jgi.p|Nanoce1779_2|603059, mRNA_8548 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|603059
Unique Name	mRNA_8548
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2129
Alignment location	scaffold_26:171482..174607 -

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Properties


Property Name	Value
TranscriptId	603145
Track	FilteredModels2
ProteinId	603059

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_26	supercontig	scaffold_26:171482..174607 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|603059	gene_8548	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|603059	mRNA_8548-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8548	CDS_8548	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_26:171482..174607-
coding sequence from alignment at scaffold_26:171482..174607-

mRNA sequence

>mRNA_8548 ID=mRNA_8548|Name=jgi.p|Nanoce1779_2|603059|organism=Nannochloropsis oceanica|type=mRNA|length=2129bp
AAAAATAATCCCCCAAAGTTCTACCCACAGGGTTGGCTCCTGTCCCACAA
GTGCTTGGCAGGCAGCCACAGCAAGCACGCACTTGATACGGAGAGGACGC
TGATATCTTTTGTGGTAGTGTACGAATCCGCGCTGCTTGGGGACGTTGGC
CTGTGTACTCTGTCTACGCGCGTGTCTCTCTCCTACCCGAGGCGTAAATT
GCGGCACCACGCCACGCACGGCACGACCCAGCACCAGTACAGTTCCAGAG
GATGCGCATTATCTCCCGAGAAAGGTTTGGCGGGGCTGCCTTCGACACGG
ACCCTGCCACAATGGCGAAGCGCCTGCATAAACACGGCGAGGCTGCCGCG
CAGGGGCACTGCCCACCGTCACAACACGCGGCAGCGCCTTGTGGTGTAGG
GGTGTTGGAGGGGTCTTGGGGTAACACTGAATATCAGGACCGGCAATGGG
ACCTGGAAAATAATATCAGCTCCGCCGCTCGGTGTGATTGTGGCCAGCAT
ACCTTTTGTATGTTGCCTCACCAGCAAGATGGAAGCATGGACACAGCGCC
CAACACACCTGACTTCAATAGCAGCACTAGTATGACCAGTCATAGCCAAC
ATTCTAGAGAAAAGCGTGGGCGGGTGGCGTCGGGCGAGACGCTTACAAAT
AGCAGCCGGCGGCATTTGGTCCTCTTGCCCGAAACCGGCTTGTCCTCCTC
CTCCTTGGCATCAGTAGCAGCAGCAGAAGGCGGAGACCCGGCAGACATTG
AAAATCTGAGCGCAAGCATGGTTCAGGCCATGACACGAAAGGGTGGTAGC
ACCGATGGGGCAGTCAGTGGCAGCAACAGCAACAACATTGCATCGTCAGG
CGTGCCTTCAATACCAGCATCATTTAGCAGAGCATCATTTGGCCTTTCCT
CATCCTTGGAGCAACCCCAAGACCACCACCTCCCAGGTTCCAATCACCCC
CATCCTCATCCCCAGCAGCAGCCATACCTGCCACAACAACAAAGACGGCG
TGGCTCCGTCTCAGGCGCTGATGGTAGCAGCAGAAGTATCGACCGAGGCA
GTTCCTTGGTTGACGGTGGAGCAGAAGAGTCGGAGGCTTTGTCGCTAGAT
AGAATACTTGTGGAAAGAAATGGAGACATGGTGGTGGTGGAAAGCTCTGT
GGTATGCGATGCCTGCCCATCATGTGATGATGTCTGTACGTTGCAGGACT
GCCGCGGGTGTCAGGAGAAGCGGGAGCGGCTGTTAGCGAGGGGGTTGATG
GTTGTTGTAGAGGCGTGGGGGAGGACGACGAGGAAGGAATCGATGCAGAA
ACAGCAACAGTCGTCGCCGGAAGGTGGCGTGTGCATGCCCATCATTGCCA
AGCCCCGTAGCACCACCACCAATGACAACAGCAGCCACAATGATACGTCC
TCCTCTCAACACGTCTACTACTCTCTTTGTGAAATCCGTCGGCATCGCAC
GCTTGCCTCCTGCTGGCTCGTGGCCAAAGGACAAGTGTATGATGTGACCC
CCTACCTCTCGTCTCACCCCGCAGGCGCAATAGCAATAGCAAGGAAAGCG
GGCGGCCAAGACTGTTCGGAAGACTTCGAATTCCACTCGGGCAAAGCCCA
AAAGATGTGGAAAAAGCTGAGGATTGGTTCTGTCAAAGCTTGTGCGGCGG
AAGGACGGTGTGGTGGTAGGGGTAGAGGAAGCGGAGGAGGGAGGGAGGAT
GGGTCGTTAGTTGGATCATCGTGCAGTATCATGTGAGGAGAGATCCTTGT
AGCGTACGATGGCAGGAAGGGAGACAGAGGAGGAGTGTTTTTTTTTTTTG
CCACATGTTTGGGCTAGCGGGAATAATGCGATGCTTATGTGCGACATAGA
CAGAAGTGAAGAATTTTAAAAATAGGATAAAGCCGACTCAACCAGAGAAA
TGGATGAAATAGACGGGCAAGTGAGGACGTGGCTCGAGGTTTGCGATATC
TCAATAGCAGCAGCAGCAGCAGCAGCAGCACAGAGCTAGAACAGCGACCA
ACGCAGCGCTTAGATATGAACAAAGAGACTTGAGGGGTGGAAAAAGGAAC
CAAAATGTGTGGCAAACGAAATAGACAGCTGCAAGTAAATCTCAAGCGAA
ACCAAAGAAAGAAGAGTTCCGATCATGAA

