jgi.p|Nanoce1779_2|603884, mRNA_8757 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|603884
Unique NamemRNA_8757
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length594
Alignment locationscaffold_28:53725..54318 +

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Properties
Property NameValue
TranscriptId603970
TrackFilteredModels2
ProteinId603884
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_28supercontigscaffold_28:53725..54318 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603884gene_8757Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603884mRNA_8757-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8757CDS_8757Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8757 ID=mRNA_8757|Name=jgi.p|Nanoce1779_2|603884|organism=Nannochloropsis oceanica|type=mRNA|length=594bp
GACGACATAATGAAATATTTCTCTCATTGGCATTGAATGGCCCTCAAAAT
TTCTAACCTTGTGGTTCTTTATTCTTTCCCGTCCCTCTTTGAATTTCTGT
CATCCTTCGCCGTTTTCACTGTGGTGTTGCGAAGTTCTTTCCCCAGATTT
ATCTCTACCCTCTTCCTTTACTTTGAATATGAGCGAGGAATCAATCTCTC
GATTGCCCTCTATCTCTCTCGTATTCGGTCGTACCGCAATGACATGGCAT
GGACGCAGCCCTACACACGCCTTCACATCTACACACACGCAAACACACAA
CCCGCAACTGCTCTTCCATTTCGACCCCGATTTATAGAAAAAAAAATAAA
AATTTAAGAAGTAGACGAAAGCACATTTAAATCAGCATTTTCTAGCTCAT
AGGGGAGTCGGTCGGTCTTCCCACTTACCACAGTCAATCACCATCATTAC
CGAATCATCTCCATCATCACCATCATCATATCACCATCACCATCATCTAT
TGAGGTGCGCGTGAACCCCTACCCCCCCCTTCTCTTCCTCTCTTCCACAT
TCATCTATACATCATAAACACCCACGCCACAATGCCAGCCAACC
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protein sequence of jgi.p|Nanoce1779_2|603884

>mRNA_8757-protein ID=mRNA_8757-protein|Name=jgi.p|Nanoce1779_2|603884|organism=Nannochloropsis oceanica|type=polypeptide|length=107bp
MALKISNLVVLYSFPSLFEFLSSFAVFTVVLRSSFPRFISTLFLYFEYER
GINLSIALYLSRIRSYRNDMAWTQPYTRLHIYTHANTQPATALPFRPRFI
EKKIKI*
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mRNA from alignment at scaffold_28:53725..54318+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8757 ID=mRNA_8757|Name=jgi.p|Nanoce1779_2|603884|organism=Nannochloropsis oceanica|type=mRNA|length=594bp|location=Sequence derived from alignment at scaffold_28:53725..54318+ (Nannochloropsis oceanica)
GACGACATAATGAAATATTTCTCTCATTGGCATTGAATGGCCCTCAAAAT
TTCTAACCTTGTGGTTCTTTATTCTTTCCCGTCCCTCTTTGAATTTCTGT
CATCCTTCGCCGTTTTCACTGTGGTGTTGCGAAGTTCTTTCCCCAGATTT
ATCTCTACCCTCTTCCTTTACTTTGAATATGAGCGAGGAATCAATCTCTC
GATTGCCCTCTATCTCTCTCGTATTCGGTCGTACCGCAATGACATGGCAT
GGACGCAGCCCTACACACGCCTTCACATCTACACACACGCAAACACACAA
CCCGCAACTGCTCTTCCATTTCGACCCCGATTTATAGAAAAAAAAATAAA
AATTTAAGAAGTAGACGAAAGCACATTTAAATCAGCATTTTCTAGCTCAT
AGGGGAGTCGGTCGGTCTTCCCACTTACCACAGTCAATCACCATCATTAC
CGAATCATCTCCATCATCACCATCATCATATCACCATCACCATCATCTAT
TGAGGTGCGCGTGAACCCCTACCCCCCCCTTCTCTTCCTCTCTTCCACAT
TCATCTATACATCATAAACACCCACGCCACAATGCCAGCCAACC
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Coding sequence (CDS) from alignment at scaffold_28:53725..54318+

>mRNA_8757 ID=mRNA_8757|Name=jgi.p|Nanoce1779_2|603884|organism=Nannochloropsis oceanica|type=CDS|length=321bp|location=Sequence derived from alignment at scaffold_28:53725..54318+ (Nannochloropsis oceanica)
ATGGCCCTCAAAATTTCTAACCTTGTGGTTCTTTATTCTTTCCCGTCCCT
CTTTGAATTTCTGTCATCCTTCGCCGTTTTCACTGTGGTGTTGCGAAGTT
CTTTCCCCAGATTTATCTCTACCCTCTTCCTTTACTTTGAATATGAGCGA
GGAATCAATCTCTCGATTGCCCTCTATCTCTCTCGTATTCGGTCGTACCG
CAATGACATGGCATGGACGCAGCCCTACACACGCCTTCACATCTACACAC
ACGCAAACACACAACCCGCAACTGCTCTTCCATTTCGACCCCGATTTATA
GAAAAAAAAATAAAAATTTAA
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Synonyms
Publications