jgi.p|Nanoce1779_2|605240, mRNA_9627 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|605240
Unique Name	mRNA_9627
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	866
Alignment location	scaffold_31:121087..122783 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	605326
Track	FilteredModels2
ProteinId	605240

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_31	supercontig	scaffold_31:121087..122783 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|605240	gene_9627	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|605240	mRNA_9627-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9627	CDS_9627	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_31:121087..122783+
coding sequence from alignment at scaffold_31:121087..122783+

mRNA sequence

>mRNA_9627 ID=mRNA_9627|Name=jgi.p|Nanoce1779_2|605240|organism=Nannochloropsis oceanica|type=mRNA|length=866bp
CAGGTAAACCATGGCGCCATCCACTAGAACAAGTCGCCTCGTCATTCTCT
TCCTCCTCCTTGCTATCTGCGCCCTTGTCTCCTCCTTTTACACGGCCCCT
GCTCGCGCCGCGGCCTCGGCCGCCTCCCTTCTGCCCTTCCACCGGCAGCA
CAAGAACAAGCAACAGCAGCACAAGTCCATCTTAGCCCGTCTGTCCACGA
CGCGGGGAGGGGTGGCAGGAAAGGTGAAGGAGGTGCAGACATTGGAGGAG
ACGGAGGCGGCGTTGAGCGAGGCGGGCAGCAAGCTGGTGGTGCTAGACTT
TACGGCGACATGGTGCGGCCCGTGCAAGCTCATCTCCCCCGTCTTTGACG
CTCTGTCTGAAGAGATCTCCACCAACGAAGCTGTCTTTCTAAAGGTGGAT
GTGGACGTCAACGAGGGCACGGCTAGGAAGTTCGAGGTCTTCCAAATGCC
GACTTTCGTGTTCGTCAAGGACGGGGAAGTGAAGGGCCGCTTGTTGGGCG
CCAACCCTGACAAGCTCCGCGAGGCGGTCTTCCGCTTTCTATGAGCAGAG
GGAGAGGAGGGGGGGGGAAGGGATAAGGAGCTCTGAAGAATGCGGAAAGA
AGATGGCTTAAGAAAAGGGACGAAGGAATGAAGGGGAGGTAGGGAGCCCT
GAAGATTGGAGAGAGTTGATAAGATGAGGAGGCACATGGTCAAGTGATTT
AGTCAGCGCATGCTGGCCCTGTCCTATCCAAGCAAAGTAAGTGGGGCTGC
AAACGTGATTGATGACGACGACGAGTAAAACAAGCGTAGTAAAACAATAA
AAGGCATGCCATTAGACGAAAGGATGTTGTTGTTTTTTATTTTTTTATTT
TTTAACCTTCGCTCCT

protein sequence of jgi.p|Nanoce1779_2|605240

>mRNA_9627-protein ID=mRNA_9627-protein|Name=jgi.p|Nanoce1779_2|605240|organism=Nannochloropsis oceanica|type=polypeptide|length=178bp
MAPSTRTSRLVILFLLLAICALVSSFYTAPARAAASAASLLPFHRQHKNK
QQQHKSILARLSTTRGGVAGKVKEVQTLEETEAALSEAGSKLVVLDFTAT
WCGPCKLISPVFDALSEEISTNEAVFLKVDVDVNEGTARKFEVFQMPTFV
FVKDGEVKGRLLGANPDKLREAVFRFL*

