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Properties
| Property Name | Value |
|---|
| TranscriptId | 577006 |
| Track | FilteredModels2 |
| ProteinId | 576920 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_3 | supercontig | scaffold_3:786570..788409 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_317 ID=mRNA_317|Name=jgi.p|Nanoce1779_2|576920|organism=Nannochloropsis oceanica|type=mRNA|length=1126bp
AGCACATCACACACACACAAGCGACCAGTCACAATCAAGGCATGGAGCAC
ACGAAAGGCACGCGGGTCTTGGCGGCAGCAGCTACCTGTGCCACAGGAAT
TCTGCTCTACGTGACTTACAAGGGCTGGCTCGCGATATGTAAAAAGGAGG
AGGAAAAGGAAGAAGAGATTGGTAAAGTAATCTCGCTTTACGTCTACCCA
GTCAAGTCCTGCAAGGGCATCGAGGTTCAAGCATCTCTCGTGGAAGCCCG
AGGGTTGATGTTGGACCGGCTGTGGATGGTTACGACGTCGACAGGCACAT
TTCGAACTCAACGCCAGATCCCCAAGATGGCGTTGATCCAGCCCAATCTA
CCATCGTCCTTGTCTGCGCCCTTGGAACTGAATGCTCCCGACATGCCCAC
ATGCGTTGTCCCAGTGTGGACGACAGGAAAGCAAGTGCGTGTACGCGTGT
GGGATGATCACTGCCAGGGATATGACCAAGGCGATGAGGTGGCTCAATGG
CTCTCGACGTTCTTGGAGGAGGAGGACTTGCGGTTGGTGCGGATCGATGA
TAAAGAACGCCGCCAGGTCGAATTGGCTTTTGCGCCGCGCGGGAGCATCA
CAGGCTTTGCCGACGGCTTTCCCTTCTTGCTGGCCAACCAAAGCTCTCTG
GACGACTTGAACGATCGCCTGCCCACACCTATCCCTATGGCTCGCTTCCG
ACCTAATATCGTCGTGGGGGGCCCAGCTGCCTTCGACGAGGATAAGTGGG
ATAAAATTGCGATTGGCGACATCCGCCTTCGTGTAGTTAAGCCTTGCTCT
CGATGCAAGATCCCCAACACGGATCAGGAGACTGCCGAGGTTGCGAAGGA
ACCCGCAGAGACGCTTAAGAAGTTCAGGACGGGTGCCATTCTAGGCATTG
GATATGGGGGAAAAGACGAGTTTTACTTTGCTGAAAACCTAATTCATGAC
AGCAAAAAAAAAACGGGCGTTGTTTCCGTGGGCGATCCCTTGAGAGTCTT
CACTTGAGAAGATGAAAAAATAAGATAGTAAGAAAGGGGGATTGAAGTAT
GATTCGCAACTTGCTTATTGAGAAGTATTCGGGTTCAAGTCAGTGTAAAA
AGAAAAGTTGTGTGCCAAAGTGTTGA back to topprotein sequence of jgi.p|Nanoce1779_2|576920 >mRNA_317-protein ID=mRNA_317-protein|Name=jgi.p|Nanoce1779_2|576920|organism=Nannochloropsis oceanica|type=polypeptide|length=322bp
MEHTKGTRVLAAAATCATGILLYVTYKGWLAICKKEEEKEEEIGKVISLY
VYPVKSCKGIEVQASLVEARGLMLDRLWMVTTSTGTFRTQRQIPKMALIQ
PNLPSSLSAPLELNAPDMPTCVVPVWTTGKQVRVRVWDDHCQGYDQGDEV
