jgi.p|Nanoce1779_2|610084, mRNA_10180 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|610084
Unique NamemRNA_10180
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1314
Alignment locationscaffold_48:81630..82943 +

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Properties
Property NameValue
TranscriptId610170
TrackFilteredModels2
ProteinId610084
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_48supercontigscaffold_48:81630..82943 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|610084gene_10180Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|610084mRNA_10180-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10180CDS_10180Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10180 ID=mRNA_10180|Name=jgi.p|Nanoce1779_2|610084|organism=Nannochloropsis oceanica|type=mRNA|length=1314bp
AAGGAAGAGAAGGACAAAGGTAAGCAGATATCGCCGCAAAAAGGTGACTT
GGGGGGCAACGACAAAGACAACCTCAAAGAGAAGCAGGATGAGGAGCAGA
CCGCCCCAAGTGCTACCGCCGTCGATGCTGAGGACAAGGGGGAGGCTTTT
ACCGCAGGCAAAGCCAACGAGTACGAAAACGATGCTGGTGCTAATTTCTC
GAAAGATTTTATAAACATTAGCAACAAAAAGAAACTACGGCCTGCGTGTA
ATTCTAAATCGAAAAGCCCCCGCGACTTCCACAAGACTGTTGCAGGCGTT
GTGATCGTCCTAGCATTTGCGGCGTCGGCTGCCTCCTCCTACTTCTTCTC
TCAACCCCCCTTTGCGTCACGCACATCAACAAGAGCGTCCCAACCAAAGG
CACCTCCAGAATTCATTCCCCCGTCCACGAGTGGAAGAAGAAAGCGCTTT
CTCTTCCTATCCCCTTCCGAGTCTCCGAAACAAACCCAAGCCCCACAAGC
CCCCCCTGACATCATGCTCTACACCCGCGAAGGTCCCCTTATCCTCGTCC
ACGGCCAGACCATCGACACGCCTTTCGAGAATGCTCGTATCTACCTGCAT
TACTACCTGGTCAATGCCCTCGATTGGCTCATCCACCCCTTCTTCCTCCA
GCGGCCCAATCGCTCCTCCTCTCCCACCCTTCCTCCTCCAGCCACTCCCA
CCGTCCCTCGTCCTTCTTCCCAGCCTTCCTCCAGCCCCCCCTGCGGGCTC
ACTCCAGCACTACACCGGCGACCCAAAACCTTCCTTTTGAGCCTGGTGGG
GGTGGCAGGCACGTCTCTTGCCGGCCACGCAACGGCCGGTCGAGCCGCCC
AGGCCGCAGGCCATGCCCTGGTCAAGCAACAAGCCGCGCATCGCCATTGG
ATGGTGGGTCACCGCACCCTTGCCTTTTTGGGGAGGAATGTGGATCAAGT
CGGAGTAGCGGTGGTGGCAGTGGGGGAGGTGGCTTCAAGCCTGGCAATGG
CTGCTTCGGGAGTAGGGACCACGGCGTCAGGTTTGGGGTATAGGAGTGCG
GGGCAGGTGGTGGGGAGTGCGCAGATGGTAGCCTCGGGCGTGGGCTGCAC
GGCAAGGAGCCTGGGAATGTTGGCTTCGTCGGTAGGTGTACGATTGAGTA
ACAGTGCGGCACGAGTTGCACAGGCTTCGGCGACGGCCTCTACGATGGCG
GCCAAGCGGGCGTGGATTGCGAGGGTGGTGCCGGCGGTGGGGTGGCTGGT