mRNA from alignment at scaffold_31:121087..122783+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9627 ID=mRNA_9627|Name=jgi.p|Nanoce1779_2|605240|organism=Nannochloropsis oceanica|type=mRNA|length=1697bp|location=Sequence derived from alignment at scaffold_31:121087..122783+ (Nannochloropsis oceanica)
CAGGTAAACCATGGCGCCATCCACTAGAACAAGTCGCCTCGTCATTCTCT
TCCTCCTCCTTGCTATCTGCGCCCTTGTCTCCTCCTTTTACACGGCCCCT
GCTCGCGCCGCGGCCTCGGCCGCCTCCCTTCTGCCCTTCCACCGGCAGCA
CAAGAACAAGCAACAGCAGCACAAGTCCATCTTAGCCCGTCTGTCCACGA
CGCGGGGAGGGGTGGCAGGAAAGGTAGGGTGGCCTTTAGATCGTCGATGG
AAGGAGAAGGCTGCTGAGAACAAAAGGCTGGGAGGTCCAGATTAGGCAAG
CAGGGAGTAACAGTTGGAGGGTTGGAAAAGCGGTTATCTTTCGTTGGAAA
AGGAGTGAACCGTCATTTTTGGTCTCCAACACATCGTCTCTTTCATTTAA
ACCCGTAAATTCCACACATAAAAATATTGAGGGGCGCTGCCGTCCTTACC
ATGCTCGCCGCATGCCCACCTATGCCCTCCCTCCCTGCTTCCTTTCTGTC
CCTGTTACTCAAATTTTTCGATAGGTGAAGGAGGTGCAGACATTGGAGGA
GACGGAGGCGGCGTTGAGCGAGGCGGGCAGCAAGCTGGTGGTGCTAGACT
TTACGGCGACATGGTAAAGGGAAGAAGGGAGCGAGGGAGGGAGGGAGGAT
AGATAAGGGGAAGGGTATAAATCGCTTGGATTCAAAGGCAGAAGATGTGA
ATGCACTCAACACTGGCATTCTTACTAAGTACCAGGGCAGTCAGCCCAAA
TCAGTAATCCTCGGGGCGTGTGACACCCATCATCTCGATATCTAAATGTT
TCCTTCCCTTCCCTCAATCCCTTCCCTCCCTCCTTACCCTCGCCAGGTGC
GGCCCGTGCAAGCTCATCTCCCCCGTCTTTGACGCTCTGTCTGAAGAGAT
CTCCACCAACGAAGCTGTCTTTCTAAAGGTGGATGTGGACGTCAACGAGG
TGATGAAGGGATGGGGAGGGAGGAATTGAGGGGAGAGATGGCAAGAAGAC
TAGTACGGAGGGAGGGTGGTATCCGCGTAGTTATTCACAAAATTCTGCTC
TCATTTTCCCCCCTACCCATATTTATCCTTCATGTCTCATTACTGTCCTT
TCTCCTCTTTTTCAAACTCGAACTAGGGCACGGCTAGGAAGTTCGAGGTC
TTCCAAATGCCGGTACGTCAGCCCCTCTTCCTCCCTCCCTCCCTCCCTCC
AACCCTCAAGAAAAATTCTATTTCGATCGCACACACACTGCTCTTCTCCT
CTCCTTCTTTTTATCTATGCTCACTACCCCAGACTTTCGTGTTCGTCAAG
GACGGGGAAGTGAAGGGCCGCTTGTTGGGCGCCAACCCTGACAAGCTCCG
CGAGGCGGTCTTCCGCTTTCTATGAGCAGAGGGAGAGGAGGGGGGGGGAA
GGGATAAGGAGCTCTGAAGAATGCGGAAAGAAGATGGCTTAAGAAAAGGG
ACGAAGGAATGAAGGGGAGGTAGGGAGCCCTGAAGATTGGAGAGAGTTGA
TAAGATGAGGAGGCACATGGTCAAGTGATTTAGTCAGCGCATGCTGGCCC
TGTCCTATCCAAGCAAAGTAAGTGGGGCTGCAAACGTGATTGATGACGAC
GACGAGTAAAACAAGCGTAGTAAAACAATAAAAGGCATGCCATTAGACGA
AAGGATGTTGTTGTTTTTTATTTTTTTATTTTTTAACCTTCGCTCCT