AQWLSTFLEEEDLRLVRIDDKERRQVELAFAPRGSITGFADGFPFLLANQ
SSLDDLNDRLPTPIPMARFRPNIVVGGPAAFDEDKWDKIAIGDIRLRVVK
PCSRCKIPNTDQETAEVAKEPAETLKKFRTGAILGIGYGGKDEFYFAENL
IHDSKKKTGVVSVGDPLRVFT* back to topmRNA from alignment at scaffold_3:786570..788409+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_317 ID=mRNA_317|Name=jgi.p|Nanoce1779_2|576920|organism=Nannochloropsis oceanica|type=mRNA|length=1840bp|location=Sequence derived from alignment at scaffold_3:786570..788409+ (Nannochloropsis oceanica)
AGCACATCACACACACACAAGCGACCAGTCACAATCAAGGCATGGAGCAC
ACGAAAGGCACGCGGGTCTTGGCGGCAGCAGCTACCTGTGCCACAGGAAT
TCTGCTCTACGTGACTTACAAGGGCTGGCTCGCGATATGTAAAAAGGTAA
TTTAGAGGCCAATGTCTGTAGAGAGTGGTCGTGGGGAGGGGAGGTGGGAT
AATGAGCAACGGATGCCGCCACTCGGCGTATGAAAAGTAAGGTTGAAAAG
AGAGTAGATTATGAAACACCAATCAACAAAATTCACACCCTCCTACTCTC
ATCTGCACAGGAGGAGGAAAAGGAAGAAGAGATTGGTAAAGTAATCTCGC
TTTACGTCTACCCAGTCAAGTCCTGCAAGGGCATCGAGGTTCAAGCATCT
CTCGTGGAAGCCCGAGGGTTGATGTTGGACCGGCTGTGGATGGTTACGAC
GTCGACAGGCACATTTCGAACTCAACGCCAGATCCCCAAGATGGCGTTGA
TCCAGCCCAATCTACCATCGTCCTTGTCTGCGGTAAGTGGGAAGTAAGAC
ACGCAGGGAAGATGAGCTCGCGAATGAATTGGCTTCTCCCCAATTTATGA
CACGTATCCACATTCAACCTGCAAATACAGCCCTTGGAACTGAATGCTCC
CGACATGCCCACATGCGTTGTCCCAGTGTGGACGACAGGAAAGCAAGTGC
GTGTACGCGTGTGGGATGATCACTGCCAGGGATATGACCAAGGCGATGAG
GTGGCTCAATGGCTCTCGACGTTCTTGGAGGAGGTATATGTGCTACACAA
CGGGATGATGTGAATATTGTGGGAACATGAGATGCCCATTTTATTCTTTT
TATCTTTATCTTTCATCTATTATCCTCCCTACAGGAGGACTTGCGGTTGG
TGCGGATCGATGATAAAGAACGCCGCCAGGTCGAATTGGCTTTTGCGCCG
CGCGGGAGCATCACAGGTGAGTGAAGCGCATAGTGACGGAGGCAGATATA
TACTAAGCATATTTGCCTCTAAGTATCTATTTGCCTCCCATTACTAACAC
ATGTCCTCGGTTACGCCATTATTTTTACAGGCTTTGCCGACGGCTTTCCC
TTCTTGCTGGCCAACCAAAGCTCTCTGGACGACTTGAACGATCGCCTGCC
CACACCTATCCCTATGGCTCGCTTCCGACCTAAGTAAGTTCTCATCTGGC
TTCAGAGAAGCGGAAACGTGCGGTTCATTCATGTTTTGGATGCTATTTTT
TCTGCGTCTTGGTCATAAACAGTATCGTCGTGGGGGGCCCAGCTGCCTTC
GACGAGGATAAGTGGGATAAAATTGCGATTGGCGACATCCGCCTTCGTGT
AGTTAAGCCTTGCTCTCGATGCAAGATCCCCAACACGGATCAGGAGACTG
