jgi.p|Nanoce1779_2|261775, mRNA_9782 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|261775
Unique NamemRNA_9782
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1079
Alignment locationscaffold_32:39320..40483 -

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Properties
Property NameValue
TranscriptId261861
TrackFilteredModels2
ProteinId261775
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_32supercontigscaffold_32:39320..40483 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|261775gene_9782Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|261775mRNA_9782-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9782CDS_9782Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9782 ID=mRNA_9782|Name=jgi.p|Nanoce1779_2|261775|organism=Nannochloropsis oceanica|type=mRNA|length=1079bp
TCTACTCTCGTGACCACACACGTCCGACGAATTTTGGACGAATAAGGCCC
TGTCCAGAAACTTATGCGTTACTTTGTCTAATTCGTCTATATTTGATGTA
ATCCATCACTTCGTACACATTTTGTGGCGGCGGACGAAGTTATGCCGTCA
CTTCGTACACAAAATCGTGGGCAGCACAAAGTGACGAGAGTAACTTCGTA
CATGATTTGTGGACCCTCACGAAGTTACTTCACCACTCTCTATTTAATCT
GCGCACCACCATGAAGCGGACAGGAGTAATTCGTCACAACAACAGATTCT
AGCATGAATGTGTTAATGGTCTGTGCAAGTCTGCAGGCGCGCAAGTACGC
CGCCTCGTGAACAATGAATTCTATTTGTTCCGCAAAGTCGCTGACTGATC
CTCCTCCCTCTCATTCTCTCTTTCTCTTTCTCTCTCTCTCTCTCTCTCTC
TCTCACACACACACACACACATACAGCTATAGCACGCGTCATGTCAGTGA
CCGACGAGAATGCTCTTCTTCCTGGTCTCCCTTCTCATGAGGAGGAGGAA
GAGGAGATTGAGCTTTATCTCCTCCATCACGACGAAGAACAACAGGAGGA
GGACGAAAACGACTTCCAAGGTTTCGACCTCGAAGTCGAGGACGACAAGA
TTAATGATAACAACAGCTCCATCACCAGCGACACTGATGCCAGTGCCATG
GCCACAGCGGAAACAACTTCTGACACCGGCACCACCCGTACAAGAAACAA
GCCCAGTAGGAAGCCTTCGGGGATTGCACTGGCCTTCGCGAAGCCAGACG
TCTCGCCGGAAGAGGCTGAGGAGTACGTCAAGAAACATCTCATGCCAGAC
GCTATGCTGAGGGAGGGTAATTGGAGAATCAAAGAGGCACCGAGATACCA
TGCTAGTCGCAGCCCAATCTGGACATATGGGGTTATGTACGACAGGCCGG
CCGTGGGGAGCGTGACTGCACAGCGGCGGTGGTAGTGCTTGCCGACGGAG
ACTTGTCGTATAGGCAACGTGTCCATACTTTCCGGCCTAGGAGCGGCTGG
AAACTGCAATATCCATCTGAGAAGTGTCC
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protein sequence of jgi.p|Nanoce1779_2|261775