protein sequence of jgi.p|Nanoce1779_2|603059

>mRNA_8548-protein ID=mRNA_8548-protein|Name=jgi.p|Nanoce1779_2|603059|organism=Nannochloropsis oceanica|type=polypeptide|length=495bp
MRIISRERFGGAAFDTDPATMAKRLHKHGEAAAQGHCPPSQHAAAPCGVG
VLEGSWGNTEYQDRQWDLENNISSAARCDCGQHTFCMLPHQQDGSMDTAP
NTPDFNSSTSMTSHSQHSREKRGRVASGETLTNSSRRHLVLLPETGLSSS
SLASVAAAEGGDPADIENLSASMVQAMTRKGGSTDGAVSGSNSNNIASSG
VPSIPASFSRASFGLSSSLEQPQDHHLPGSNHPHPHPQQQPYLPQQQRRR
GSVSGADGSSRSIDRGSSLVDGGAEESEALSLDRILVERNGDMVVVESSV
VCDACPSCDDVCTLQDCRGCQEKRERLLARGLMVVVEAWGRTTRKESMQK
QQQSSPEGGVCMPIIAKPRSTTTNDNSSHNDTSSSQHVYYSLCEIRRHRT
LASCWLVAKGQVYDVTPYLSSHPAGAIAIARKAGGQDCSEDFEFHSGKAQ
KMWKKLRIGSVKACAAEGRCGGRGRGSGGGREDGSLVGSSCSIM*

