jgi.p|Nanoce1779_2|532981, mRNA_8819 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|532981
Unique NamemRNA_8819
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length309
Alignment locationscaffold_28:250520..250828 +

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Properties
Property NameValue
TranscriptId533067
TrackFilteredModels2
ProteinId532981
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_28supercontigscaffold_28:250520..250828 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|532981gene_8819Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|532981mRNA_8819-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8819CDS_8819Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8819 ID=mRNA_8819|Name=jgi.p|Nanoce1779_2|532981|organism=Nannochloropsis oceanica|type=mRNA|length=309bp
ACATCTCGTGTAAGTGCCGCAGATAATCAGTGGTACAATGTAACGTATGT
CAACGGTCTTTTTATCAGTGGAGCTCGGAGCGGTTCCGGAAATCGTGTCA
TGACAAGTTTCGATGGTATTACTTGGGCTATCCGCGCAAATGCTGCGAAT
AGTAATTGGGAAGCCGTTGAGTTTGGTGCCGATTTATACGTCTTCGTGTC
ATATTGGGGATTCGGGGGGCGAATCACGACCTGCGTCACCCCTTCTTTCT
TCTTGCAGCCGGGGATAAGGGCGCCGGCCTTAAGCATGCATGCCTGCGGT
GGAAGCTAA
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protein sequence of jgi.p|Nanoce1779_2|532981

>mRNA_8819-protein ID=mRNA_8819-protein|Name=jgi.p|Nanoce1779_2|532981|organism=Nannochloropsis oceanica|type=polypeptide|length=103bp
TSRVSAADNQWYNVTYVNGLFISGARSGSGNRVMTSFDGITWAIRANAAN
SNWEAVEFGADLYVFVSYWGFGGRITTCVTPSFFLQPGIRAPALSMHACG
GS*
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mRNA from alignment at scaffold_28:250520..250828+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8819 ID=mRNA_8819|Name=jgi.p|Nanoce1779_2|532981|organism=Nannochloropsis oceanica|type=mRNA|length=309bp|location=Sequence derived from alignment at scaffold_28:250520..250828+ (Nannochloropsis oceanica)
ACATCTCGTGTAAGTGCCGCAGATAATCAGTGGTACAATGTAACGTATGT
CAACGGTCTTTTTATCAGTGGAGCTCGGAGCGGTTCCGGAAATCGTGTCA
TGACAAGTTTCGATGGTATTACTTGGGCTATCCGCGCAAATGCTGCGAAT
AGTAATTGGGAAGCCGTTGAGTTTGGTGCCGATTTATACGTCTTCGTGTC
ATATTGGGGATTCGGGGGGCGAATCACGACCTGCGTCACCCCTTCTTTCT
TCTTGCAGCCGGGGATAAGGGCGCCGGCCTTAAGCATGCATGCCTGCGGT
GGAAGCTAA
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Coding sequence (CDS) from alignment at scaffold_28:250520..250828+

>mRNA_8819 ID=mRNA_8819|Name=jgi.p|Nanoce1779_2|532981|organism=Nannochloropsis oceanica|type=CDS|length=309bp|location=Sequence derived from alignment at scaffold_28:250520..250828+ (Nannochloropsis oceanica)
ACATCTCGTGTAAGTGCCGCAGATAATCAGTGGTACAATGTAACGTATGT
CAACGGTCTTTTTATCAGTGGAGCTCGGAGCGGTTCCGGAAATCGTGTCA
TGACAAGTTTCGATGGTATTACTTGGGCTATCCGCGCAAATGCTGCGAAT
AGTAATTGGGAAGCCGTTGAGTTTGGTGCCGATTTATACGTCTTCGTGTC
ATATTGGGGATTCGGGGGGCGAATCACGACCTGCGTCACCCCTTCTTTCT
TCTTGCAGCCGGGGATAAGGGCGCCGGCCTTAAGCATGCATGCCTGCGGT
GGAAGCTAA
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Synonyms
Publications