jgi.p|Nanoce1779_2|578855, mRNA_2049 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|578855
Unique NamemRNA_2049
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length981
Alignment locationscaffold_4:642672..643652 -

Link to JBrowse

Properties
Property NameValue
TranscriptId578941
TrackFilteredModels2
ProteinId578855
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:642672..643652 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578855gene_2049Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578855mRNA_2049-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2049CDS_2049Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2049 ID=mRNA_2049|Name=jgi.p|Nanoce1779_2|578855|organism=Nannochloropsis oceanica|type=mRNA|length=981bp
ACAGCACTACCTGGGACCGATTCCCATCATGTGTGTCACGACATCGTTGC
TCGTCCTGGTCGTTGCCTGCTACTGTCTGGCCGTACCAACTCTGGCCTTC
TTTCCAAGCACCGGCTCCCCGTCCACGGTGACGACTCAAATGATGGCCAC
TGGCCGGGCAGGCCAGGAAGACAGCCGACGCAGCGCCCTCAGCAAGACTC
TGGCTGGCGGACTGGGTGCCTTGTCCTTGGCGACTGTTACACTGGGCGTG
TCCCCCATTCCGGCGGCCGCCAAGGGCGTGAAGCGGTTGAAAAATGCGCC
CACCGTGAAATTGGCAAATGGGGTTGAGTATCAGGACATGACGTTGGGCT
CCGGTGCGACGCCGCATGAAGGGGATCGTGTTGCCGTTCACTATAGCTTG
TACTACAATGGCTTAGAGGTCGAGTCCAGCCGGGATTCGAGTGGGCTGGC
AGCGCGCCCGTATGGATTTAACTGGGGCACGGATAAGGGTACGGGGTCCA
TTTGCAAGGGGGTGCAGCTGGGGATGGAGGGAATGCAGATCGGTGGGCGC
CGTAAGATTACTGTGCCATCTGATTTGGCATTTGGGAAGAAGGGGTTGCC
GCCGTTTATTCCTGGGGATGCGACGGTGCTTTTTGACGTGTCGATATGGA
GCATTAAGCCTGCGGGGACGAATCCGAATTTGACGTTGCCTGGTCAGCAG
AATTACTTCTAGGTGACTGATTGGAGGGAAGAGGACGAGTATCATAACAA
GAGATGGGAAATATGGGGAACAGGATCATCGATGGGAGACAGTGCTCAGA
TGTGTTGGTGTATGATCGTTTCTTTTGTGCGCAGCTTGCATGCGGGGCGC
GAGGACAGGGAGAGGGGTTGTCAGGAGGATGAGAGTTGGGGTTTGTGTTG
CTGGCCACAGCTGGAAGACATTCGTTCAAATGTCCGTGACCATAGCGAGA
AAAAAGGCCAGTGTACGACACAGTCTCGGTG
back to top

protein sequence of jgi.p|Nanoce1779_2|578855

>mRNA_2049-protein ID=mRNA_2049-protein|Name=jgi.p|Nanoce1779_2|578855|organism=Nannochloropsis oceanica|type=polypeptide|length=228bp
MCVTTSLLVLVVACYCLAVPTLAFFPSTGSPSTVTTQMMATGRAGQEDSR
RSALSKTLAGGLGALSLATVTLGVSPIPAAAKGVKRLKNAPTVKLANGVE
YQDMTLGSGATPHEGDRVAVHYSLYYNGLEVESSRDSSGLAARPYGFNWG
TDKGTGSICKGVQLGMEGMQIGGRRKITVPSDLAFGKKGLPPFIPGDATV
LFDVSIWSIKPAGTNPNLTLPGQQNYF*
back to top