Coding sequence (CDS) from alignment at scaffold_31:121087..122783+

>mRNA_9627 ID=mRNA_9627|Name=jgi.p|Nanoce1779_2|605240|organism=Nannochloropsis oceanica|type=CDS|length=2670bp|location=Sequence derived from alignment at scaffold_31:121087..122783+ (Nannochloropsis oceanica)
ATGGCGCCATCCACTAGAACAAGTCGCCTCGTCATTCTCTTCCTCCTCCT
TGCTATCTGCGCCCTTGTCTCCTCCTTTTACACGGCCCCTGCTCGCGCCG
CGGCCTCGGCCGCCTCCCTTCTGCCCTTCCACCGGCAGCACAAGAACAAG
CAACAGCAGCACAAGTCCATCTTAGCCCGTCTGTCCACGACGCGGGGAGG
GGTGGCAGGAAAGGTGAAGGAGGTGCAGACATTGGAGGAGACGGAGGCGG
CGTTGAGCGAGGCGGGCAGCAAGCTGGTGGTGCTAGACTTTACGGCGACA
TGGTGCGGCCCGTGCAAGCTCATCTCCCCCGTCTTTGACGCTCTGTCTGA
AGAGATCTCCACCAACGAAGCTGTCTTTCTAAAGGTGGATGTGGACGTCA
ACGAGGGCACGGCTAGGAAGTTCGAGGTCTTCCAAATGCCGACTTTCGTG
TTCGTCAAGGACGGGGAAGTGAAGGGCCGCTTGTTGGGCGCCAACCCTGA
CAAGCTCCGCGAGGCGGTCTTCCGCTTTCTATGAATGGCGCCATCCACTA
GAACAAGTCGCCTCGTCATTCTCTTCCTCCTCCTTGCTATCTGCGCCCTT
GTCTCCTCCTTTTACACGGCCCCTGCTCGCGCCGCGGCCTCGGCCGCCTC
CCTTCTGCCCTTCCACCGGCAGCACAAGAACAAGCAACAGCAGCACAAGT
CCATCTTAGCCCGTCTGTCCACGACGCGGGGAGGGGTGGCAGGAAAGGTG
AAGGAGGTGCAGACATTGGAGGAGACGGAGGCGGCGTTGAGCGAGGCGGG
CAGCAAGCTGGTGGTGCTAGACTTTACGGCGACATGGTGCGGCCCGTGCA
AGCTCATCTCCCCCGTCTTTGACGCTCTGTCTGAAGAGATCTCCACCAAC
GAAGCTGTCTTTCTAAAGGTGGATGTGGACGTCAACGAGGGCACGGCTAG
GAAGTTCGAGGTCTTCCAAATGCCGACTTTCGTGTTCGTCAAGGACGGGG
AAGTGAAGGGCCGCTTGTTGGGCGCCAACCCTGACAAGCTCCGCGAGGCG
GTCTTCCGCTTTCTATGAATGGCGCCATCCACTAGAACAAGTCGCCTCGT
CATTCTCTTCCTCCTCCTTGCTATCTGCGCCCTTGTCTCCTCCTTTTACA
CGGCCCCTGCTCGCGCCGCGGCCTCGGCCGCCTCCCTTCTGCCCTTCCAC
CGGCAGCACAAGAACAAGCAACAGCAGCACAAGTCCATCTTAGCCCGTCT
GTCCACGACGCGGGGAGGGGTGGCAGGAAAGGTGAAGGAGGTGCAGACAT
TGGAGGAGACGGAGGCGGCGTTGAGCGAGGCGGGCAGCAAGCTGGTGGTG
CTAGACTTTACGGCGACATGGTGCGGCCCGTGCAAGCTCATCTCCCCCGT
CTTTGACGCTCTGTCTGAAGAGATCTCCACCAACGAAGCTGTCTTTCTAA
AGGTGGATGTGGACGTCAACGAGGGCACGGCTAGGAAGTTCGAGGTCTTC
CAAATGCCGACTTTCGTGTTCGTCAAGGACGGGGAAGTGAAGGGCCGCTT
GTTGGGCGCCAACCCTGACAAGCTCCGCGAGGCGGTCTTCCGCTTTCTAT
GAATGGCGCCATCCACTAGAACAAGTCGCCTCGTCATTCTCTTCCTCCTC
CTTGCTATCTGCGCCCTTGTCTCCTCCTTTTACACGGCCCCTGCTCGCGC
CGCGGCCTCGGCCGCCTCCCTTCTGCCCTTCCACCGGCAGCACAAGAACA
AGCAACAGCAGCACAAGTCCATCTTAGCCCGTCTGTCCACGACGCGGGGA
GGGGTGGCAGGAAAGGTGAAGGAGGTGCAGACATTGGAGGAGACGGAGGC
GGCGTTGAGCGAGGCGGGCAGCAAGCTGGTGGTGCTAGACTTTACGGCGA
CATGGTGCGGCCCGTGCAAGCTCATCTCCCCCGTCTTTGACGCTCTGTCT
GAAGAGATCTCCACCAACGAAGCTGTCTTTCTAAAGGTGGATGTGGACGT
CAACGAGGGCACGGCTAGGAAGTTCGAGGTCTTCCAAATGCCGACTTTCG
TGTTCGTCAAGGACGGGGAAGTGAAGGGCCGCTTGTTGGGCGCCAACCCT
GACAAGCTCCGCGAGGCGGTCTTCCGCTTTCTATGAATGGCGCCATCCAC
TAGAACAAGTCGCCTCGTCATTCTCTTCCTCCTCCTTGCTATCTGCGCCC
TTGTCTCCTCCTTTTACACGGCCCCTGCTCGCGCCGCGGCCTCGGCCGCC
TCCCTTCTGCCCTTCCACCGGCAGCACAAGAACAAGCAACAGCAGCACAA
GTCCATCTTAGCCCGTCTGTCCACGACGCGGGGAGGGGTGGCAGGAAAGG
TGAAGGAGGTGCAGACATTGGAGGAGACGGAGGCGGCGTTGAGCGAGGCG
GGCAGCAAGCTGGTGGTGCTAGACTTTACGGCGACATGGTGCGGCCCGTG
CAAGCTCATCTCCCCCGTCTTTGACGCTCTGTCTGAAGAGATCTCCACCA
ACGAAGCTGTCTTTCTAAAGGTGGATGTGGACGTCAACGAGGGCACGGCT
AGGAAGTTCGAGGTCTTCCAAATGCCGACTTTCGTGTTCGTCAAGGACGG
GGAAGTGAAGGGCCGCTTGTTGGGCGCCAACCCTGACAAGCTCCGCGAGG
CGGTCTTCCGCTTTCTATGA

Synonyms

Publications