jgi.p|Nanoce1779_2|605596, mRNA_9815 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|605596
Unique Name	mRNA_9815
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	3246
Alignment location	scaffold_32:177904..181149 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	605682
Track	FilteredModels2
ProteinId	605596

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_32	supercontig	scaffold_32:177904..181149 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|605596	gene_9815	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|605596	mRNA_9815-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9815	CDS_9815	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_32:177904..181149+
coding sequence from alignment at scaffold_32:177904..181149+

mRNA sequence

>mRNA_9815 ID=mRNA_9815|Name=jgi.p|Nanoce1779_2|605596|organism=Nannochloropsis oceanica|type=mRNA|length=3246bp
TGTTCAGTGCGTACTCGTTCCACCTAAGCTTCCCCCTTGTTTTTCCCAGG
AGCTTGTCATCAACGATCCTCACGATGACTCCATCGTTTAGATGCACGTG
CAGTCTCTATGGCACGGACCCTTGAATGTGTTGGGGCTTGCTCCAGTCAG
AACAACATTGCCGTTGCTGTTGGTGACGCCTGCTGCCTCGTCGCTCCATC
TTAAGGCAACATCAACCGACTCCCTGATCGCTGAAATGAAAGGCGATGCC
AGTGTGGCGTTATTTGGGTAAACTTGTTACCAACACCGGCAAGCAAGTTT
GTCGGCATACGGAAGGATCAAGATGTGCACAACAGTTCCTTGAGCATGTA
GCGGCACATTGCAGGCGTTTTGTGCTTTATAATCACAACAACGTGTTAGT
TCACCTCCAAAAAAAAAGACTTACATTTTCTCATTGTACTCTGTGTCTAT
AATGCACAGCTTTCCTTGCCCCCCTTACGACCACAGACAGAGAAAGATAG
AGTCTACCAAAGTACGAAGGAAATTGGTGCTACCAATTAAAAGAACAACA
AATTCATGATCGTGGTTTTGGGTTTCCCTTGCCTTTATTTTGTTGTTCGT
CAGAGCCATTTCGCTCAATCGCTTCTTCCTCTTGCCCTCTGTTGTCTCAC
CCCCTTGCGATGACCATGTCGGTCAGGATGACCCATATGCCCCTACAAGA
GGCACGTATCAATTAGGGGGTGATGTGGCCGTGCACCATAGGCTCGATGC
AATGCTCCTTCAGATTGCTGTAGGAGATGGCTGTACTCTGGTGATGATCC
CTGAGAGCAGATGATGGTGGCATATGAGATGGTCGGTTGGTCAGGCTCCG
CTGTTGGCCTTACAACCGCCTCCACAAAATGTGTAAGATCTGATCTGCAT
TGTAAGTGTAGATGAAGGCATCATCCTCAAGGATATTTATAAGTTTTTGC
AGTGGAGTGTGTCCGCTCGCCAATTGTAAAATTGACGTCTCGCTGTACCT
TTGGCTCCCAAGTAGGTGTAGAATATCATCATATATTTTTTGGGTACTCC
ACTTCGTTGTTACTGAGGATGATTTGCATTCTTGCCCATTGAGGCACTAT
TGTAGGACCCCCACTTGCTGTGCAGTGTCTGTCATGAGACTATCTGAACT
TCTTGAACCCACCCTCAAATAGGCAACAGAAACATGCCGGCAACTTCTTC
ATACATCAAGCTTTTAACAAATATTGCGTGTGCTTTGTTTTCATATATTG
CCTAATTTCAAATTAATTGAATGGTATCCAGGCGCCTCAAAAATTTTTCC
ATTTAACAGCAACTCCCAAGACTGCAGTCGAGATTTCCAGTCGTTCACCG
AGCCCGAACCAAATGAATACATCTGTTAAAGATTTCTACAAGTTTTATTC
GAGGGATATTGAGGCTAGTGCTTGGGGCTCTGGGCTACCCATCCATTCTC
GCATACCGAAATCTGGCTTGGGGATCTTCGTTATTGTGTGGACTGAAAGT
GATGAAAAGGGCCAACAAAATATTAAAAGATGCCTGCGATCATTGGATGT
GTTCTTCAACGATCGCTTTGATTACCTGGTCCTTCTATTGCATGAAGATT
TATCGCAAGAGGTCATTGACACCGTTCGGACATGGAAACGTTCAAGAATT
GAATTTGTTGGGCATTCTTTGATCGATTCAGAGTACTTGAAAGTCTTTTA
ACAAACTGGATTCAAAATGTTTGACCGCCAGGCCGGTAAAGGAACTGGAT
ATTCGCATATATTTCGTACAAACATCTACCGCTGGCCATTGCATCGAGCA
CTTTTTGGATACCGATACGTGTTCAAACTCGATACAGATGCAGCTCTGGT
TGAAAGGATCGATAACGACCTGTTTGAGGATATGAAAATCGTGAAATCAT
GGCAACCTACGTGACTTCAATCATGGACGCTGAATTTGTGTGGGAGAATT
TGTATGAGACTGTCGAGGATATTTTGAGGTACAATCAGCTCGAGCCTGTT
CAAGATTTGTATCGAATGCCGAAATTGTGGACATGGCATGGATATGCATT
CGTTTTCGACACCGCATTTGCGAGGTCACCTGCCTACTTGAACTCAGTCT
GGCATCTCGACAATGTTCATGGTGCGTTTAAACATCGATGGGGTGATCCC
CAGTTGTATCTACTCACTTCAATGTTTCTCGAAGCCAATCAAACCGAACA
ACTCGATATCCGCACTGCTCATCGGGATAAATGTGCGCACGCCAAGAGCC
TATCGTCTTGCCCACAAGATGTATCTTTGATGTGGACACATAATCCAAAG
TCGAACTCACTCATAAAGTCCAACGACTGGATGTGGAATCCAAGTCAACC
ATTCGACTATTCTTCTACACTGTGGCCTCAGCCGGAGCTCTCAAAACCTC
CATACAATTTTTCGAATCAAACGCAATGAACAAGGTGTAGCCTACCTGCA
GCAAGGCTTAGGGGTAAAGAGATCGAGCCGAAGACGTTCGTTCCTACCAA
AAAACAAATAAATCGAAAAACTGTCAAGCGTGGGGCATCAAATACACCAC
GATATTGAACTAACAAAATATAGCTACCTATTTAGTTGAACCGAGTTGTT
GGACGTTCTGTCATAGGAGCGCAAGGAGAGCGTGCGATTTTGCAAAGGAA
CACAAAATACATCGGATCACATCATCTTGCGGATGCTAGGAAAAATGCCT
TTGCCTCGGGATAAAATACATGCCCCCTCGGACAGCTTGCATACGGAAAA
TTGCCGAGAAAACAATAGAGAAAGCGGCCGACTTGATGGAGGGGGAGGGA
GGAAAGCAAGTAGCAGAAGGTTTTGGTGGACGAGATACATGTACAAGGGG
CTGACAGTGTAAGAACGAGCTCATACATCCAGAAGGAGGAACGAGGAGTT
GGAGAGTGCATCCGAGAGAGGTTTGTCTCATATACGAAATACGGTGGAGA
GGAAGAGAAATGAGAAGGAGAGGACAAAAGGGTGGGAGGACATTTCCAGG
GATGAGATGGGATAACCCCAGGGTAGGACTGCCCCTTATTTAGTAAGTGG
CAAAAAATCGTGGGCTTGAAAAGAGCGAGGGACGCCTTCTCTCAAATGCA
AAGAAAGAAGAAGGGAATCAAACTCTGGAGAGTGCGAGCGCTTCAGTGAT
GGGGGGCTCCAGTGGGAGAAAAAGGAGGGGAATGGGCAGTCGTTAAAAGG
GAGACATGTCCTGCAATTGGGAGAGGTTGCAGCGCGCGCAGCCCAC