CCGAGGTTGCGAAGGAACCCGCAGAGACGCTTAAGAAGTTCAGGTGAGTG
CTGCTCGGGGAAGCAAATGTCAAAGAGTGATATACATGAGCTGCAAGAGG
TTTGCGCAACTTTGTATGCCGTGTCATTGGAGTCAGACAAACCAATTATT
ACCGGCAATCACACACACACACATCTGTAAATATATCATAGGACGGGTGC
CATTCTAGGCATTGGATATGGGGGAAAAGACGAGTTTTACTTTGCTGAAA
ACCTAATTCATGACAGCAAAAAAAAAACGGGCGTTGTTTCCGTGGGCGAT
CCCTTGAGAGTCTTCACTTGAGAAGATGAAAAAATAAGATAGTAAGAAAG
GGGGATTGAAGTATGATTCGCAACTTGCTTATTGAGAAGTATTCGGGTTC
AAGTCAGTGTAAAAAGAAAAGTTGTGTGCCAAAGTGTTGA back to topCoding sequence (CDS) from alignment at scaffold_3:786570..788409+ >mRNA_317 ID=mRNA_317|Name=jgi.p|Nanoce1779_2|576920|organism=Nannochloropsis oceanica|type=CDS|length=6762bp|location=Sequence derived from alignment at scaffold_3:786570..788409+ (Nannochloropsis oceanica)
ATGGAGCACACGAAAGGCACGCGGGTCTTGGCGGCAGCAGCTACCTGTGC
CACAGGAATTCTGCTCTACGTGACTTACAAGGGCTGGCTCGCGATATGTA
AAAAGGAGGAGGAAAAGGAAGAAGAGATTGGTAAAGTAATCTCGCTTTAC
GTCTACCCAGTCAAGTCCTGCAAGGGCATCGAGGTTCAAGCATCTCTCGT
GGAAGCCCGAGGGTTGATGTTGGACCGGCTGTGGATGGTTACGACGTCGA
CAGGCACATTTCGAACTCAACGCCAGATCCCCAAGATGGCGTTGATCCAG
CCCAATCTACCATCGTCCTTGTCTGCGCCCTTGGAACTGAATGCTCCCGA
CATGCCCACATGCGTTGTCCCAGTGTGGACGACAGGAAAGCAAGTGCGTG
TACGCGTGTGGGATGATCACTGCCAGGGATATGACCAAGGCGATGAGGTG
GCTCAATGGCTCTCGACGTTCTTGGAGGAGGAGGACTTGCGGTTGGTGCG
GATCGATGATAAAGAACGCCGCCAGGTCGAATTGGCTTTTGCGCCGCGCG
GGAGCATCACAGGCTTTGCCGACGGCTTTCCCTTCTTGCTGGCCAACCAA
AGCTCTCTGGACGACTTGAACGATCGCCTGCCCACACCTATCCCTATGGC
TCGCTTCCGACCTAATATCGTCGTGGGGGGCCCAGCTGCCTTCGACGAGG
ATAAGTGGGATAAAATTGCGATTGGCGACATCCGCCTTCGTGTAGTTAAG
CCTTGCTCTCGATGCAAGATCCCCAACACGGATCAGGAGACTGCCGAGGT
TGCGAAGGAACCCGCAGAGACGCTTAAGAAGTTCAGGACGGGTGCCATTC
TAGGCATTGGATATGGGGGAAAAGACGAGTTTTACTTTGCTGAAAACCTA
ATTCATGACAGCAAAAAAAAAACGGGCGTTGTTTCCGTGGGCGATCCCTT
GAGAGTCTTCACTTGAATGGAGCACACGAAAGGCACGCGGGTCTTGGCGG
CAGCAGCTACCTGTGCCACAGGAATTCTGCTCTACGTGACTTACAAGGGC
TGGCTCGCGATATGTAAAAAGGAGGAGGAAAAGGAAGAAGAGATTGGTAA
AGTAATCTCGCTTTACGTCTACCCAGTCAAGTCCTGCAAGGGCATCGAGG