GGTTGGTATGATGGCGACAAGCGTGCTGGTGGACTGGGTGTGGTGCGTTT
ATACCCGGGAATGA
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protein sequence of jgi.p|Nanoce1779_2|610084

>mRNA_10180-protein ID=mRNA_10180-protein|Name=jgi.p|Nanoce1779_2|610084|organism=Nannochloropsis oceanica|type=polypeptide|length=438bp
KEEKDKGKQISPQKGDLGGNDKDNLKEKQDEEQTAPSATAVDAEDKGEAF
TAGKANEYENDAGANFSKDFINISNKKKLRPACNSKSKSPRDFHKTVAGV
VIVLAFAASAASSYFFSQPPFASRTSTRASQPKAPPEFIPPSTSGRRKRF
LFLSPSESPKQTQAPQAPPDIMLYTREGPLILVHGQTIDTPFENARIYLH
YYLVNALDWLIHPFFLQRPNRSSSPTLPPPATPTVPRPSSQPSSSPPCGL
TPALHRRPKTFLLSLVGVAGTSLAGHATAGRAAQAAGHALVKQQAAHRHW
MVGHRTLAFLGRNVDQVGVAVVAVGEVASSLAMAASGVGTTASGLGYRSA
GQVVGSAQMVASGVGCTARSLGMLASSVGVRLSNSAARVAQASATASTMA
AKRAWIARVVPAVGWLVVGMMATSVLVDWVWCVYTRE*
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mRNA from alignment at scaffold_48:81630..82943+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10180 ID=mRNA_10180|Name=jgi.p|Nanoce1779_2|610084|organism=Nannochloropsis oceanica|type=mRNA|length=1314bp|location=Sequence derived from alignment at scaffold_48:81630..82943+ (Nannochloropsis oceanica)
AAGGAAGAGAAGGACAAAGGTAAGCAGATATCGCCGCAAAAAGGTGACTT
GGGGGGCAACGACAAAGACAACCTCAAAGAGAAGCAGGATGAGGAGCAGA
CCGCCCCAAGTGCTACCGCCGTCGATGCTGAGGACAAGGGGGAGGCTTTT
ACCGCAGGCAAAGCCAACGAGTACGAAAACGATGCTGGTGCTAATTTCTC
GAAAGATTTTATAAACATTAGCAACAAAAAGAAACTACGGCCTGCGTGTA
ATTCTAAATCGAAAAGCCCCCGCGACTTCCACAAGACTGTTGCAGGCGTT
GTGATCGTCCTAGCATTTGCGGCGTCGGCTGCCTCCTCCTACTTCTTCTC
TCAACCCCCCTTTGCGTCACGCACATCAACAAGAGCGTCCCAACCAAAGG
CACCTCCAGAATTCATTCCCCCGTCCACGAGTGGAAGAAGAAAGCGCTTT
CTCTTCCTATCCCCTTCCGAGTCTCCGAAACAAACCCAAGCCCCACAAGC
CCCCCCTGACATCATGCTCTACACCCGCGAAGGTCCCCTTATCCTCGTCC
ACGGCCAGACCATCGACACGCCTTTCGAGAATGCTCGTATCTACCTGCAT
TACTACCTGGTCAATGCCCTCGATTGGCTCATCCACCCCTTCTTCCTCCA
GCGGCCCAATCGCTCCTCCTCTCCCACCCTTCCTCCTCCAGCCACTCCCA
CCGTCCCTCGTCCTTCTTCCCAGCCTTCCTCCAGCCCCCCCTGCGGGCTC
ACTCCAGCACTACACCGGCGACCCAAAACCTTCCTTTTGAGCCTGGTGGG
GGTGGCAGGCACGTCTCTTGCCGGCCACGCAACGGCCGGTCGAGCCGCCC
AGGCCGCAGGCCATGCCCTGGTCAAGCAACAAGCCGCGCATCGCCATTGG
ATGGTGGGTCACCGCACCCTTGCCTTTTTGGGGAGGAATGTGGATCAAGT
