jgi.p|Nanoce1779_2|609074, mRNA_9534 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|609074
Unique NamemRNA_9534
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1189
Alignment locationscaffold_44:35081..36395 -

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Properties
Property NameValue
TranscriptId609160
TrackFilteredModels2
ProteinId609074
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_44supercontigscaffold_44:35081..36395 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609074gene_9534Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609074mRNA_9534-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9534CDS_9534Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9534 ID=mRNA_9534|Name=jgi.p|Nanoce1779_2|609074|organism=Nannochloropsis oceanica|type=mRNA|length=1189bp
AGCTAGCTGGACTGAATCAAGGACAGCAAGCATGTCGTTCGGGCCGAAAA
CGGGCTACCGCGACGGCGGCAATAGAGGCGGACAGGACCGATTCAAGTGG
GAGGATGTGAAAGACGAACACTACCGTGAGCATTATTTGGGACACAGCCT
CAAGGCCCCCGTCGGACGCTGGCAGAAAGGCAAAGACCTAATGTGGTACA
CCAAAGCAGACAAAGGAGGGGAGAAAGGGAAAGAGGATGCGGAGGCGCAA
CGACGGAGGGAGTTAGCGGAGTTTCGACGACGGGACGAAGACATGATTAA
TGCTGCCTTGGGGTTGGCACCGGCACGTCAGGCAGTAGTAGAGACTACAC
TCGATGCAAGTGAGCTGAAACAGCTGCTGGCAAGGGGGGCGAGCGAGAGG
GGGGATATGGATGCAGAGCGCGTGGAGGGTCTCGGAGCAGCGCCTGCAGC
GAGGCACGAGCACTTGCCCAAGGGAAAGAGTATGGTTGAGCGAGAGATTG
AAAGGATGAAGAAAGAACAGGCGGAGGGGAGAGGTTTTGAATACGAGGAG
GATGCGAGTCATATGCATGAGGAAGAAGGGAACGATGTGGTGAAGGACGG
AGGGGGAAAGAGGAAGAAGAATAGAGATGAAGACAAGGAGAAGAAGGAGA
AGAAAAAGAGGAAGAAGGAGGAAAAGAAAAAGGAGGAAAAGAAGAAAAAG
AAGGTGGTGAAAAAGGAGCGAAAGAAGGCAAAGAAAGCGATGCGCAAGGA
AGAAGATGATGAGGGGGCAGGAAGGGAGGGAGGTCGTGGCCAAGGACGCT
CCGAGAGGGGTCGAAGCTCGAGCGACAACAGCTGCAGGAGCAGCAGCGCC
GGCCCCGAGCATCGCATGCGACACGTATCGATAGACAAAACTCACCATGA
TGGTGCAGAGGAGAGGCAGAGGGAGGCGGGGCGCTGTGGGGGAAAACGCC
CTGAAAGAGAGAGAGGCCGAAGCGCCAGCCGCAGCAGTAGGAGCGCCAGT
CCCGATGACCGGAAGCGACGGCGACTACGGACAGAGAGCATATCACGCTC
CAGGTCCAGACCTCGTAATTCTTATGTCCGTGAGCAGGGCCGCCGCCGCG
GGAGATAATCATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
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protein sequence of jgi.p|Nanoce1779_2|609074

>mRNA_9534-protein ID=mRNA_9534-protein|Name=jgi.p|Nanoce1779_2|609074|organism=Nannochloropsis oceanica|type=polypeptide|length=359bp
MSFGPKTGYRDGGNRGGQDRFKWEDVKDEHYREHYLGHSLKAPVGRWQKG