TTCAAGCATCTCTCGTGGAAGCCCGAGGGTTGATGTTGGACCGGCTGTGG
ATGGTTACGACGTCGACAGGCACATTTCGAACTCAACGCCAGATCCCCAA
GATGGCGTTGATCCAGCCCAATCTACCATCGTCCTTGTCTGCGCCCTTGG
AACTGAATGCTCCCGACATGCCCACATGCGTTGTCCCAGTGTGGACGACA
GGAAAGCAAGTGCGTGTACGCGTGTGGGATGATCACTGCCAGGGATATGA
CCAAGGCGATGAGGTGGCTCAATGGCTCTCGACGTTCTTGGAGGAGGAGG
ACTTGCGGTTGGTGCGGATCGATGATAAAGAACGCCGCCAGGTCGAATTG
GCTTTTGCGCCGCGCGGGAGCATCACAGGCTTTGCCGACGGCTTTCCCTT
CTTGCTGGCCAACCAAAGCTCTCTGGACGACTTGAACGATCGCCTGCCCA
CACCTATCCCTATGGCTCGCTTCCGACCTAATATCGTCGTGGGGGGCCCA
GCTGCCTTCGACGAGGATAAGTGGGATAAAATTGCGATTGGCGACATCCG
CCTTCGTGTAGTTAAGCCTTGCTCTCGATGCAAGATCCCCAACACGGATC
AGGAGACTGCCGAGGTTGCGAAGGAACCCGCAGAGACGCTTAAGAAGTTC
AGGACGGGTGCCATTCTAGGCATTGGATATGGGGGAAAAGACGAGTTTTA
CTTTGCTGAAAACCTAATTCATGACAGCAAAAAAAAAACGGGCGTTGTTT
CCGTGGGCGATCCCTTGAGAGTCTTCACTTGAATGGAGCACACGAAAGGC
ACGCGGGTCTTGGCGGCAGCAGCTACCTGTGCCACAGGAATTCTGCTCTA
CGTGACTTACAAGGGCTGGCTCGCGATATGTAAAAAGGAGGAGGAAAAGG
AAGAAGAGATTGGTAAAGTAATCTCGCTTTACGTCTACCCAGTCAAGTCC
TGCAAGGGCATCGAGGTTCAAGCATCTCTCGTGGAAGCCCGAGGGTTGAT
GTTGGACCGGCTGTGGATGGTTACGACGTCGACAGGCACATTTCGAACTC
AACGCCAGATCCCCAAGATGGCGTTGATCCAGCCCAATCTACCATCGTCC
TTGTCTGCGCCCTTGGAACTGAATGCTCCCGACATGCCCACATGCGTTGT
CCCAGTGTGGACGACAGGAAAGCAAGTGCGTGTACGCGTGTGGGATGATC
ACTGCCAGGGATATGACCAAGGCGATGAGGTGGCTCAATGGCTCTCGACG
TTCTTGGAGGAGGAGGACTTGCGGTTGGTGCGGATCGATGATAAAGAACG
CCGCCAGGTCGAATTGGCTTTTGCGCCGCGCGGGAGCATCACAGGCTTTG
CCGACGGCTTTCCCTTCTTGCTGGCCAACCAAAGCTCTCTGGACGACTTG
AACGATCGCCTGCCCACACCTATCCCTATGGCTCGCTTCCGACCTAATAT
CGTCGTGGGGGGCCCAGCTGCCTTCGACGAGGATAAGTGGGATAAAATTG
CGATTGGCGACATCCGCCTTCGTGTAGTTAAGCCTTGCTCTCGATGCAAG
ATCCCCAACACGGATCAGGAGACTGCCGAGGTTGCGAAGGAACCCGCAGA
GACGCTTAAGAAGTTCAGGACGGGTGCCATTCTAGGCATTGGATATGGGG
GAAAAGACGAGTTTTACTTTGCTGAAAACCTAATTCATGACAGCAAAAAA
AAAACGGGCGTTGTTTCCGTGGGCGATCCCTTGAGAGTCTTCACTTGAAT
GGAGCACACGAAAGGCACGCGGGTCTTGGCGGCAGCAGCTACCTGTGCCA
CAGGAATTCTGCTCTACGTGACTTACAAGGGCTGGCTCGCGATATGTAAA
AAGGAGGAGGAAAAGGAAGAAGAGATTGGTAAAGTAATCTCGCTTTACGT