protein sequence of jgi.p|Nanoce1779_2|605596

>mRNA_9815-protein ID=mRNA_9815-protein|Name=jgi.p|Nanoce1779_2|605596|organism=Nannochloropsis oceanica|type=polypeptide|length=177bp
MATYVTSIMDAEFVWENLYETVEDILRYNQLEPVQDLYRMPKLWTWHGYA
FVFDTAFARSPAYLNSVWHLDNVHGAFKHRWGDPQLYLLTSMFLEANQTE
QLDIRTAHRDKCAHAKSLSSCPQDVSLMWTHNPKSNSLIKSNDWMWNPSQ
PFDYSSTLWPQPELSKPPYNFSNQTQ*

mRNA from alignment at scaffold_32:177904..181149+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9815 ID=mRNA_9815|Name=jgi.p|Nanoce1779_2|605596|organism=Nannochloropsis oceanica|type=mRNA|length=3246bp|location=Sequence derived from alignment at scaffold_32:177904..181149+ (Nannochloropsis oceanica)
TGTTCAGTGCGTACTCGTTCCACCTAAGCTTCCCCCTTGTTTTTCCCAGG
AGCTTGTCATCAACGATCCTCACGATGACTCCATCGTTTAGATGCACGTG
CAGTCTCTATGGCACGGACCCTTGAATGTGTTGGGGCTTGCTCCAGTCAG
AACAACATTGCCGTTGCTGTTGGTGACGCCTGCTGCCTCGTCGCTCCATC
TTAAGGCAACATCAACCGACTCCCTGATCGCTGAAATGAAAGGCGATGCC
AGTGTGGCGTTATTTGGGTAAACTTGTTACCAACACCGGCAAGCAAGTTT
GTCGGCATACGGAAGGATCAAGATGTGCACAACAGTTCCTTGAGCATGTA
GCGGCACATTGCAGGCGTTTTGTGCTTTATAATCACAACAACGTGTTAGT
TCACCTCCAAAAAAAAAGACTTACATTTTCTCATTGTACTCTGTGTCTAT
AATGCACAGCTTTCCTTGCCCCCCTTACGACCACAGACAGAGAAAGATAG
AGTCTACCAAAGTACGAAGGAAATTGGTGCTACCAATTAAAAGAACAACA
AATTCATGATCGTGGTTTTGGGTTTCCCTTGCCTTTATTTTGTTGTTCGT
CAGAGCCATTTCGCTCAATCGCTTCTTCCTCTTGCCCTCTGTTGTCTCAC
CCCCTTGCGATGACCATGTCGGTCAGGATGACCCATATGCCCCTACAAGA
GGCACGTATCAATTAGGGGGTGATGTGGCCGTGCACCATAGGCTCGATGC
AATGCTCCTTCAGATTGCTGTAGGAGATGGCTGTACTCTGGTGATGATCC
CTGAGAGCAGATGATGGTGGCATATGAGATGGTCGGTTGGTCAGGCTCCG
CTGTTGGCCTTACAACCGCCTCCACAAAATGTGTAAGATCTGATCTGCAT
TGTAAGTGTAGATGAAGGCATCATCCTCAAGGATATTTATAAGTTTTTGC
AGTGGAGTGTGTCCGCTCGCCAATTGTAAAATTGACGTCTCGCTGTACCT
TTGGCTCCCAAGTAGGTGTAGAATATCATCATATATTTTTTGGGTACTCC
ACTTCGTTGTTACTGAGGATGATTTGCATTCTTGCCCATTGAGGCACTAT
TGTAGGACCCCCACTTGCTGTGCAGTGTCTGTCATGAGACTATCTGAACT
TCTTGAACCCACCCTCAAATAGGCAACAGAAACATGCCGGCAACTTCTTC
ATACATCAAGCTTTTAACAAATATTGCGTGTGCTTTGTTTTCATATATTG
CCTAATTTCAAATTAATTGAATGGTATCCAGGCGCCTCAAAAATTTTTCC