mRNA from alignment at scaffold_4:642672..643652-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2049 ID=mRNA_2049|Name=jgi.p|Nanoce1779_2|578855|organism=Nannochloropsis oceanica|type=mRNA|length=981bp|location=Sequence derived from alignment at scaffold_4:642672..643652- (Nannochloropsis oceanica)
ACAGCACTACCTGGGACCGATTCCCATCATGTGTGTCACGACATCGTTGC
TCGTCCTGGTCGTTGCCTGCTACTGTCTGGCCGTACCAACTCTGGCCTTC
TTTCCAAGCACCGGCTCCCCGTCCACGGTGACGACTCAAATGATGGCCAC
TGGCCGGGCAGGCCAGGAAGACAGCCGACGCAGCGCCCTCAGCAAGACTC
TGGCTGGCGGACTGGGTGCCTTGTCCTTGGCGACTGTTACACTGGGCGTG
TCCCCCATTCCGGCGGCCGCCAAGGGCGTGAAGCGGTTGAAAAATGCGCC
CACCGTGAAATTGGCAAATGGGGTTGAGTATCAGGACATGACGTTGGGCT
CCGGTGCGACGCCGCATGAAGGGGATCGTGTTGCCGTTCACTATAGCTTG
TACTACAATGGCTTAGAGGTCGAGTCCAGCCGGGATTCGAGTGGGCTGGC
AGCGCGCCCGTATGGATTTAACTGGGGCACGGATAAGGGTACGGGGTCCA
TTTGCAAGGGGGTGCAGCTGGGGATGGAGGGAATGCAGATCGGTGGGCGC
CGTAAGATTACTGTGCCATCTGATTTGGCATTTGGGAAGAAGGGGTTGCC
GCCGTTTATTCCTGGGGATGCGACGGTGCTTTTTGACGTGTCGATATGGA
GCATTAAGCCTGCGGGGACGAATCCGAATTTGACGTTGCCTGGTCAGCAG
AATTACTTCTAGGTGACTGATTGGAGGGAAGAGGACGAGTATCATAACAA
GAGATGGGAAATATGGGGAACAGGATCATCGATGGGAGACAGTGCTCAGA
TGTGTTGGTGTATGATCGTTTCTTTTGTGCGCAGCTTGCATGCGGGGCGC
GAGGACAGGGAGAGGGGTTGTCAGGAGGATGAGAGTTGGGGTTTGTGTTG
CTGGCCACAGCTGGAAGACATTCGTTCAAATGTCCGTGACCATAGCGAGA
AAAAAGGCCAGTGTACGACACAGTCTCGGTG
back to top

Coding sequence (CDS) from alignment at scaffold_4:642672..643652-

>mRNA_2049 ID=mRNA_2049|Name=jgi.p|Nanoce1779_2|578855|organism=Nannochloropsis oceanica|type=CDS|length=684bp|location=Sequence derived from alignment at scaffold_4:642672..643652- (Nannochloropsis oceanica)
ATGTGTGTCACGACATCGTTGCTCGTCCTGGTCGTTGCCTGCTACTGTCT
GGCCGTACCAACTCTGGCCTTCTTTCCAAGCACCGGCTCCCCGTCCACGG
TGACGACTCAAATGATGGCCACTGGCCGGGCAGGCCAGGAAGACAGCCGA
CGCAGCGCCCTCAGCAAGACTCTGGCTGGCGGACTGGGTGCCTTGTCCTT
GGCGACTGTTACACTGGGCGTGTCCCCCATTCCGGCGGCCGCCAAGGGCG
TGAAGCGGTTGAAAAATGCGCCCACCGTGAAATTGGCAAATGGGGTTGAG
TATCAGGACATGACGTTGGGCTCCGGTGCGACGCCGCATGAAGGGGATCG
TGTTGCCGTTCACTATAGCTTGTACTACAATGGCTTAGAGGTCGAGTCCA
GCCGGGATTCGAGTGGGCTGGCAGCGCGCCCGTATGGATTTAACTGGGGC
ACGGATAAGGGTACGGGGTCCATTTGCAAGGGGGTGCAGCTGGGGATGGA
GGGAATGCAGATCGGTGGGCGCCGTAAGATTACTGTGCCATCTGATTTGG
CATTTGGGAAGAAGGGGTTGCCGCCGTTTATTCCTGGGGATGCGACGGTG
CTTTTTGACGTGTCGATATGGAGCATTAAGCCTGCGGGGACGAATCCGAA
TTTGACGTTGCCTGGTCAGCAGAATTACTTCTAG
back to top
Synonyms
Publications