CTACCCAGTCAAGTCCTGCAAGGGCATCGAGGTTCAAGCATCTCTCGTGG
AAGCCCGAGGGTTGATGTTGGACCGGCTGTGGATGGTTACGACGTCGACA
GGCACATTTCGAACTCAACGCCAGATCCCCAAGATGGCGTTGATCCAGCC
CAATCTACCATCGTCCTTGTCTGCGCCCTTGGAACTGAATGCTCCCGACA
TGCCCACATGCGTTGTCCCAGTGTGGACGACAGGAAAGCAAGTGCGTGTA
CGCGTGTGGGATGATCACTGCCAGGGATATGACCAAGGCGATGAGGTGGC
TCAATGGCTCTCGACGTTCTTGGAGGAGGAGGACTTGCGGTTGGTGCGGA
TCGATGATAAAGAACGCCGCCAGGTCGAATTGGCTTTTGCGCCGCGCGGG
AGCATCACAGGCTTTGCCGACGGCTTTCCCTTCTTGCTGGCCAACCAAAG
CTCTCTGGACGACTTGAACGATCGCCTGCCCACACCTATCCCTATGGCTC
GCTTCCGACCTAATATCGTCGTGGGGGGCCCAGCTGCCTTCGACGAGGAT
AAGTGGGATAAAATTGCGATTGGCGACATCCGCCTTCGTGTAGTTAAGCC
TTGCTCTCGATGCAAGATCCCCAACACGGATCAGGAGACTGCCGAGGTTG
CGAAGGAACCCGCAGAGACGCTTAAGAAGTTCAGGACGGGTGCCATTCTA
GGCATTGGATATGGGGGAAAAGACGAGTTTTACTTTGCTGAAAACCTAAT
TCATGACAGCAAAAAAAAAACGGGCGTTGTTTCCGTGGGCGATCCCTTGA
GAGTCTTCACTTGAATGGAGCACACGAAAGGCACGCGGGTCTTGGCGGCA
GCAGCTACCTGTGCCACAGGAATTCTGCTCTACGTGACTTACAAGGGCTG
GCTCGCGATATGTAAAAAGGAGGAGGAAAAGGAAGAAGAGATTGGTAAAG
TAATCTCGCTTTACGTCTACCCAGTCAAGTCCTGCAAGGGCATCGAGGTT
CAAGCATCTCTCGTGGAAGCCCGAGGGTTGATGTTGGACCGGCTGTGGAT
GGTTACGACGTCGACAGGCACATTTCGAACTCAACGCCAGATCCCCAAGA
TGGCGTTGATCCAGCCCAATCTACCATCGTCCTTGTCTGCGCCCTTGGAA
CTGAATGCTCCCGACATGCCCACATGCGTTGTCCCAGTGTGGACGACAGG
AAAGCAAGTGCGTGTACGCGTGTGGGATGATCACTGCCAGGGATATGACC
AAGGCGATGAGGTGGCTCAATGGCTCTCGACGTTCTTGGAGGAGGAGGAC
TTGCGGTTGGTGCGGATCGATGATAAAGAACGCCGCCAGGTCGAATTGGC
TTTTGCGCCGCGCGGGAGCATCACAGGCTTTGCCGACGGCTTTCCCTTCT
TGCTGGCCAACCAAAGCTCTCTGGACGACTTGAACGATCGCCTGCCCACA
CCTATCCCTATGGCTCGCTTCCGACCTAATATCGTCGTGGGGGGCCCAGC
TGCCTTCGACGAGGATAAGTGGGATAAAATTGCGATTGGCGACATCCGCC
TTCGTGTAGTTAAGCCTTGCTCTCGATGCAAGATCCCCAACACGGATCAG
GAGACTGCCGAGGTTGCGAAGGAACCCGCAGAGACGCTTAAGAAGTTCAG
GACGGGTGCCATTCTAGGCATTGGATATGGGGGAAAAGACGAGTTTTACT
TTGCTGAAAACCTAATTCATGACAGCAAAAAAAAAACGGGCGTTGTTTCC
GTGGGCGATCCCTTGAGAGTCTTCACTTGAATGGAGCACACGAAAGGCAC
GCGGGTCTTGGCGGCAGCAGCTACCTGTGCCACAGGAATTCTGCTCTACG
TGACTTACAAGGGCTGGCTCGCGATATGTAAAAAGGAGGAGGAAAAGGAA