KDLMWYTKADKGGEKGKEDAEAQRRRELAEFRRRDEDMINAALGLAPARQ
AVVETTLDASELKQLLARGASERGDMDAERVEGLGAAPAARHEHLPKGKS
MVEREIERMKKEQAEGRGFEYEEDASHMHEEEGNDVVKDGGGKRKKNRDE
DKEKKEKKKRKKEEKKKEEKKKKKVVKKERKKAKKAMRKEEDDEGAGREG
GRGQGRSERGRSSSDNSCRSSSAGPEHRMRHVSIDKTHHDGAEERQREAG
RCGGKRPERERGRSASRSSRSASPDDRKRRRLRTESISRSRSRPRNSYVR
EQGRRRGR*
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mRNA from alignment at scaffold_44:35081..36395-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9534 ID=mRNA_9534|Name=jgi.p|Nanoce1779_2|609074|organism=Nannochloropsis oceanica|type=mRNA|length=1315bp|location=Sequence derived from alignment at scaffold_44:35081..36395- (Nannochloropsis oceanica)
AGCTAGCTGGACTGAATCAAGGACAGCAAGCATGTCGTTCGGGCCGAAAA
CGGGCTACCGCGACGGCGGCAATAGAGGCGGACAGGACCGATTCAAGTGG
GAGGATGTGAAAGACGGTAGGCGTGGTGCTTGATTGGGTGGGTGGGGTGA
GGAATGATCAGCATGGACATGACTCATATCTCTATTTTCCTCCTTGCCCG
TTCTCCTTCCCTCCTTCCCCGCTCCTTCCAACCCCTTCGTAGAACACTAC
CGTGAGCATTATTTGGGACACAGCCTCAAGGCCCCCGTCGGACGCTGGCA
GAAAGGCAAAGACCTAATGTGGTACACCAAAGCAGACAAAGGAGGGGAGA
AAGGGAAAGAGGATGCGGAGGCGCAACGACGGAGGGAGTTAGCGGAGTTT
CGACGACGGGACGAAGACATGATTAATGCTGCCTTGGGGTTGGCACCGGC
ACGTCAGGCAGTAGTAGAGACTACACTCGATGCAAGTGAGCTGAAACAGC
TGCTGGCAAGGGGGGCGAGCGAGAGGGGGGATATGGATGCAGAGCGCGTG
GAGGGTCTCGGAGCAGCGCCTGCAGCGAGGCACGAGCACTTGCCCAAGGG
AAAGAGTATGGTTGAGCGAGAGATTGAAAGGATGAAGAAAGAACAGGCGG
AGGGGAGAGGTTTTGAATACGAGGAGGATGCGAGTCATATGCATGAGGAA
GAAGGGAACGATGTGGTGAAGGACGGAGGGGGAAAGAGGAAGAAGAATAG
AGATGAAGACAAGGAGAAGAAGGAGAAGAAAAAGAGGAAGAAGGAGGAAA
AGAAAAAGGAGGAAAAGAAGAAAAAGAAGGTGGTGAAAAAGGAGCGAAAG
AAGGCAAAGAAAGCGATGCGCAAGGAAGAAGATGATGAGGGGGCAGGAAG
GGAGGGAGGTCGTGGCCAAGGACGCTCCGAGAGGGGTCGAAGCTCGAGCG
ACAACAGCTGCAGGAGCAGCAGCGCCGGCCCCGAGCATCGCATGCGACAC
GTATCGATAGACAAAACTCACCATGATGGTGCAGAGGAGAGGCAGAGGGA
GGCGGGGCGCTGTGGGGGAAAACGCCCTGAAAGAGAGAGAGGCCGAAGCG
CCAGCCGCAGCAGTAGGAGCGCCAGTCCCGATGACCGGAAGCGACGGCGA
CTACGGACAGAGAGCATATCACGCTCCAGGTCCAGACCTCGTAATTCTTA
TGTCCGTGAGCAGGGCCGCCGCCGCGGGAGATAATCATGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAG
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Coding sequence (CDS) from alignment at scaffold_44:35081..36395-

>mRNA_9534 ID=mRNA_9534|Name=jgi.p|Nanoce1779_2|609074|organism=Nannochloropsis oceanica|type=CDS|length=2154bp|location=Sequence derived from alignment at scaffold_44:35081..36395- (Nannochloropsis oceanica)
