144412..146319+ (Nannochloropsis oceanica)
ATGCTGATTGACGTAGTGATGCAGCTGGAGGAGGAAGAGAAGGAGGATGG
GGAGGAGGAAGGGACGGCGGTGGAGGTGGCTTGTCCCCCAGTACCACAGC
TGCTGGTCGCCGGAGGGAGGGGAGAATGGCAGGACGTGGAGGAGGATGTG
ATGGAGGAGTGGCCGAGGGCTTGGAGGAGGAGGGAAGAAAGCAGGGAGGT
AGGTGCTGCAGTTGATGGTATTGGTGTCTTCACAAAAGTGGAGGAGAAGA
GCGGAGAGGAAGGAGCGGAAGAGAAAGAGGAGGAAGGGGAGGAAGAAGAA
GCGGTTGAAGAGGGAGCTAAACCGCTTCTGATCCCCTTGTCCTGCCCTCC
TCCTATATGCCCTCCCTCCTCCTCCTCCTCCTCCTCCTTCTCCTCCTCCT
CCTTCGTTGCCACCAGCTGTCTAGTAGTCTTCATCACCACTTCCTTCTCT
CCTCCTCTTCGCCCTCCCTGCTCCTGCTCCTCCTCCTCTCCCTCCATCGC
GACCAGTGTTATCAATGGCTGCAATGTCCCTACCATATACTGAATGCTGA
TTGACGTAGTGATGCAGCTGGAGGAGGAAGAGAAGGAGGATGGGGAGGAG
GAAGGGACGGCGGTGGAGGTGGCTTGTCCCCCAGTACCACAGCTGCTGGT
CGCCGGAGGGAGGGGAGAATGGCAGGACGTGGAGGAGGATGTGATGGAGG
AGTGGCCGAGGGCTTGGAGGAGGAGGGAAGAAAGCAGGGAGGTAGGTGCT
GCAGTTGATGGTATTGGTGTCTTCACAAAAGTGGAGGAGAAGAGCGGAGA
GGAAGGAGCGGAAGAGAAAGAGGAGGAAGGGGAGGAAGAAGAAGCGGTTG
AAGAGGGAGCTAAACCGCTTCTGATCCCCTTGTCCTGCCCTCCTCCTATA
TGCCCTCCCTCCTCCTCCTCCTCCTCCTCCTTCTCCTCCTCCTCCTTCGT
TGCCACCAGCTGTCTAGTAGTCTTCATCACCACTTCCTTCTCTCCTCCTC
TTCGCCCTCCCTGCTCCTGCTCCTCCTCCTCTCCCTCCATCGCGACCAGT
GTTATCAATGGCTGCAATGTCCCTACCATATACTGA
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Synonyms
Publications