GAAGAGATTGGTAAAGTAATCTCGCTTTACGTCTACCCAGTCAAGTCCTG
CAAGGGCATCGAGGTTCAAGCATCTCTCGTGGAAGCCCGAGGGTTGATGT
TGGACCGGCTGTGGATGGTTACGACGTCGACAGGCACATTTCGAACTCAA
CGCCAGATCCCCAAGATGGCGTTGATCCAGCCCAATCTACCATCGTCCTT
GTCTGCGCCCTTGGAACTGAATGCTCCCGACATGCCCACATGCGTTGTCC
CAGTGTGGACGACAGGAAAGCAAGTGCGTGTACGCGTGTGGGATGATCAC
TGCCAGGGATATGACCAAGGCGATGAGGTGGCTCAATGGCTCTCGACGTT
CTTGGAGGAGGAGGACTTGCGGTTGGTGCGGATCGATGATAAAGAACGCC
GCCAGGTCGAATTGGCTTTTGCGCCGCGCGGGAGCATCACAGGCTTTGCC
GACGGCTTTCCCTTCTTGCTGGCCAACCAAAGCTCTCTGGACGACTTGAA
CGATCGCCTGCCCACACCTATCCCTATGGCTCGCTTCCGACCTAATATCG
TCGTGGGGGGCCCAGCTGCCTTCGACGAGGATAAGTGGGATAAAATTGCG
ATTGGCGACATCCGCCTTCGTGTAGTTAAGCCTTGCTCTCGATGCAAGAT
CCCCAACACGGATCAGGAGACTGCCGAGGTTGCGAAGGAACCCGCAGAGA
CGCTTAAGAAGTTCAGGACGGGTGCCATTCTAGGCATTGGATATGGGGGA
AAAGACGAGTTTTACTTTGCTGAAAACCTAATTCATGACAGCAAAAAAAA
AACGGGCGTTGTTTCCGTGGGCGATCCCTTGAGAGTCTTCACTTGAATGG
AGCACACGAAAGGCACGCGGGTCTTGGCGGCAGCAGCTACCTGTGCCACA
GGAATTCTGCTCTACGTGACTTACAAGGGCTGGCTCGCGATATGTAAAAA
GGAGGAGGAAAAGGAAGAAGAGATTGGTAAAGTAATCTCGCTTTACGTCT
ACCCAGTCAAGTCCTGCAAGGGCATCGAGGTTCAAGCATCTCTCGTGGAA
GCCCGAGGGTTGATGTTGGACCGGCTGTGGATGGTTACGACGTCGACAGG
CACATTTCGAACTCAACGCCAGATCCCCAAGATGGCGTTGATCCAGCCCA
ATCTACCATCGTCCTTGTCTGCGCCCTTGGAACTGAATGCTCCCGACATG
CCCACATGCGTTGTCCCAGTGTGGACGACAGGAAAGCAAGTGCGTGTACG
CGTGTGGGATGATCACTGCCAGGGATATGACCAAGGCGATGAGGTGGCTC
AATGGCTCTCGACGTTCTTGGAGGAGGAGGACTTGCGGTTGGTGCGGATC
GATGATAAAGAACGCCGCCAGGTCGAATTGGCTTTTGCGCCGCGCGGGAG
CATCACAGGCTTTGCCGACGGCTTTCCCTTCTTGCTGGCCAACCAAAGCT
CTCTGGACGACTTGAACGATCGCCTGCCCACACCTATCCCTATGGCTCGC
TTCCGACCTAATATCGTCGTGGGGGGCCCAGCTGCCTTCGACGAGGATAA
GTGGGATAAAATTGCGATTGGCGACATCCGCCTTCGTGTAGTTAAGCCTT
GCTCTCGATGCAAGATCCCCAACACGGATCAGGAGACTGCCGAGGTTGCG
AAGGAACCCGCAGAGACGCTTAAGAAGTTCAGGACGGGTGCCATTCTAGG
CATTGGATATGGGGGAAAAGACGAGTTTTACTTTGCTGAAAACCTAATTC
ATGACAGCAAAAAAAAAACGGGCGTTGTTTCCGTGGGCGATCCCTTGAGA
GTCTTCACTTGA back to top
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