mRNA from alignment at scaffold_26:171482..174607-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8548 ID=mRNA_8548|Name=jgi.p|Nanoce1779_2|603059|organism=Nannochloropsis oceanica|type=mRNA|length=3126bp|location=Sequence derived from alignment at scaffold_26:171482..174607- (Nannochloropsis oceanica)
AAAAATAATCCCCCAAAGTTCTTTGTACAATTGAGTGCGACTGTGCGTGC
GAGGCAGAATTGTGTGACACGTCATGTGCCTCTGCTTCACCCAGCTCGGG
AGGATGAGTGGACAGGGAGGGATGTCTCATAGAGGCAGGCGCGTGCCTTA
AGAGGCTGCGTTCGACAAAGCTACGTCCGAGCGATAAAGCTACATTCGAG
TGCATTTCCCATTTTTTTTGCGTTTCCTTCACGCCATTTACCTCTTTTCT
CGACGTCGCCACTTTTCGTCCCCATTCCCCTTCATCCCTGAGAGGCTTCC
TGTCAGTCACTACTCTATTATCTTTTGCCTTGCCGTAGCTAAGTGCTGAA
TAGTAGGGGAGAAGGATGGTTGCACCACTTATCCCATGCGGATATGGCTG
CAGCTACTGGAAATAGCATTTGCTGCATGAAGACGTGCTATGTCCAGCCA
TGTTGGGGACGAGAATGAAGAAAGCAATGAGGAAGAGAAAGAATACCATG
GGCCGGGTTTGCTTCAGAGAAGGGGGAGAGCATCTAGCCACACATGAGCC
CAATCATCCAAAAAAACGAAAGAAACACATGATCCCTCCAAATCTGTTGC
ACATGTGTGTGTAAGTGTGCAGGTTAGACAGGTCAGTCACCATAAGCCTC
TTTTTTAGCTAACATTCACCCCCGCTCCCCCCAAAATAGGAAAGAGGATG
ATCGGCTCCGGTCGCGAACCGAGAGGAGAGAGGCACGCGCGTGCCTTCGG
AGGACGTGTGCCCTCTTCTTGCTGTCGTCTGAATATACCACATCTCAACG
CTTTCCTCCTTTTCCCTCTTGCTTGATTTCACTCACTCTGGACTAGCACA
ATAGTCGTGCTCTATGTACCGCCACTGGTCATGAGGCATTGCTCGTTAGC
CGTTGTCTCCACAGCTCTCTAGATGTAAAGAGGGACGCCGTGGCGCTAGG
CATCTGCTTCTCGCTCGCTCCTTCCACGTCCAGCACACGCCCCCTCTCAC
ATCTTCCTTCCTCCCACCTACCCACAGGGTTGGCTCCTGTCCCACAAGTG
CTTGGCAGGCAGCCACAGCAAGCACGCACTTGATACGGAGAGGACGCTGA
TATCTTTTGTGGTAGTGTACGAATCCGCGCTGCTTGGGGACGTTGGCCTG
TGTACTCTGTCTACGCGCGTGTCTCTCTCCTACCCGAGGCGTAAATTGCG
GCACCACGCCACGCACGGCACGACCCAGCACCAGTACAGTTCCAGAGGAT
GCGCATTATCTCCCGAGAAAGGTTTGGCGGGGCTGCCTTCGACACGGACC
CTGCCACAATGGCGAAGCGCCTGCATAAACACGGCGAGGCTGCCGCGCAG
GGGCACTGCCCACCGTCACAACACGCGGCAGCGCCTTGTGGTGTAGGGGT
GTTGGAGGGGTCTTGGGGTAACACTGAATATCAGGACCGGCAATGGGACC
TGGAAAATAATATCAGCTCCGCCGCTCGGTGTGATTGTGGCCAGCATACC
TTTTGTATGTTGCCTCACCAGCAAGATGGAAGCATGGACACAGCGCCCAA
CACACCTGACTTCAATAGCAGCACTAGTATGACCAGTCATAGCCAACATT
CTAGAGAAAAGCGTGGGCGGGTGGCGTCGGGCGAGACGCTTACAAATAGC
AGCCGGCGGCATTTGGTCCTCTTGCCCGAAACCGGCTTGTCCTCCTCCTC
CTTGGCATCAGTAGCAGCAGCAGAAGGCGGAGACCCGGCAGACATTGAAA
ATCTGAGCGCAAGCATGGTTCAGGCCATGACACGAAAGGGTGGTAGCACC
GATGGGGCAGTCAGTGGCAGCAACAGCAACAACATTGCATCGTCAGGCGT
GCCTTCAATACCAGCATCATTTAGCAGAGCATCATTTGGCCTTTCCTCAT
CCTTGGAGCAACCCCAAGACCACCACCTCCCAGGTTCCAATCACCCCCAT
CCTCATCCCCAGCAGCAGCCATACCTGCCACAACAACAAAGACGGCGTGG
CTCCGTCTCAGGCGCTGATGGTAGCAGCAGAAGTATCGACCGAGGCAGTT
CCTTGGTTGACGGTGGAGCAGAAGAGTCGGAGGCTTTGTCGCTAGATAGA
ATACTTGTGGAAAGAAATGGAGACATGGTGGTGGTGGAAAGCTCTGTGGT
ATGCGATGCCTGCCCATCATGTGATGATGTCTGTACGTTGCAGGACTGCC
GCGGGTGTCAGGAGAAGCGGGAGCGGCTGTTAGCGAGGGGGTTGATGGTT
GTTGTAGAGGCGTGGGGGAGGACGACGAGGAAGGAATCGATGCAGAAACA
GCAACAGTCGTCGCCGGAAGGTGGCGTGTGCATGCCCATCATTGCCAAGC
CCCGTAGCACCACCACCAATGACAACAGCAGCCACAATGATACGTCCTCC
TCTCAACACGTCTACTACTCTCTTTGTGAAATCCGTCGGCATCGCACGCT
TGCCTCCTGCTGGCTCGTGGCCAAAGGACAAGTGTATGATGTGACCCCCT
ACCTCTCGTCTCACCCCGCAGGCGCAATAGCAATAGCAAGGAAAGCGGGC
GGCCAAGACTGTTCGGAAGACTTCGAATTCCACTCGGGCAAAGCCCAAAA
GATGTGGAAAAAGCTGAGGATTGGTTCTGTCAAAGCTTGTGCGGCGGAAG
GACGGTGTGGTGGTAGGGGTAGAGGAAGCGGAGGAGGGAGGGAGGATGGG
TCGTTAGTTGGATCATCGTGCAGTATCATGTGAGGAGAGATCCTTGTAGC
GTACGATGGCAGGAAGGGAGACAGAGGAGGAGTGTTTTTTTTTTTTGCCA
CATGTTTGGGCTAGCGGGAATAATGCGATGCTTATGTGCGACATAGACAG
AAGTGAAGAATTTTAAAAATAGGATAAAGCCGACTCAACCAGAGAAATGG
ATGAAATAGACGGGCAAGTGAGGACGTGGCTCGAGGTTTGCGATATCTCA
ATAGCAGCAGCAGCAGCAGCAGCAGCACAGAGCTAGAACAGCGACCAACG
CAGCGCTTAGATATGAACAAAGAGACTTGAGGGGTGGAAAAAGGAACCAA
AATGTGTGGCAAACGAAATAGACAGCTGCAAGTAAATCTCAAGCGAAACC
AAAGAAAGAAGAGTTCCGATCATGAA