ATTTAACAGCAACTCCCAAGACTGCAGTCGAGATTTCCAGTCGTTCACCG
AGCCCGAACCAAATGAATACATCTGTTAAAGATTTCTACAAGTTTTATTC
GAGGGATATTGAGGCTAGTGCTTGGGGCTCTGGGCTACCCATCCATTCTC
GCATACCGAAATCTGGCTTGGGGATCTTCGTTATTGTGTGGACTGAAAGT
GATGAAAAGGGCCAACAAAATATTAAAAGATGCCTGCGATCATTGGATGT
GTTCTTCAACGATCGCTTTGATTACCTGGTCCTTCTATTGCATGAAGATT
TATCGCAAGAGGTCATTGACACCGTTCGGACATGGAAACGTTCAAGAATT
GAATTTGTTGGGCATTCTTTGATCGATTCAGAGTACTTGAAAGTCTTTTA
ACAAACTGGATTCAAAATGTTTGACCGCCAGGCCGGTAAAGGAACTGGAT
ATTCGCATATATTTCGTACAAACATCTACCGCTGGCCATTGCATCGAGCA
CTTTTTGGATACCGATACGTGTTCAAACTCGATACAGATGCAGCTCTGGT
TGAAAGGATCGATAACGACCTGTTTGAGGATATGAAAATCGTGAAATCAT
GGCAACCTACGTGACTTCAATCATGGACGCTGAATTTGTGTGGGAGAATT
TGTATGAGACTGTCGAGGATATTTTGAGGTACAATCAGCTCGAGCCTGTT
CAAGATTTGTATCGAATGCCGAAATTGTGGACATGGCATGGATATGCATT
CGTTTTCGACACCGCATTTGCGAGGTCACCTGCCTACTTGAACTCAGTCT
GGCATCTCGACAATGTTCATGGTGCGTTTAAACATCGATGGGGTGATCCC
CAGTTGTATCTACTCACTTCAATGTTTCTCGAAGCCAATCAAACCGAACA
ACTCGATATCCGCACTGCTCATCGGGATAAATGTGCGCACGCCAAGAGCC
TATCGTCTTGCCCACAAGATGTATCTTTGATGTGGACACATAATCCAAAG
TCGAACTCACTCATAAAGTCCAACGACTGGATGTGGAATCCAAGTCAACC
ATTCGACTATTCTTCTACACTGTGGCCTCAGCCGGAGCTCTCAAAACCTC
CATACAATTTTTCGAATCAAACGCAATGAACAAGGTGTAGCCTACCTGCA
GCAAGGCTTAGGGGTAAAGAGATCGAGCCGAAGACGTTCGTTCCTACCAA
AAAACAAATAAATCGAAAAACTGTCAAGCGTGGGGCATCAAATACACCAC
GATATTGAACTAACAAAATATAGCTACCTATTTAGTTGAACCGAGTTGTT
GGACGTTCTGTCATAGGAGCGCAAGGAGAGCGTGCGATTTTGCAAAGGAA
CACAAAATACATCGGATCACATCATCTTGCGGATGCTAGGAAAAATGCCT
TTGCCTCGGGATAAAATACATGCCCCCTCGGACAGCTTGCATACGGAAAA
TTGCCGAGAAAACAATAGAGAAAGCGGCCGACTTGATGGAGGGGGAGGGA
GGAAAGCAAGTAGCAGAAGGTTTTGGTGGACGAGATACATGTACAAGGGG
CTGACAGTGTAAGAACGAGCTCATACATCCAGAAGGAGGAACGAGGAGTT
GGAGAGTGCATCCGAGAGAGGTTTGTCTCATATACGAAATACGGTGGAGA
GGAAGAGAAATGAGAAGGAGAGGACAAAAGGGTGGGAGGACATTTCCAGG
GATGAGATGGGATAACCCCAGGGTAGGACTGCCCCTTATTTAGTAAGTGG
CAAAAAATCGTGGGCTTGAAAAGAGCGAGGGACGCCTTCTCTCAAATGCA
AAGAAAGAAGAAGGGAATCAAACTCTGGAGAGTGCGAGCGCTTCAGTGAT
GGGGGGCTCCAGTGGGAGAAAAAGGAGGGGAATGGGCAGTCGTTAAAAGG
GAGACATGTCCTGCAATTGGGAGAGGTTGCAGCGCGCGCAGCCCAC