CGGAGTAGCGGTGGTGGCAGTGGGGGAGGTGGCTTCAAGCCTGGCAATGG
CTGCTTCGGGAGTAGGGACCACGGCGTCAGGTTTGGGGTATAGGAGTGCG
GGGCAGGTGGTGGGGAGTGCGCAGATGGTAGCCTCGGGCGTGGGCTGCAC
GGCAAGGAGCCTGGGAATGTTGGCTTCGTCGGTAGGTGTACGATTGAGTA
ACAGTGCGGCACGAGTTGCACAGGCTTCGGCGACGGCCTCTACGATGGCG
GCCAAGCGGGCGTGGATTGCGAGGGTGGTGCCGGCGGTGGGGTGGCTGGT
GGTTGGTATGATGGCGACAAGCGTGCTGGTGGACTGGGTGTGGTGCGTTT
ATACCCGGGAATGA
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Coding sequence (CDS) from alignment at scaffold_48:81630..82943+

>mRNA_10180 ID=mRNA_10180|Name=jgi.p|Nanoce1779_2|610084|organism=Nannochloropsis oceanica|type=CDS|length=1314bp|location=Sequence derived from alignment at scaffold_48:81630..82943+ (Nannochloropsis oceanica)
AAGGAAGAGAAGGACAAAGGTAAGCAGATATCGCCGCAAAAAGGTGACTT
GGGGGGCAACGACAAAGACAACCTCAAAGAGAAGCAGGATGAGGAGCAGA
CCGCCCCAAGTGCTACCGCCGTCGATGCTGAGGACAAGGGGGAGGCTTTT
ACCGCAGGCAAAGCCAACGAGTACGAAAACGATGCTGGTGCTAATTTCTC
GAAAGATTTTATAAACATTAGCAACAAAAAGAAACTACGGCCTGCGTGTA
ATTCTAAATCGAAAAGCCCCCGCGACTTCCACAAGACTGTTGCAGGCGTT
GTGATCGTCCTAGCATTTGCGGCGTCGGCTGCCTCCTCCTACTTCTTCTC
TCAACCCCCCTTTGCGTCACGCACATCAACAAGAGCGTCCCAACCAAAGG
CACCTCCAGAATTCATTCCCCCGTCCACGAGTGGAAGAAGAAAGCGCTTT
CTCTTCCTATCCCCTTCCGAGTCTCCGAAACAAACCCAAGCCCCACAAGC
CCCCCCTGACATCATGCTCTACACCCGCGAAGGTCCCCTTATCCTCGTCC
ACGGCCAGACCATCGACACGCCTTTCGAGAATGCTCGTATCTACCTGCAT
TACTACCTGGTCAATGCCCTCGATTGGCTCATCCACCCCTTCTTCCTCCA
GCGGCCCAATCGCTCCTCCTCTCCCACCCTTCCTCCTCCAGCCACTCCCA
CCGTCCCTCGTCCTTCTTCCCAGCCTTCCTCCAGCCCCCCCTGCGGGCTC
ACTCCAGCACTACACCGGCGACCCAAAACCTTCCTTTTGAGCCTGGTGGG
GGTGGCAGGCACGTCTCTTGCCGGCCACGCAACGGCCGGTCGAGCCGCCC
AGGCCGCAGGCCATGCCCTGGTCAAGCAACAAGCCGCGCATCGCCATTGG
ATGGTGGGTCACCGCACCCTTGCCTTTTTGGGGAGGAATGTGGATCAAGT
CGGAGTAGCGGTGGTGGCAGTGGGGGAGGTGGCTTCAAGCCTGGCAATGG
CTGCTTCGGGAGTAGGGACCACGGCGTCAGGTTTGGGGTATAGGAGTGCG
GGGCAGGTGGTGGGGAGTGCGCAGATGGTAGCCTCGGGCGTGGGCTGCAC
GGCAAGGAGCCTGGGAATGTTGGCTTCGTCGGTAGGTGTACGATTGAGTA
ACAGTGCGGCACGAGTTGCACAGGCTTCGGCGACGGCCTCTACGATGGCG
GCCAAGCGGGCGTGGATTGCGAGGGTGGTGCCGGCGGTGGGGTGGCTGGT
GGTTGGTATGATGGCGACAAGCGTGCTGGTGGACTGGGTGTGGTGCGTTT
ATACCCGGGAATGA
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Synonyms
Publications