Coding sequence (CDS) from alignment at scaffold_26:171482..174607-

>mRNA_8548 ID=mRNA_8548|Name=jgi.p|Nanoce1779_2|603059|organism=Nannochloropsis oceanica|type=CDS|length=1485bp|location=Sequence derived from alignment at scaffold_26:171482..174607- (Nannochloropsis oceanica)
ATGCGCATTATCTCCCGAGAAAGGTTTGGCGGGGCTGCCTTCGACACGGA
CCCTGCCACAATGGCGAAGCGCCTGCATAAACACGGCGAGGCTGCCGCGC
AGGGGCACTGCCCACCGTCACAACACGCGGCAGCGCCTTGTGGTGTAGGG
GTGTTGGAGGGGTCTTGGGGTAACACTGAATATCAGGACCGGCAATGGGA
CCTGGAAAATAATATCAGCTCCGCCGCTCGGTGTGATTGTGGCCAGCATA
CCTTTTGTATGTTGCCTCACCAGCAAGATGGAAGCATGGACACAGCGCCC
AACACACCTGACTTCAATAGCAGCACTAGTATGACCAGTCATAGCCAACA
TTCTAGAGAAAAGCGTGGGCGGGTGGCGTCGGGCGAGACGCTTACAAATA
GCAGCCGGCGGCATTTGGTCCTCTTGCCCGAAACCGGCTTGTCCTCCTCC
TCCTTGGCATCAGTAGCAGCAGCAGAAGGCGGAGACCCGGCAGACATTGA
AAATCTGAGCGCAAGCATGGTTCAGGCCATGACACGAAAGGGTGGTAGCA
CCGATGGGGCAGTCAGTGGCAGCAACAGCAACAACATTGCATCGTCAGGC
GTGCCTTCAATACCAGCATCATTTAGCAGAGCATCATTTGGCCTTTCCTC
ATCCTTGGAGCAACCCCAAGACCACCACCTCCCAGGTTCCAATCACCCCC
ATCCTCATCCCCAGCAGCAGCCATACCTGCCACAACAACAAAGACGGCGT
GGCTCCGTCTCAGGCGCTGATGGTAGCAGCAGAAGTATCGACCGAGGCAG
TTCCTTGGTTGACGGTGGAGCAGAAGAGTCGGAGGCTTTGTCGCTAGATA
GAATACTTGTGGAAAGAAATGGAGACATGGTGGTGGTGGAAAGCTCTGTG
GTATGCGATGCCTGCCCATCATGTGATGATGTCTGTACGTTGCAGGACTG
CCGCGGGTGTCAGGAGAAGCGGGAGCGGCTGTTAGCGAGGGGGTTGATGG
TTGTTGTAGAGGCGTGGGGGAGGACGACGAGGAAGGAATCGATGCAGAAA
CAGCAACAGTCGTCGCCGGAAGGTGGCGTGTGCATGCCCATCATTGCCAA
GCCCCGTAGCACCACCACCAATGACAACAGCAGCCACAATGATACGTCCT
CCTCTCAACACGTCTACTACTCTCTTTGTGAAATCCGTCGGCATCGCACG
CTTGCCTCCTGCTGGCTCGTGGCCAAAGGACAAGTGTATGATGTGACCCC
CTACCTCTCGTCTCACCCCGCAGGCGCAATAGCAATAGCAAGGAAAGCGG
GCGGCCAAGACTGTTCGGAAGACTTCGAATTCCACTCGGGCAAAGCCCAA
AAGATGTGGAAAAAGCTGAGGATTGGTTCTGTCAAAGCTTGTGCGGCGGA
AGGACGGTGTGGTGGTAGGGGTAGAGGAAGCGGAGGAGGGAGGGAGGATG
GGTCGTTAGTTGGATCATCGTGCAGTATCATGTGA

Synonyms

Publications