jgi.p|Nanoce1779_2|563023, mRNA_7 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|563023
Unique NamemRNA_7
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length330
Alignment locationscaffold_3:15338..15667 -

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Properties
Property NameValue
TranscriptId563109
TrackFilteredModels2
ProteinId563023
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:15338..15667 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|563023gene_7Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7CDS_7Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|563023mRNA_7-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7 ID=mRNA_7|Name=jgi.p|Nanoce1779_2|563023|organism=Nannochloropsis oceanica|type=mRNA|length=330bp
ATGGCCCTCCCGCACCTGGACAGGGGGAAAGGGAGTGGGGAGGAGGAGGA
GGGAGGGAGAGAGGGAACGACGGGAAGGGGGGGGGGCATTCGCAGGGTGC
TCGGCGGATTATTTTCGCCGTGGTCCCTCTTGATGGCGGGAAGGAAGAAG
GGAAAGGGCGGGCGGGAGGAAGGGAGGGAGGGAGAGGGGGGCATGGAGGG
GGAGGGGGGGGAGGAAGAGGAGGAGATTCAGGAAGGGGAGGAGGAGAAGG
ATGACGAAAAGGAGCTGAAGAGCGTGAGTTCGACAGGGTGGATGGAAGCA
GTAGGCCTGGTGGCAGAGAAGCGGCAGTAG
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protein sequence of jgi.p|Nanoce1779_2|563023

>mRNA_7-protein ID=mRNA_7-protein|Name=jgi.p|Nanoce1779_2|563023|organism=Nannochloropsis oceanica|type=polypeptide|length=110bp
MALPHLDRGKGSGEEEEGGREGTTGRGGGIRRVLGGLFSPWSLLMAGRKK
GKGGREEGREGEGGMEGEGGEEEEEIQEGEEEKDDEKELKSVSSTGWMEA
VGLVAEKRQ*
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mRNA from alignment at scaffold_3:15338..15667-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7 ID=mRNA_7|Name=jgi.p|Nanoce1779_2|563023|organism=Nannochloropsis oceanica|type=mRNA|length=330bp|location=Sequence derived from alignment at scaffold_3:15338..15667- (Nannochloropsis oceanica)
ATGGCCCTCCCGCACCTGGACAGGGGGAAAGGGAGTGGGGAGGAGGAGGA
GGGAGGGAGAGAGGGAACGACGGGAAGGGGGGGGGGCATTCGCAGGGTGC
TCGGCGGATTATTTTCGCCGTGGTCCCTCTTGATGGCGGGAAGGAAGAAG
GGAAAGGGCGGGCGGGAGGAAGGGAGGGAGGGAGAGGGGGGCATGGAGGG
GGAGGGGGGGGAGGAAGAGGAGGAGATTCAGGAAGGGGAGGAGGAGAAGG
ATGACGAAAAGGAGCTGAAGAGCGTGAGTTCGACAGGGTGGATGGAAGCA
GTAGGCCTGGTGGCAGAGAAGCGGCAGTAG
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Coding sequence (CDS) from alignment at scaffold_3:15338..15667-

>mRNA_7 ID=mRNA_7|Name=jgi.p|Nanoce1779_2|563023|organism=Nannochloropsis oceanica|type=CDS|length=330bp|location=Sequence derived from alignment at scaffold_3:15338..15667- (Nannochloropsis oceanica)
ATGGCCCTCCCGCACCTGGACAGGGGGAAAGGGAGTGGGGAGGAGGAGGA
GGGAGGGAGAGAGGGAACGACGGGAAGGGGGGGGGGCATTCGCAGGGTGC
TCGGCGGATTATTTTCGCCGTGGTCCCTCTTGATGGCGGGAAGGAAGAAG
GGAAAGGGCGGGCGGGAGGAAGGGAGGGAGGGAGAGGGGGGCATGGAGGG
GGAGGGGGGGGAGGAAGAGGAGGAGATTCAGGAAGGGGAGGAGGAGAAGG
ATGACGAAAAGGAGCTGAAGAGCGTGAGTTCGACAGGGTGGATGGAAGCA
GTAGGCCTGGTGGCAGAGAAGCGGCAGTAG
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Synonyms
Publications