AACACTACCGTGAGCATTATTTGGGACACAGCCTCAAGGCCCCCGTCGGA
CGCTGGCAGAAAGGCAAAGACCTAATGTGGTACACCAAAGCAGACAAAGG
AGGGGAGAAAGGGAAAGAGGATGCGGAGGCGCAACGACGGAGGGAGTTAG
CGGAGTTTCGACGACGGGACGAAGACATGATTAATGCTGCCTTGGGGTTG
GCACCGGCACGTCAGGCAGTAGTAGAGACTACACTCGATGCAAGTGAGCT
GAAACAGCTGCTGGCAAGGGGGGCGAGCGAGAGGGGGGATATGGATGCAG
AGCGCGTGGAGGGTCTCGGAGCAGCGCCTGCAGCGAGGCACGAGCACTTG
CCCAAGGGAAAGAGTATGGTTGAGCGAGAGATTGAAAGGATGAAGAAAGA
ACAGGCGGAGGGGAGAGGTTTTGAATACGAGGAGGATGCGAGTCATATGC
ATGAGGAAGAAGGGAACGATGTGGTGAAGGACGGAGGGGGAAAGAGGAAG
AAGAATAGAGATGAAGACAAGGAGAAGAAGGAGAAGAAAAAGAGGAAGAA
GGAGGAAAAGAAAAAGGAGGAAAAGAAGAAAAAGAAGGTGGTGAAAAAGG
AGCGAAAGAAGGCAAAGAAAGCGATGCGCAAGGAAGAAGATGATGAGGGG
GCAGGAAGGGAGGGAGGTCGTGGCCAAGGACGCTCCGAGAGGGGTCGAAG
CTCGAGCGACAACAGCTGCAGGAGCAGCAGCGCCGGCCCCGAGCATCGCA
TGCGACACGTATCGATAGACAAAACTCACCATGATGGTGCAGAGGAGAGG
CAGAGGGAGGCGGGGCGCTGTGGGGGAAAACGCCCTGAAAGAGAGAGAGG
CCGAAGCGCCAGCCGCAGCAGTAGGAGCGCCAGTCCCGATGACCGGAAGC
GACGGCGACTACGGACAGAGAGCATATCACGCTCCAGGTCCAGACCTCGT
AATTCTTATGTCCGTGAGCAGGGCCGCCGCCGCGGGAGATAAATGTCGTT
CGGGCCGAAAACGGGCTACCGCGACGGCGGCAATAGAGGCGGACAGGACC
GATTCAAGTGGGAGGATGTGAAAGACGAACACTACCGTGAGCATTATTTG
GGACACAGCCTCAAGGCCCCCGTCGGACGCTGGCAGAAAGGCAAAGACCT
AATGTGGTACACCAAAGCAGACAAAGGAGGGGAGAAAGGGAAAGAGGATG
CGGAGGCGCAACGACGGAGGGAGTTAGCGGAGTTTCGACGACGGGACGAA
GACATGATTAATGCTGCCTTGGGGTTGGCACCGGCACGTCAGGCAGTAGT
AGAGACTACACTCGATGCAAGTGAGCTGAAACAGCTGCTGGCAAGGGGGG
CGAGCGAGAGGGGGGATATGGATGCAGAGCGCGTGGAGGGTCTCGGAGCA
GCGCCTGCAGCGAGGCACGAGCACTTGCCCAAGGGAAAGAGTATGGTTGA
GCGAGAGATTGAAAGGATGAAGAAAGAACAGGCGGAGGGGAGAGGTTTTG
AATACGAGGAGGATGCGAGTCATATGCATGAGGAAGAAGGGAACGATGTG
GTGAAGGACGGAGGGGGAAAGAGGAAGAAGAATAGAGATGAAGACAAGGA
GAAGAAGGAGAAGAAAAAGAGGAAGAAGGAGGAAAAGAAAAAGGAGGAAA
AGAAGAAAAAGAAGGTGGTGAAAAAGGAGCGAAAGAAGGCAAAGAAAGCG
ATGCGCAAGGAAGAAGATGATGAGGGGGCAGGAAGGGAGGGAGGTCGTGG
CCAAGGACGCTCCGAGAGGGGTCGAAGCTCGAGCGACAACAGCTGCAGGA
GCAGCAGCGCCGGCCCCGAGCATCGCATGCGACACGTATCGATAGACAAA
ACTCACCATGATGGTGCAGAGGAGAGGCAGAGGGAGGCGGGGCGCTGTGG
GGGAAAACGCCCTGAAAGAGAGAGAGGCCGAAGCGCCAGCCGCAGCAGTA
GGAGCGCCAGTCCCGATGACCGGAAGCGACGGCGACTACGGACAGAGAGC
ATATCACGCTCCAGGTCCAGACCTCGTAATTCTTATGTCCGTGAGCAGGG
CCGCCGCCGCGGGAGATAAATGTCGTTCGGGCCGAAAACGGGCTACCGCG
ACGGCGGCAATAGAGGCGGACAGGACCGATTCAAGTGGGAGGATGTGAAA
GACG
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Synonyms
Publications