Coding sequence (CDS) from alignment at scaffold_32:177904..181149+

>mRNA_9815 ID=mRNA_9815|Name=jgi.p|Nanoce1779_2|605596|organism=Nannochloropsis oceanica|type=CDS|length=531bp|location=Sequence derived from alignment at scaffold_32:177904..181149+ (Nannochloropsis oceanica)
ATGGCAACCTACGTGACTTCAATCATGGACGCTGAATTTGTGTGGGAGAA
TTTGTATGAGACTGTCGAGGATATTTTGAGGTACAATCAGCTCGAGCCTG
TTCAAGATTTGTATCGAATGCCGAAATTGTGGACATGGCATGGATATGCA
TTCGTTTTCGACACCGCATTTGCGAGGTCACCTGCCTACTTGAACTCAGT
CTGGCATCTCGACAATGTTCATGGTGCGTTTAAACATCGATGGGGTGATC
CCCAGTTGTATCTACTCACTTCAATGTTTCTCGAAGCCAATCAAACCGAA
CAACTCGATATCCGCACTGCTCATCGGGATAAATGTGCGCACGCCAAGAG
CCTATCGTCTTGCCCACAAGATGTATCTTTGATGTGGACACATAATCCAA
AGTCGAACTCACTCATAAAGTCCAACGACTGGATGTGGAATCCAAGTCAA
CCATTCGACTATTCTTCTACACTGTGGCCTCAGCCGGAGCTCTCAAAACC
TCCATACAATTTTTCGAATCAAACGCAATGA

Synonyms

Publications