>mRNA_9782-protein ID=mRNA_9782-protein|Name=jgi.p|Nanoce1779_2|261775|organism=Nannochloropsis oceanica|type=polypeptide|length=165bp
MSVTDENALLPGLPSHEEEEEEIELYLLHHDEEQQEEDENDFQGFDLEVE
DDKINDNNSSITSDTDASAMATAETTSDTGTTRTRNKPSRKPSGIALAFA
KPDVSPEEAEEYVKKHLMPDAMLREGNWRIKEAPRYHASRSPIWTYGVMY
DRPAVGSVTAQRRW*
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mRNA from alignment at scaffold_32:39320..40483-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9782 ID=mRNA_9782|Name=jgi.p|Nanoce1779_2|261775|organism=Nannochloropsis oceanica|type=mRNA|length=1164bp|location=Sequence derived from alignment at scaffold_32:39320..40483- (Nannochloropsis oceanica)
TCTACTCTCGTGACCACACACGTCCGACGAATTTTGGACGAATAAGGCCC
TGTCCAGAAACTTATGCGTTACTTTGTCTAATTCGTCTATATTTGATGTA
ATCCATCACTTCGTACACATTTTGTGGCGGCGGACGAAGTTATGCCGTCA
CTTCGTACACAAAATCGTGGGCAGCACAAAGTGACGAGAGTAACTTCGTA
CATGATTTGTGGACCCTCACGAAGTTACTTCACCACTCTCTATTTAATCT
GCGCACCACCATGAAGCGGACAGGAGTAATTCGTCACAACAACAGATTCT
AGCATGAAGTCACACGAATAAATCCGTGGCTACGAAGTGTGTTAATGGTC
TGTGCAAGTCTGCAGGCGCGCAAGTACGCCGCCTCGTGAACAATGAATTC
TATTTGTTCCGCAAAGTCGCTGACTGATCCTCCTCCCTCTCATTCTCTCT
TTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACATA
CACACACACATACACACACACACACACACGCACACACACGCACACACACG
CACACATACAGCTATAGCACGCGTCATGTCAGTGACCGACGAGAATGCTC
TTCTTCCTGGTCTCCCTTCTCATGAGGAGGAGGAAGAGGAGATTGAGCTT
TATCTCCTCCATCACGACGAAGAACAACAGGAGGAGGACGAAAACGACTT
CCAAGGTTTCGACCTCGAAGTCGAGGACGACAAGATTAATGATAACAACA
GCTCCATCACCAGCGACACTGATGCCAGTGCCATGGCCACAGCGGAAACA
ACTTCTGACACCGGCACCACCCGTACAAGAAACAAGCCCAGTAGGAAGCC
TTCGGGGATTGCACTGGCCTTCGCGAAGCCAGACGTCTCGCCGGAAGAGG
CTGAGGAGTACGTCAAGAAACATCTCATGCCAGACGCTATGCTGAGGGAG
GGTAATTGGAGAATCAAAGAGGCACCGAGATACCATGCTAGTCGCAGCCC
AATCTGGACATATGGGGTTATGTACGACAGGCCGGCCGTGGGGAGCGTGA
CTGCACAGCGGCGGTGGTAGTGCTTGCCGACGGAGACTTGTCGTATAGGC
AACGTGTCCATACTTTCCGGCCTAGGAGCGGCTGGAAACTGCAATATCCA
TCTGAGAAGTGTCC
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Coding sequence (CDS) from alignment at scaffold_32:39320..40483-

>mRNA_9782 ID=mRNA_9782|Name=jgi.p|Nanoce1779_2|261775|organism=Nannochloropsis oceanica|type=CDS|length=495bp|location=Sequence derived from alignment at scaffold_32:39320..40483- (Nannochloropsis oceanica)
ATGTCAGTGACCGACGAGAATGCTCTTCTTCCTGGTCTCCCTTCTCATGA
GGAGGAGGAAGAGGAGATTGAGCTTTATCTCCTCCATCACGACGAAGAAC
AACAGGAGGAGGACGAAAACGACTTCCAAGGTTTCGACCTCGAAGTCGAG
GACGACAAGATTAATGATAACAACAGCTCCATCACCAGCGACACTGATGC
CAGTGCCATGGCCACAGCGGAAACAACTTCTGACACCGGCACCACCCGTA
CAAGAAACAAGCCCAGTAGGAAGCCTTCGGGGATTGCACTGGCCTTCGCG
AAGCCAGACGTCTCGCCGGAAGAGGCTGAGGAGTACGTCAAGAAACATCT
CATGCCAGACGCTATGCTGAGGGAGGGTAATTGGAGAATCAAAGAGGCAC
CGAGATACCATGCTAGTCGCAGCCCAATCTGGACATATGGGGTTATGTAC
GACAGGCCGGCCGTGGGGAGCGTGACTGCACAGCGGCGGTGGTAG
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Synonyms
Publications